Gchil3196.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3196.t2
Unique Name	Gchil3196.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	787

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:787098..789458 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO44349
PFAMs	HH_signal,Hint
Max annot lvl	33208\|Metazoa
Evalue	2.03e-11
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota,38EJM@33154\|Opisthokonta,3BA86@33208\|Metazoa
Description	intein-mediated protein splicing
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3196	Gchil3196	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 787098..789458 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3196.t2.stop1	Gchil3196.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 787098..787100 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3196.t2.CDS1	Gchil3196.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 787098..789458 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3196.t2.exon1	Gchil3196.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 787098..789458 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3196.t2.start1	Gchil3196.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 789456..789458 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3196.t2	Gchil3196.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 787098..789458 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:787098..789458-
coding sequence from alignment at tig00004382_pilon:787098..789458-

mRNA sequence

>Gchil3196.t2 ID=Gchil3196.t2|Name=Gchil3196.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=787bp
MLRILAFIVVLLSVPTSSLAAPTKRVVTLEAVFDSTEQRLSLNSKDIHGH
YSRFMELSGKGNLCPRTITHLTNGNHDTTAISLPHEEITHDGSICNDGGL
LMLKYEKKLSSDAIADIFGLQKDVTGFKRSIRKVLLSLDGFYIGKENQTR
SCVGSSLTKGAAVLITSDSEPFGNEFHIPFHGHPKVMLINDKHKACAFTS
TWGSPSPIPVQPTETKESRYGPVSVTISLSPNPSNFKSPMSSTEPTKSTV
MPSSTPRPSSKADTEDMVPSPQSSPIYNRELPSIDASSKPSKDAESQEYG
PTPGKTSPKAPTETHTSTATATEGRPSTLATESVSPTSPNQTKIPYTTAS
PSPATDQKDSKTQSITPSSPEKSTIQIQHPSPSTTGKALDIPSYETAPPK
EMSNQATPKASQYPSPSTKSRGFKTLAPNATTVFSSSQVSKQPRPSISKP
STSPSASRKQNIKPPTATKAVSPINVVSATGSPTPSIYPDSSKAPKIVDF
ASTGGRPEQSTTKGKEGNPLLEQGIILRGTHSPTAEPSKANPHLVFGHIP
SASILPSFEVSTPSVQESPVALSDPQMSKSDASQSAIPSSENSSTPSPST
SEAPQNDGSSCFPAGALTVGGNGNLIRVEDLRVGNRVMVADGILSPVIDF
SHAEKAIVFPFSQFITEGGKSLTVTSSHYIYTQRGLLPARDVSASDFLTL
SNGTLALVTAKIQIFDRGLFNPHTSHGDIIIDGFKVSSYTSAIEPRIAHA
LMAPIRLLDMLGSRPSLLSFFVRNPLVMRYFNIRSS*

spliced messenger RNA

>Gchil3196.t2 ID=Gchil3196.t2|Name=Gchil3196.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00004382_pilon:787098..789458- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGGATCCTCGCCTTCATCGTGGTATTGCTTTCAGTGCCGACCTC
TTCACTGGCAGCTCCAACCAAGCGAGTCGTCACTCTCGAGGCCGTGTTTG
ATTCTACTGAGCAGCGACTTTCTCTGAATTCAAAAGACATTCATGGCCAT
TACTCCCGATTTATGGAACTCTCTGGCAAAGGAAACCTATGTCCGAGGAC
GATCACGCACTTAACCAATGGAAACCATGATACGACTGCTATTTCTTTAC
CTCACGAAGAGATCACGCATGATGGGTCAATTTGTAACGATGGCGGACTG
CTCATGTTGAAGTATGAAAAGAAGCTCTCCTCTGATGCTATCGCTGATAT
ATTCGGGCTTCAAAAAGACGTGACGGGATTTAAACGTTCTATTCGCAAAG
TGTTGTTGAGCCTGGACGGTTTTTACATAGGAAAAGAGAACCAAACTAGA
TCCTGTGTTGGCTCATCGTTGACAAAGGGGGCTGCGGTGCTTATCACATC
TGACAGTGAGCCTTTCGGGAATGAGTTTCACATCCCCTTCCACGGCCATC
CGAAAGTCATGCTCATAAATGACAAACACAAAGCTTGTGCGTTTACCAGC
ACGTGGGGCTCACCATCGCCAATTCCTGTGCAGCCAACCGAAACAAAGGA
ATCCCGATATGGGCCTGTATCGGTGACTATCTCTTTGTCGCCAAACCCAA
GCAATTTCAAGTCGCCTATGTCCTCTACTGAACCAACGAAATCTACAGTG
ATGCCTTCTTCTACTCCTCGCCCTTCATCCAAAGCGGACACAGAAGATAT
GGTGCCTTCACCACAGTCATCTCCAATATATAACCGGGAATTACCAAGCA
TTGATGCTTCATCTAAACCGTCAAAGGACGCTGAAAGTCAGGAATATGGA
CCAACACCGGGGAAAACGTCACCCAAAGCACCCACGGAAACTCACACAAG
CACAGCAACCGCAACAGAAGGGCGACCTTCAACTCTTGCGACAGAATCCG
TCTCGCCAACCTCTCCAAACCAAACTAAAATACCATACACTACAGCTTCT
CCATCTCCAGCGACTGATCAGAAGGACTCGAAAACGCAATCCATTACGCC
AAGTTCTCCCGAAAAGAGTACAATACAGATACAGCACCCATCTCCATCGA
CCACTGGGAAGGCTTTGGACATACCATCCTATGAAACAGCCCCCCCGAAA
GAGATGTCTAACCAGGCTACACCGAAAGCATCACAGTATCCGTCTCCATC
AACGAAATCGAGAGGTTTTAAGACGCTAGCACCCAACGCAACTACAGTGT
TTTCATCAAGTCAAGTTTCCAAGCAGCCACGACCAAGCATATCAAAGCCT
TCAACATCGCCCTCAGCATCAAGAAAACAAAACATCAAGCCCCCGACTGC
TACGAAGGCAGTGTCTCCTATCAATGTCGTTTCTGCTACGGGATCTCCGA
CACCTTCCATTTACCCGGACTCTTCGAAGGCACCCAAAATCGTGGATTTT
GCTTCCACAGGAGGACGTCCGGAGCAGTCTACCACCAAGGGAAAAGAGGG
AAACCCATTACTAGAACAAGGTATCATATTAAGGGGAACTCATTCGCCAA
CGGCAGAGCCGTCAAAAGCGAATCCTCATCTTGTCTTCGGTCACATTCCA
TCGGCTTCAATTTTGCCAAGCTTTGAAGTTTCTACACCCTCTGTGCAGGA
AAGCCCAGTCGCTCTGAGTGATCCACAGATGAGTAAATCAGATGCATCGC
AATCTGCAATACCAAGCAGCGAAAATTCAAGCACCCCATCGCCGTCCACT
TCAGAGGCTCCTCAGAATGATGGTTCTTCTTGTTTCCCTGCTGGTGCTTT
AACAGTTGGGGGGAACGGAAACTTAATCAGAGTTGAAGACTTGCGGGTCG
GCAATAGAGTGATGGTCGCAGATGGTATATTATCTCCCGTCATCGATTTC
AGCCATGCTGAAAAGGCAATTGTTTTCCCCTTCAGTCAGTTCATCACTGA
GGGCGGAAAGAGCCTTACCGTTACATCCTCACATTATATCTACACCCAAA
GAGGTTTACTACCTGCTCGAGATGTTTCAGCTTCAGACTTCTTGACCCTT
TCAAATGGGACTCTAGCTCTTGTCACGGCCAAGATTCAGATTTTTGATCG
TGGTCTCTTCAATCCCCACACATCACATGGAGACATTATCATTGATGGCT
TTAAAGTGAGCTCGTACACTTCCGCAATTGAACCCCGGATTGCTCACGCG
TTGATGGCTCCCATAAGACTTCTGGATATGCTGGGAAGTCGCCCATCACT
CTTGAGTTTCTTTGTTCGCAATCCATTAGTCATGAGGTACTTCAACATCC
GCAGTTCGTAG

protein sequence of Gchil3196.t2

>Gchil3196.t2 ID=Gchil3196.t2|Name=Gchil3196.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=787bp
MLRILAFIVVLLSVPTSSLAAPTKRVVTLEAVFDSTEQRLSLNSKDIHGH
YSRFMELSGKGNLCPRTITHLTNGNHDTTAISLPHEEITHDGSICNDGGL
LMLKYEKKLSSDAIADIFGLQKDVTGFKRSIRKVLLSLDGFYIGKENQTR
SCVGSSLTKGAAVLITSDSEPFGNEFHIPFHGHPKVMLINDKHKACAFTS
TWGSPSPIPVQPTETKESRYGPVSVTISLSPNPSNFKSPMSSTEPTKSTV
MPSSTPRPSSKADTEDMVPSPQSSPIYNRELPSIDASSKPSKDAESQEYG
PTPGKTSPKAPTETHTSTATATEGRPSTLATESVSPTSPNQTKIPYTTAS
PSPATDQKDSKTQSITPSSPEKSTIQIQHPSPSTTGKALDIPSYETAPPK
EMSNQATPKASQYPSPSTKSRGFKTLAPNATTVFSSSQVSKQPRPSISKP
STSPSASRKQNIKPPTATKAVSPINVVSATGSPTPSIYPDSSKAPKIVDF
ASTGGRPEQSTTKGKEGNPLLEQGIILRGTHSPTAEPSKANPHLVFGHIP
SASILPSFEVSTPSVQESPVALSDPQMSKSDASQSAIPSSENSSTPSPST
SEAPQNDGSSCFPAGALTVGGNGNLIRVEDLRVGNRVMVADGILSPVIDF
SHAEKAIVFPFSQFITEGGKSLTVTSSHYIYTQRGLLPARDVSASDFLTL
SNGTLALVTAKIQIFDRGLFNPHTSHGDIIIDGFKVSSYTSAIEPRIAHA
LMAPIRLLDMLGSRPSLLSFFVRNPLVMRYFNIRSS*

mRNA from alignment at tig00004382_pilon:787098..789458-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3196.t2 ID=Gchil3196.t2|Name=Gchil3196.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00004382_pilon:787098..789458- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAGGATCCTCGCCTTCATCGTGGTATTGCTTTCAGTGCCGACCTC
TTCACTGGCAGCTCCAACCAAGCGAGTCGTCACTCTCGAGGCCGTGTTTG
ATTCTACTGAGCAGCGACTTTCTCTGAATTCAAAAGACATTCATGGCCAT
TACTCCCGATTTATGGAACTCTCTGGCAAAGGAAACCTATGTCCGAGGAC
GATCACGCACTTAACCAATGGAAACCATGATACGACTGCTATTTCTTTAC
CTCACGAAGAGATCACGCATGATGGGTCAATTTGTAACGATGGCGGACTG
CTCATGTTGAAGTATGAAAAGAAGCTCTCCTCTGATGCTATCGCTGATAT
ATTCGGGCTTCAAAAAGACGTGACGGGATTTAAACGTTCTATTCGCAAAG
TGTTGTTGAGCCTGGACGGTTTTTACATAGGAAAAGAGAACCAAACTAGA
TCCTGTGTTGGCTCATCGTTGACAAAGGGGGCTGCGGTGCTTATCACATC
TGACAGTGAGCCTTTCGGGAATGAGTTTCACATCCCCTTCCACGGCCATC
CGAAAGTCATGCTCATAAATGACAAACACAAAGCTTGTGCGTTTACCAGC
ACGTGGGGCTCACCATCGCCAATTCCTGTGCAGCCAACCGAAACAAAGGA
ATCCCGATATGGGCCTGTATCGGTGACTATCTCTTTGTCGCCAAACCCAA
GCAATTTCAAGTCGCCTATGTCCTCTACTGAACCAACGAAATCTACAGTG
ATGCCTTCTTCTACTCCTCGCCCTTCATCCAAAGCGGACACAGAAGATAT
GGTGCCTTCACCACAGTCATCTCCAATATATAACCGGGAATTACCAAGCA
TTGATGCTTCATCTAAACCGTCAAAGGACGCTGAAAGTCAGGAATATGGA
CCAACACCGGGGAAAACGTCACCCAAAGCACCCACGGAAACTCACACAAG
CACAGCAACCGCAACAGAAGGGCGACCTTCAACTCTTGCGACAGAATCCG
TCTCGCCAACCTCTCCAAACCAAACTAAAATACCATACACTACAGCTTCT
CCATCTCCAGCGACTGATCAGAAGGACTCGAAAACGCAATCCATTACGCC
AAGTTCTCCCGAAAAGAGTACAATACAGATACAGCACCCATCTCCATCGA
CCACTGGGAAGGCTTTGGACATACCATCCTATGAAACAGCCCCCCCGAAA
GAGATGTCTAACCAGGCTACACCGAAAGCATCACAGTATCCGTCTCCATC
AACGAAATCGAGAGGTTTTAAGACGCTAGCACCCAACGCAACTACAGTGT
TTTCATCAAGTCAAGTTTCCAAGCAGCCACGACCAAGCATATCAAAGCCT
TCAACATCGCCCTCAGCATCAAGAAAACAAAACATCAAGCCCCCGACTGC
TACGAAGGCAGTGTCTCCTATCAATGTCGTTTCTGCTACGGGATCTCCGA
CACCTTCCATTTACCCGGACTCTTCGAAGGCACCCAAAATCGTGGATTTT
GCTTCCACAGGAGGACGTCCGGAGCAGTCTACCACCAAGGGAAAAGAGGG
AAACCCATTACTAGAACAAGGTATCATATTAAGGGGAACTCATTCGCCAA
CGGCAGAGCCGTCAAAAGCGAATCCTCATCTTGTCTTCGGTCACATTCCA
TCGGCTTCAATTTTGCCAAGCTTTGAAGTTTCTACACCCTCTGTGCAGGA
AAGCCCAGTCGCTCTGAGTGATCCACAGATGAGTAAATCAGATGCATCGC
AATCTGCAATACCAAGCAGCGAAAATTCAAGCACCCCATCGCCGTCCACT
TCAGAGGCTCCTCAGAATGATGGTTCTTCTTGTTTCCCTGCTGGTGCTTT
AACAGTTGGGGGGAACGGAAACTTAATCAGAGTTGAAGACTTGCGGGTCG
GCAATAGAGTGATGGTCGCAGATGGTATATTATCTCCCGTCATCGATTTC
AGCCATGCTGAAAAGGCAATTGTTTTCCCCTTCAGTCAGTTCATCACTGA
GGGCGGAAAGAGCCTTACCGTTACATCCTCACATTATATCTACACCCAAA
GAGGTTTACTACCTGCTCGAGATGTTTCAGCTTCAGACTTCTTGACCCTT
TCAAATGGGACTCTAGCTCTTGTCACGGCCAAGATTCAGATTTTTGATCG
TGGTCTCTTCAATCCCCACACATCACATGGAGACATTATCATTGATGGCT
TTAAAGTGAGCTCGTACACTTCCGCAATTGAACCCCGGATTGCTCACGCG
TTGATGGCTCCCATAAGACTTCTGGATATGCTGGGAAGTCGCCCATCACT
CTTGAGTTTCTTTGTTCGCAATCCATTAGTCATGAGGTACTTCAACATCC
GCAGTTCGTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:787098..789458-

>Gchil3196.t2 ID=Gchil3196.t2|Name=Gchil3196.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2361bp|location=Sequence derived from alignment at tig00004382_pilon:787098..789458- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAGGATCCTCGCCTTCATCGTGGTATTGCTTTCAGTGCCGACCTC
TTCACTGGCAGCTCCAACCAAGCGAGTCGTCACTCTCGAGGCCGTGTTTG
ATTCTACTGAGCAGCGACTTTCTCTGAATTCAAAAGACATTCATGGCCAT
TACTCCCGATTTATGGAACTCTCTGGCAAAGGAAACCTATGTCCGAGGAC
GATCACGCACTTAACCAATGGAAACCATGATACGACTGCTATTTCTTTAC
CTCACGAAGAGATCACGCATGATGGGTCAATTTGTAACGATGGCGGACTG
CTCATGTTGAAGTATGAAAAGAAGCTCTCCTCTGATGCTATCGCTGATAT
ATTCGGGCTTCAAAAAGACGTGACGGGATTTAAACGTTCTATTCGCAAAG
TGTTGTTGAGCCTGGACGGTTTTTACATAGGAAAAGAGAACCAAACTAGA
TCCTGTGTTGGCTCATCGTTGACAAAGGGGGCTGCGGTGCTTATCACATC
TGACAGTGAGCCTTTCGGGAATGAGTTTCACATCCCCTTCCACGGCCATC
CGAAAGTCATGCTCATAAATGACAAACACAAAGCTTGTGCGTTTACCAGC
ACGTGGGGCTCACCATCGCCAATTCCTGTGCAGCCAACCGAAACAAAGGA
ATCCCGATATGGGCCTGTATCGGTGACTATCTCTTTGTCGCCAAACCCAA
GCAATTTCAAGTCGCCTATGTCCTCTACTGAACCAACGAAATCTACAGTG
ATGCCTTCTTCTACTCCTCGCCCTTCATCCAAAGCGGACACAGAAGATAT
GGTGCCTTCACCACAGTCATCTCCAATATATAACCGGGAATTACCAAGCA
TTGATGCTTCATCTAAACCGTCAAAGGACGCTGAAAGTCAGGAATATGGA
CCAACACCGGGGAAAACGTCACCCAAAGCACCCACGGAAACTCACACAAG
CACAGCAACCGCAACAGAAGGGCGACCTTCAACTCTTGCGACAGAATCCG
TCTCGCCAACCTCTCCAAACCAAACTAAAATACCATACACTACAGCTTCT
CCATCTCCAGCGACTGATCAGAAGGACTCGAAAACGCAATCCATTACGCC
AAGTTCTCCCGAAAAGAGTACAATACAGATACAGCACCCATCTCCATCGA
CCACTGGGAAGGCTTTGGACATACCATCCTATGAAACAGCCCCCCCGAAA
GAGATGTCTAACCAGGCTACACCGAAAGCATCACAGTATCCGTCTCCATC
AACGAAATCGAGAGGTTTTAAGACGCTAGCACCCAACGCAACTACAGTGT
TTTCATCAAGTCAAGTTTCCAAGCAGCCACGACCAAGCATATCAAAGCCT
TCAACATCGCCCTCAGCATCAAGAAAACAAAACATCAAGCCCCCGACTGC
TACGAAGGCAGTGTCTCCTATCAATGTCGTTTCTGCTACGGGATCTCCGA
CACCTTCCATTTACCCGGACTCTTCGAAGGCACCCAAAATCGTGGATTTT
GCTTCCACAGGAGGACGTCCGGAGCAGTCTACCACCAAGGGAAAAGAGGG
AAACCCATTACTAGAACAAGGTATCATATTAAGGGGAACTCATTCGCCAA
CGGCAGAGCCGTCAAAAGCGAATCCTCATCTTGTCTTCGGTCACATTCCA
TCGGCTTCAATTTTGCCAAGCTTTGAAGTTTCTACACCCTCTGTGCAGGA
AAGCCCAGTCGCTCTGAGTGATCCACAGATGAGTAAATCAGATGCATCGC
AATCTGCAATACCAAGCAGCGAAAATTCAAGCACCCCATCGCCGTCCACT
TCAGAGGCTCCTCAGAATGATGGTTCTTCTTGTTTCCCTGCTGGTGCTTT
AACAGTTGGGGGGAACGGAAACTTAATCAGAGTTGAAGACTTGCGGGTCG
GCAATAGAGTGATGGTCGCAGATGGTATATTATCTCCCGTCATCGATTTC
AGCCATGCTGAAAAGGCAATTGTTTTCCCCTTCAGTCAGTTCATCACTGA
GGGCGGAAAGAGCCTTACCGTTACATCCTCACATTATATCTACACCCAAA
GAGGTTTACTACCTGCTCGAGATGTTTCAGCTTCAGACTTCTTGACCCTT
TCAAATGGGACTCTAGCTCTTGTCACGGCCAAGATTCAGATTTTTGATCG
TGGTCTCTTCAATCCCCACACATCACATGGAGACATTATCATTGATGGCT
TTAAAGTGAGCTCGTACACTTCCGCAATTGAACCCCGGATTGCTCACGCG
TTGATGGCTCCCATAAGACTTCTGGATATGCTGGGAAGTCGCCCATCACT
CTTGAGTTTCTTTGTTCGCAATCCATTAGTCATGAGGTACTTCAACATCC
GCAGTTCGTAG