Gchil3196.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3196.t1
Unique NameGchil3196.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:787098..788255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO44349
PFAMsHH_signal,Hint
Max annot lvl33208|Metazoa
Evalue5.09e-12
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota,38EJM@33154|Opisthokonta,3BA86@33208|Metazoa
Descriptionintein-mediated protein splicing
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3196Gchil3196Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 787098..789458 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3196.t1.stop1Gchil3196.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 787098..787100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3196.t1.CDS1Gchil3196.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 787098..788255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3196.t1.exon1Gchil3196.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 787098..788255 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3196.t1.start1Gchil3196.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 788253..788255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3196.t1Gchil3196.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 787098..788255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3196.t1 ID=Gchil3196.t1|Name=Gchil3196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=386bp
MSNQATPKASQYPSPSTKSRGFKTLAPNATTVFSSSQVSKQPRPSISKPS
TSPSASRKQNIKPPTATKAVSPINVVSATGSPTPSIYPDSSKAPKIVDFA
STGGRPEQSTTKGKEGNPLLEQGIILRGTHSPTAEPSKANPHLVFGHIPS
ASILPSFEVSTPSVQESPVALSDPQMSKSDASQSAIPSSENSSTPSPSTS
EAPQNDGSSCFPAGALTVGGNGNLIRVEDLRVGNRVMVADGILSPVIDFS
HAEKAIVFPFSQFITEGGKSLTVTSSHYIYTQRGLLPARDVSASDFLTLS
NGTLALVTAKIQIFDRGLFNPHTSHGDIIIDGFKVSSYTSAIEPRIAHAL
MAPIRLLDMLGSRPSLLSFFVRNPLVMRYFNIRSS*
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spliced messenger RNA

>Gchil3196.t1 ID=Gchil3196.t1|Name=Gchil3196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00004382_pilon:787098..788255- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAACCAGGCTACACCGAAAGCATCACAGTATCCGTCTCCATCAAC
GAAATCGAGAGGTTTTAAGACGCTAGCACCCAACGCAACTACAGTGTTTT
CATCAAGTCAAGTTTCCAAGCAGCCACGACCAAGCATATCAAAGCCTTCA
ACATCGCCCTCAGCATCAAGAAAACAAAACATCAAGCCCCCGACTGCTAC
GAAGGCAGTGTCTCCTATCAATGTCGTTTCTGCTACGGGATCTCCGACAC
CTTCCATTTACCCGGACTCTTCGAAGGCACCCAAAATCGTGGATTTTGCT
TCCACAGGAGGACGTCCGGAGCAGTCTACCACCAAGGGAAAAGAGGGAAA
CCCATTACTAGAACAAGGTATCATATTAAGGGGAACTCATTCGCCAACGG
CAGAGCCGTCAAAAGCGAATCCTCATCTTGTCTTCGGTCACATTCCATCG
GCTTCAATTTTGCCAAGCTTTGAAGTTTCTACACCCTCTGTGCAGGAAAG
CCCAGTCGCTCTGAGTGATCCACAGATGAGTAAATCAGATGCATCGCAAT
CTGCAATACCAAGCAGCGAAAATTCAAGCACCCCATCGCCGTCCACTTCA
GAGGCTCCTCAGAATGATGGTTCTTCTTGTTTCCCTGCTGGTGCTTTAAC
AGTTGGGGGGAACGGAAACTTAATCAGAGTTGAAGACTTGCGGGTCGGCA
ATAGAGTGATGGTCGCAGATGGTATATTATCTCCCGTCATCGATTTCAGC
CATGCTGAAAAGGCAATTGTTTTCCCCTTCAGTCAGTTCATCACTGAGGG
CGGAAAGAGCCTTACCGTTACATCCTCACATTATATCTACACCCAAAGAG
GTTTACTACCTGCTCGAGATGTTTCAGCTTCAGACTTCTTGACCCTTTCA
AATGGGACTCTAGCTCTTGTCACGGCCAAGATTCAGATTTTTGATCGTGG
TCTCTTCAATCCCCACACATCACATGGAGACATTATCATTGATGGCTTTA
AAGTGAGCTCGTACACTTCCGCAATTGAACCCCGGATTGCTCACGCGTTG
ATGGCTCCCATAAGACTTCTGGATATGCTGGGAAGTCGCCCATCACTCTT
GAGTTTCTTTGTTCGCAATCCATTAGTCATGAGGTACTTCAACATCCGCA
GTTCGTAG
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protein sequence of Gchil3196.t1

>Gchil3196.t1 ID=Gchil3196.t1|Name=Gchil3196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=386bp
MSNQATPKASQYPSPSTKSRGFKTLAPNATTVFSSSQVSKQPRPSISKPS
TSPSASRKQNIKPPTATKAVSPINVVSATGSPTPSIYPDSSKAPKIVDFA
STGGRPEQSTTKGKEGNPLLEQGIILRGTHSPTAEPSKANPHLVFGHIPS
ASILPSFEVSTPSVQESPVALSDPQMSKSDASQSAIPSSENSSTPSPSTS
EAPQNDGSSCFPAGALTVGGNGNLIRVEDLRVGNRVMVADGILSPVIDFS
HAEKAIVFPFSQFITEGGKSLTVTSSHYIYTQRGLLPARDVSASDFLTLS
NGTLALVTAKIQIFDRGLFNPHTSHGDIIIDGFKVSSYTSAIEPRIAHAL
MAPIRLLDMLGSRPSLLSFFVRNPLVMRYFNIRSS*
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mRNA from alignment at tig00004382_pilon:787098..788255-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3196.t1 ID=Gchil3196.t1|Name=Gchil3196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00004382_pilon:787098..788255- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAACCAGGCTACACCGAAAGCATCACAGTATCCGTCTCCATCAAC
GAAATCGAGAGGTTTTAAGACGCTAGCACCCAACGCAACTACAGTGTTTT
CATCAAGTCAAGTTTCCAAGCAGCCACGACCAAGCATATCAAAGCCTTCA
ACATCGCCCTCAGCATCAAGAAAACAAAACATCAAGCCCCCGACTGCTAC
GAAGGCAGTGTCTCCTATCAATGTCGTTTCTGCTACGGGATCTCCGACAC
CTTCCATTTACCCGGACTCTTCGAAGGCACCCAAAATCGTGGATTTTGCT
TCCACAGGAGGACGTCCGGAGCAGTCTACCACCAAGGGAAAAGAGGGAAA
CCCATTACTAGAACAAGGTATCATATTAAGGGGAACTCATTCGCCAACGG
CAGAGCCGTCAAAAGCGAATCCTCATCTTGTCTTCGGTCACATTCCATCG
GCTTCAATTTTGCCAAGCTTTGAAGTTTCTACACCCTCTGTGCAGGAAAG
CCCAGTCGCTCTGAGTGATCCACAGATGAGTAAATCAGATGCATCGCAAT
CTGCAATACCAAGCAGCGAAAATTCAAGCACCCCATCGCCGTCCACTTCA
GAGGCTCCTCAGAATGATGGTTCTTCTTGTTTCCCTGCTGGTGCTTTAAC
AGTTGGGGGGAACGGAAACTTAATCAGAGTTGAAGACTTGCGGGTCGGCA
ATAGAGTGATGGTCGCAGATGGTATATTATCTCCCGTCATCGATTTCAGC
CATGCTGAAAAGGCAATTGTTTTCCCCTTCAGTCAGTTCATCACTGAGGG
CGGAAAGAGCCTTACCGTTACATCCTCACATTATATCTACACCCAAAGAG
GTTTACTACCTGCTCGAGATGTTTCAGCTTCAGACTTCTTGACCCTTTCA
AATGGGACTCTAGCTCTTGTCACGGCCAAGATTCAGATTTTTGATCGTGG
TCTCTTCAATCCCCACACATCACATGGAGACATTATCATTGATGGCTTTA
AAGTGAGCTCGTACACTTCCGCAATTGAACCCCGGATTGCTCACGCGTTG
ATGGCTCCCATAAGACTTCTGGATATGCTGGGAAGTCGCCCATCACTCTT
GAGTTTCTTTGTTCGCAATCCATTAGTCATGAGGTACTTCAACATCCGCA
GTTCGTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:787098..788255-

>Gchil3196.t1 ID=Gchil3196.t1|Name=Gchil3196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00004382_pilon:787098..788255- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAACCAGGCTACACCGAAAGCATCACAGTATCCGTCTCCATCAAC
GAAATCGAGAGGTTTTAAGACGCTAGCACCCAACGCAACTACAGTGTTTT
CATCAAGTCAAGTTTCCAAGCAGCCACGACCAAGCATATCAAAGCCTTCA
ACATCGCCCTCAGCATCAAGAAAACAAAACATCAAGCCCCCGACTGCTAC
GAAGGCAGTGTCTCCTATCAATGTCGTTTCTGCTACGGGATCTCCGACAC
CTTCCATTTACCCGGACTCTTCGAAGGCACCCAAAATCGTGGATTTTGCT
TCCACAGGAGGACGTCCGGAGCAGTCTACCACCAAGGGAAAAGAGGGAAA
CCCATTACTAGAACAAGGTATCATATTAAGGGGAACTCATTCGCCAACGG
CAGAGCCGTCAAAAGCGAATCCTCATCTTGTCTTCGGTCACATTCCATCG
GCTTCAATTTTGCCAAGCTTTGAAGTTTCTACACCCTCTGTGCAGGAAAG
CCCAGTCGCTCTGAGTGATCCACAGATGAGTAAATCAGATGCATCGCAAT
CTGCAATACCAAGCAGCGAAAATTCAAGCACCCCATCGCCGTCCACTTCA
GAGGCTCCTCAGAATGATGGTTCTTCTTGTTTCCCTGCTGGTGCTTTAAC
AGTTGGGGGGAACGGAAACTTAATCAGAGTTGAAGACTTGCGGGTCGGCA
ATAGAGTGATGGTCGCAGATGGTATATTATCTCCCGTCATCGATTTCAGC
CATGCTGAAAAGGCAATTGTTTTCCCCTTCAGTCAGTTCATCACTGAGGG
CGGAAAGAGCCTTACCGTTACATCCTCACATTATATCTACACCCAAAGAG
GTTTACTACCTGCTCGAGATGTTTCAGCTTCAGACTTCTTGACCCTTTCA
AATGGGACTCTAGCTCTTGTCACGGCCAAGATTCAGATTTTTGATCGTGG
TCTCTTCAATCCCCACACATCACATGGAGACATTATCATTGATGGCTTTA
AAGTGAGCTCGTACACTTCCGCAATTGAACCCCGGATTGCTCACGCGTTG
ATGGCTCCCATAAGACTTCTGGATATGCTGGGAAGTCGCCCATCACTCTT
GAGTTTCTTTGTTCGCAATCCATTAGTCATGAGGTACTTCAACATCCGCA
GTTCGTAG
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