Gchil3198.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3198.t1
Unique NameGchil3198.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:792127..792821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705419.1
Preferred nameRPL17
PFAMsRibosomal_L22
Max annot lvl2759|Eukaryota
KEGG rclassRC00031,RC00042,RC00773
KEGG koko:K00015,ko:K00474,ko:K02880,ko:K06479,ko:K08267
KEGG ReactionR00717,R01388,R03451
KEGG Pathwayko00310,ko00630,ko01100,ko01110,ko01120,ko03010,ko04150,ko04650,map00310,map00630,map01100,map01110,map01120,map03010,map04150,map04650
KEGG ModuleM00177
GOsGO:0000184,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007154,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030684,GO:0030687,GO:0031667,GO:0031668,GO:0031669,GO:0031672,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042273,GO:0042594,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0045787,GO:0045931,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070180,GO:0070727,GO:0070972,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090068,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:1990928,GO:2000045
Evalue1.57e-64
EggNOG OGsCOG0091@1|root,KOG3353@2759|Eukaryota
EC1.1.1.26,1.14.11.8
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko00537,ko01000,ko03011,ko04090,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3198Gchil3198Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 792127..792821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3198.t1Gchil3198.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 792127..792821 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3198.t1.stop1Gchil3198.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 792127..792129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3198.t1.CDS1Gchil3198.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 792127..792635 -
Gchil3198.t1.CDS2Gchil3198.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 792776..792821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3198.t1.exon1Gchil3198.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 792127..792635 -
Gchil3198.t1.exon2Gchil3198.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 792776..792821 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3198.t1.intron1Gchil3198.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 792636..792775 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3198.t1.start1Gchil3198.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 792819..792821 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3198.t1 ID=Gchil3198.t1|Name=Gchil3198.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=185bp
MGKATYSREPPNPTKSVRARGSDLRVHFKNTHEAGQAIKGMKLERAQKYL
QNVIDKKEIVPFRRFKIGVKGKPQCNNWKVPVGRWPKKSAQFLLGLLKNA
ESNAEGRGIDSENLVVSHMQVNKAVRGRRRTFRAHGRINAFMSQPCHVEL
FLSVREDPVAAGDEDGTGAPSNLSRGRLRSGTTA*
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spliced messenger RNA

>Gchil3198.t1 ID=Gchil3198.t1|Name=Gchil3198.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004382_pilon:792127..792821- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGGCAACTTACTCGAGAGAGCCGCCGAATCCCACGAAATCCGT
TAGAGCGCGTGGCAGTGATTTGCGTGTTCATTTTAAGAATACTCATGAAG
CTGGTCAGGCAATAAAAGGAATGAAGCTCGAAAGAGCGCAGAAATACCTT
CAGAATGTCATTGACAAGAAGGAGATTGTCCCATTTCGACGGTTCAAGAT
TGGCGTCAAGGGAAAGCCACAGTGCAACAATTGGAAGGTACCTGTCGGAA
GGTGGCCGAAGAAATCCGCACAATTCCTCCTTGGGCTTTTGAAGAACGCG
GAAAGCAATGCCGAAGGACGCGGAATCGACTCGGAGAACCTTGTGGTATC
TCACATGCAGGTGAACAAGGCTGTTCGCGGACGACGTCGAACTTTCAGGG
CGCATGGTCGAATCAACGCATTCATGAGCCAGCCGTGTCACGTTGAGCTG
TTCCTCTCTGTACGCGAAGATCCGGTCGCTGCCGGTGATGAGGACGGTAC
TGGAGCCCCATCTAATCTATCACGTGGTCGACTTCGTTCTGGTACGACTG
CGTAG
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protein sequence of Gchil3198.t1

>Gchil3198.t1 ID=Gchil3198.t1|Name=Gchil3198.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=185bp
MGKATYSREPPNPTKSVRARGSDLRVHFKNTHEAGQAIKGMKLERAQKYL
QNVIDKKEIVPFRRFKIGVKGKPQCNNWKVPVGRWPKKSAQFLLGLLKNA
ESNAEGRGIDSENLVVSHMQVNKAVRGRRRTFRAHGRINAFMSQPCHVEL
FLSVREDPVAAGDEDGTGAPSNLSRGRLRSGTTA*
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mRNA from alignment at tig00004382_pilon:792127..792821-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3198.t1 ID=Gchil3198.t1|Name=Gchil3198.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=695bp|location=Sequence derived from alignment at tig00004382_pilon:792127..792821- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAGGCAACTTACTCGAGAGAGCCGCCGAATCCCACGAAATGTAA
GTTTGAACACCGTAACTACTTTCCGCGACAGAGTCCATTGAGACTCTTTG
CATGGATTTCTTTTGTAACTCTAATAAGATTTGAGACGTATTCTTCTAAC
GATCCACTTCAACACCTTGTATTGTTCTGGAAACAGCCGTTAGAGCGCGT
GGCAGTGATTTGCGTGTTCATTTTAAGAATACTCATGAAGCTGGTCAGGC
AATAAAAGGAATGAAGCTCGAAAGAGCGCAGAAATACCTTCAGAATGTCA
TTGACAAGAAGGAGATTGTCCCATTTCGACGGTTCAAGATTGGCGTCAAG
GGAAAGCCACAGTGCAACAATTGGAAGGTACCTGTCGGAAGGTGGCCGAA
GAAATCCGCACAATTCCTCCTTGGGCTTTTGAAGAACGCGGAAAGCAATG
CCGAAGGACGCGGAATCGACTCGGAGAACCTTGTGGTATCTCACATGCAG
GTGAACAAGGCTGTTCGCGGACGACGTCGAACTTTCAGGGCGCATGGTCG
AATCAACGCATTCATGAGCCAGCCGTGTCACGTTGAGCTGTTCCTCTCTG
TACGCGAAGATCCGGTCGCTGCCGGTGATGAGGACGGTACTGGAGCCCCA
TCTAATCTATCACGTGGTCGACTTCGTTCTGGTACGACTGCGTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:792127..792821-

>Gchil3198.t1 ID=Gchil3198.t1|Name=Gchil3198.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00004382_pilon:792127..792821- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAGGCAACTTACTCGAGAGAGCCGCCGAATCCCACGAAATCCGT
TAGAGCGCGTGGCAGTGATTTGCGTGTTCATTTTAAGAATACTCATGAAG
CTGGTCAGGCAATAAAAGGAATGAAGCTCGAAAGAGCGCAGAAATACCTT
CAGAATGTCATTGACAAGAAGGAGATTGTCCCATTTCGACGGTTCAAGAT
TGGCGTCAAGGGAAAGCCACAGTGCAACAATTGGAAGGTACCTGTCGGAA
GGTGGCCGAAGAAATCCGCACAATTCCTCCTTGGGCTTTTGAAGAACGCG
GAAAGCAATGCCGAAGGACGCGGAATCGACTCGGAGAACCTTGTGGTATC
TCACATGCAGGTGAACAAGGCTGTTCGCGGACGACGTCGAACTTTCAGGG
CGCATGGTCGAATCAACGCATTCATGAGCCAGCCGTGTCACGTTGAGCTG
TTCCTCTCTGTACGCGAAGATCCGGTCGCTGCCGGTGATGAGGACGGTAC
TGGAGCCCCATCTAATCTATCACGTGGTCGACTTCGTTCTGGTACGACTG
CGTAG
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