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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 180281.CPCC7001_973 |
| Preferred name | uvrB |
| PFAMs | Helicase_C,ResIII,UVR,UvrB |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K03702 |
| KEGG Pathway | ko03420,map03420 |
| Evalue | 8.08e-185 |
| EggNOG OGs | COG0556@1|root,COG0556@2|Bacteria,1G05H@1117|Cyanobacteria,22RPZ@167375|Cyanobium |
| Description | damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage |
| COG category | L |
| BRITE | ko00000,ko00001,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil3193.t1 ID=Gchil3193.t1|Name=Gchil3193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=856bp MALLFVFPPALPSSHRSIPRSSVRCNRAAHKPPTPTLPPSSPSLPPPFRE VSRSPPGLTVLYSRADSPITPSNLPQLLAFVRERPRVLLAVAPHVTLPRG PSEALASLGVRLVRRSVLSGPPRRARTTFLQPLYRGRPAVRKHRFELHAP YALAGSQSHAVQCLADGLLQQGKVFQTLAGVTGSGKSYMMASVITAAQVP TLILAPNKTLAAQLYNQFKLFFPRNRVEFFVSNFKHYQPEAYLPSCDKYI AKTSSIDHELDQLRHAATKSLFERNDTIVIASVSSIYGLGLPTEYLQAAF PARKGDSLTPQGFVDILKSINYVDDAMKIETTRGLFRQAQQVIDVSPPWE QPGILYRFSFDDSKLTALQRVNINLSTTEDLGEQLVLYPAKHFVTPKHRL EKAIEMIEEETRSSVQVFIENGKILEATRLQERVEVDMKMLRNVGFCQGI ENYSMYLSGRDCSQPPETLLDYMPRDGKWLLFIDESHVTVPQLGGMYAGN AARKKKLVQHGFRLPSALENRPLSSREFWKKAHQTIFVSATPGYFERKRS GSEGMIEAVIRPTGVLDPTVEVVGTKCQIEHLTCQLAKAASDGGKAIVTT ITKRFAEDLAHCLASKPPVKPILGRPLNVAFLHSGIDSVSRMHVLEAMRA SSPEEFSHGLHSNSGENRHPLDVVVGVNLLREGIDFPAVQLVAILDADSE GFLRGETALIQMMGRAARNVQGHVIMYADTITFAMRRAMDETARRRKLQI AYNSLHGVNPSPVRGPNPINSEQAAPLLERIRKMKDKARHSTSQSYHPSA LSKDSRARSTAKEESSSELDAEAIREKMLTAAASEDFETAALLRDRLVLM GVLKR* back to topspliced messenger RNA >Gchil3193.t1 ID=Gchil3193.t1|Name=Gchil3193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2568bp|location=Sequence derived from alignment at tig00004382_pilon:775852..778419- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTCTGCTCTTCGTCTTCCCACCAGCCCTACCCTCGTCACATCGATC GATTCCTCGCAGCTCTGTGCGATGCAATCGCGCCGCTCATAAGCCTCCAA CACCAACATTGCCTCCTTCGTCCCCCTCTCTCCCGCCACCGTTCCGCGAG GTTTCACGCTCGCCACCGGGTCTTACTGTCCTGTACTCTCGCGCCGACTC CCCCATCACCCCCTCGAACCTGCCACAGCTGCTCGCATTCGTGCGCGAGC GCCCGCGCGTGCTTCTTGCTGTCGCTCCACATGTCACTCTGCCACGCGGC CCGTCCGAGGCGCTAGCCAGCCTGGGCGTTCGTCTTGTTCGCCGCTCCGT TTTGTCTGGCCCGCCTCGACGAGCTCGCACAACGTTTTTGCAACCATTAT ATCGCGGGCGCCCTGCCGTCCGCAAACACCGATTCGAATTACACGCTCCG TACGCACTTGCTGGCAGCCAGTCTCATGCTGTGCAATGCTTGGCGGACGG TCTGTTGCAGCAGGGTAAGGTTTTTCAGACCCTCGCTGGGGTGACTGGGT CCGGTAAAAGTTATATGATGGCCAGTGTCATCACGGCAGCTCAGGTTCCC ACTCTTATCTTGGCACCTAACAAGACACTCGCTGCTCAGCTGTACAACCA GTTCAAATTATTTTTCCCGCGAAACCGGGTTGAGTTTTTTGTGTCCAACT TCAAGCACTACCAGCCCGAAGCTTACTTGCCTTCCTGTGACAAGTATATT GCGAAGACCAGCTCAATTGACCACGAGTTGGATCAGCTCCGGCACGCTGC CACAAAGAGTCTATTCGAAAGAAATGATACCATTGTCATAGCCAGCGTTA GTTCCATTTATGGTTTGGGTTTGCCCACCGAATACCTTCAAGCCGCCTTC CCTGCTCGAAAAGGTGACTCCTTGACACCACAAGGTTTTGTAGACATATT AAAGAGCATCAACTATGTTGATGACGCAATGAAAATAGAAACGACAAGAG GGCTATTTCGTCAAGCCCAGCAAGTCATCGATGTCTCACCCCCATGGGAG CAACCTGGAATTCTTTACCGATTCAGTTTTGATGATTCTAAACTGACAGC ATTGCAGCGTGTGAATATCAACTTAAGTACCACGGAAGATTTGGGTGAAC AATTGGTATTGTATCCCGCAAAGCATTTTGTAACTCCCAAGCATCGTTTA GAAAAAGCGATTGAGATGATTGAAGAAGAAACTCGTTCGTCAGTACAGGT TTTTATTGAAAATGGCAAAATATTGGAGGCCACTCGTCTCCAGGAAAGGG TTGAAGTGGACATGAAAATGTTGCGAAACGTTGGCTTTTGCCAGGGTATT GAGAATTACTCCATGTATCTCTCAGGGCGGGATTGTAGTCAACCTCCAGA GACTCTTCTTGACTACATGCCAAGAGATGGAAAATGGCTGTTGTTCATAG ATGAAAGTCACGTTACGGTTCCTCAACTGGGTGGCATGTATGCTGGAAAT GCAGCAAGAAAGAAGAAACTTGTACAACATGGCTTCCGACTTCCATCTGC ATTGGAAAACCGTCCGTTAAGCTCTCGAGAGTTCTGGAAAAAGGCTCATC AGACAATCTTTGTTTCCGCCACTCCTGGCTACTTTGAGCGAAAAAGAAGC GGATCTGAGGGGATGATAGAGGCTGTTATCCGCCCTACTGGTGTACTGGA TCCTACTGTTGAAGTAGTTGGAACAAAATGTCAAATTGAACATCTCACAT GTCAGCTAGCCAAGGCTGCTTCTGATGGCGGGAAAGCTATTGTTACCACT ATAACAAAACGCTTTGCTGAAGATTTGGCTCATTGTCTAGCTAGCAAACC GCCCGTTAAACCCATTCTTGGAAGACCCTTAAACGTCGCTTTCTTGCATT CTGGAATCGACTCCGTCAGTCGCATGCACGTCCTGGAAGCCATGAGGGCG AGTTCCCCCGAAGAGTTTTCTCATGGTCTCCATTCTAATTCCGGTGAGAA TCGGCATCCTCTTGATGTCGTAGTTGGTGTAAATTTACTACGCGAAGGGA TTGACTTTCCTGCAGTTCAGCTCGTTGCAATTTTGGACGCTGACTCGGAA GGTTTTTTGAGGGGAGAAACTGCCCTAATTCAGATGATGGGCAGAGCAGC TCGCAACGTCCAAGGTCATGTCATAATGTACGCCGACACTATAACTTTCG CAATGCGACGGGCCATGGATGAGACCGCAAGGCGAAGGAAATTACAGATT GCCTACAACTCTTTACATGGTGTGAATCCCTCTCCCGTCAGAGGGCCCAA CCCAATCAATAGTGAACAAGCTGCCCCTCTCTTAGAACGTATCAGAAAGA TGAAGGATAAAGCACGCCACTCCACGTCTCAATCATATCACCCATCTGCT CTATCAAAAGACTCACGAGCACGTTCGACAGCAAAAGAAGAATCCAGCTC TGAGTTGGATGCGGAAGCAATTCGAGAGAAGATGCTAACAGCCGCCGCAT CAGAAGACTTTGAGACGGCCGCTCTCTTACGAGATCGCCTGGTTTTGATG GGTGTTCTGAAGCGATAG back to topprotein sequence of Gchil3193.t1 >Gchil3193.t1 ID=Gchil3193.t1|Name=Gchil3193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=856bp
MALLFVFPPALPSSHRSIPRSSVRCNRAAHKPPTPTLPPSSPSLPPPFRE VSRSPPGLTVLYSRADSPITPSNLPQLLAFVRERPRVLLAVAPHVTLPRG PSEALASLGVRLVRRSVLSGPPRRARTTFLQPLYRGRPAVRKHRFELHAP YALAGSQSHAVQCLADGLLQQGKVFQTLAGVTGSGKSYMMASVITAAQVP TLILAPNKTLAAQLYNQFKLFFPRNRVEFFVSNFKHYQPEAYLPSCDKYI AKTSSIDHELDQLRHAATKSLFERNDTIVIASVSSIYGLGLPTEYLQAAF PARKGDSLTPQGFVDILKSINYVDDAMKIETTRGLFRQAQQVIDVSPPWE QPGILYRFSFDDSKLTALQRVNINLSTTEDLGEQLVLYPAKHFVTPKHRL EKAIEMIEEETRSSVQVFIENGKILEATRLQERVEVDMKMLRNVGFCQGI ENYSMYLSGRDCSQPPETLLDYMPRDGKWLLFIDESHVTVPQLGGMYAGN AARKKKLVQHGFRLPSALENRPLSSREFWKKAHQTIFVSATPGYFERKRS GSEGMIEAVIRPTGVLDPTVEVVGTKCQIEHLTCQLAKAASDGGKAIVTT ITKRFAEDLAHCLASKPPVKPILGRPLNVAFLHSGIDSVSRMHVLEAMRA SSPEEFSHGLHSNSGENRHPLDVVVGVNLLREGIDFPAVQLVAILDADSE GFLRGETALIQMMGRAARNVQGHVIMYADTITFAMRRAMDETARRRKLQI AYNSLHGVNPSPVRGPNPINSEQAAPLLERIRKMKDKARHSTSQSYHPSA LSKDSRARSTAKEESSSELDAEAIREKMLTAAASEDFETAALLRDRLVLM GVLKR* back to topmRNA from alignment at tig00004382_pilon:775852..778419- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil3193.t1 ID=Gchil3193.t1|Name=Gchil3193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2568bp|location=Sequence derived from alignment at tig00004382_pilon:775852..778419- (Gracilaria chilensis NLEC103_M9 male) ATGGCTCTGCTCTTCGTCTTCCCACCAGCCCTACCCTCGTCACATCGATC
GATTCCTCGCAGCTCTGTGCGATGCAATCGCGCCGCTCATAAGCCTCCAA
CACCAACATTGCCTCCTTCGTCCCCCTCTCTCCCGCCACCGTTCCGCGAG
GTTTCACGCTCGCCACCGGGTCTTACTGTCCTGTACTCTCGCGCCGACTC
CCCCATCACCCCCTCGAACCTGCCACAGCTGCTCGCATTCGTGCGCGAGC
GCCCGCGCGTGCTTCTTGCTGTCGCTCCACATGTCACTCTGCCACGCGGC
CCGTCCGAGGCGCTAGCCAGCCTGGGCGTTCGTCTTGTTCGCCGCTCCGT
TTTGTCTGGCCCGCCTCGACGAGCTCGCACAACGTTTTTGCAACCATTAT
ATCGCGGGCGCCCTGCCGTCCGCAAACACCGATTCGAATTACACGCTCCG
TACGCACTTGCTGGCAGCCAGTCTCATGCTGTGCAATGCTTGGCGGACGG
TCTGTTGCAGCAGGGTAAGGTTTTTCAGACCCTCGCTGGGGTGACTGGGT
CCGGTAAAAGTTATATGATGGCCAGTGTCATCACGGCAGCTCAGGTTCCC
ACTCTTATCTTGGCACCTAACAAGACACTCGCTGCTCAGCTGTACAACCA
GTTCAAATTATTTTTCCCGCGAAACCGGGTTGAGTTTTTTGTGTCCAACT
TCAAGCACTACCAGCCCGAAGCTTACTTGCCTTCCTGTGACAAGTATATT
GCGAAGACCAGCTCAATTGACCACGAGTTGGATCAGCTCCGGCACGCTGC
CACAAAGAGTCTATTCGAAAGAAATGATACCATTGTCATAGCCAGCGTTA
GTTCCATTTATGGTTTGGGTTTGCCCACCGAATACCTTCAAGCCGCCTTC
CCTGCTCGAAAAGGTGACTCCTTGACACCACAAGGTTTTGTAGACATATT
AAAGAGCATCAACTATGTTGATGACGCAATGAAAATAGAAACGACAAGAG
GGCTATTTCGTCAAGCCCAGCAAGTCATCGATGTCTCACCCCCATGGGAG
CAACCTGGAATTCTTTACCGATTCAGTTTTGATGATTCTAAACTGACAGC
ATTGCAGCGTGTGAATATCAACTTAAGTACCACGGAAGATTTGGGTGAAC
AATTGGTATTGTATCCCGCAAAGCATTTTGTAACTCCCAAGCATCGTTTA
GAAAAAGCGATTGAGATGATTGAAGAAGAAACTCGTTCGTCAGTACAGGT
TTTTATTGAAAATGGCAAAATATTGGAGGCCACTCGTCTCCAGGAAAGGG
TTGAAGTGGACATGAAAATGTTGCGAAACGTTGGCTTTTGCCAGGGTATT
GAGAATTACTCCATGTATCTCTCAGGGCGGGATTGTAGTCAACCTCCAGA
GACTCTTCTTGACTACATGCCAAGAGATGGAAAATGGCTGTTGTTCATAG
ATGAAAGTCACGTTACGGTTCCTCAACTGGGTGGCATGTATGCTGGAAAT
GCAGCAAGAAAGAAGAAACTTGTACAACATGGCTTCCGACTTCCATCTGC
ATTGGAAAACCGTCCGTTAAGCTCTCGAGAGTTCTGGAAAAAGGCTCATC
AGACAATCTTTGTTTCCGCCACTCCTGGCTACTTTGAGCGAAAAAGAAGC
GGATCTGAGGGGATGATAGAGGCTGTTATCCGCCCTACTGGTGTACTGGA
TCCTACTGTTGAAGTAGTTGGAACAAAATGTCAAATTGAACATCTCACAT
GTCAGCTAGCCAAGGCTGCTTCTGATGGCGGGAAAGCTATTGTTACCACT
ATAACAAAACGCTTTGCTGAAGATTTGGCTCATTGTCTAGCTAGCAAACC
GCCCGTTAAACCCATTCTTGGAAGACCCTTAAACGTCGCTTTCTTGCATT
CTGGAATCGACTCCGTCAGTCGCATGCACGTCCTGGAAGCCATGAGGGCG
AGTTCCCCCGAAGAGTTTTCTCATGGTCTCCATTCTAATTCCGGTGAGAA
TCGGCATCCTCTTGATGTCGTAGTTGGTGTAAATTTACTACGCGAAGGGA
TTGACTTTCCTGCAGTTCAGCTCGTTGCAATTTTGGACGCTGACTCGGAA
GGTTTTTTGAGGGGAGAAACTGCCCTAATTCAGATGATGGGCAGAGCAGC
TCGCAACGTCCAAGGTCATGTCATAATGTACGCCGACACTATAACTTTCG
CAATGCGACGGGCCATGGATGAGACCGCAAGGCGAAGGAAATTACAGATT
GCCTACAACTCTTTACATGGTGTGAATCCCTCTCCCGTCAGAGGGCCCAA
CCCAATCAATAGTGAACAAGCTGCCCCTCTCTTAGAACGTATCAGAAAGA
TGAAGGATAAAGCACGCCACTCCACGTCTCAATCATATCACCCATCTGCT
CTATCAAAAGACTCACGAGCACGTTCGACAGCAAAAGAAGAATCCAGCTC
TGAGTTGGATGCGGAAGCAATTCGAGAGAAGATGCTAACAGCCGCCGCAT
CAGAAGACTTTGAGACGGCCGCTCTCTTACGAGATCGCCTGGTTTTGATG
GGTGTTCTGAAGCGATAG back to topCoding sequence (CDS) from alignment at tig00004382_pilon:775852..778419- >Gchil3193.t1 ID=Gchil3193.t1|Name=Gchil3193.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2568bp|location=Sequence derived from alignment at tig00004382_pilon:775852..778419- (Gracilaria chilensis NLEC103_M9 male) ATGGCTCTGCTCTTCGTCTTCCCACCAGCCCTACCCTCGTCACATCGATC GATTCCTCGCAGCTCTGTGCGATGCAATCGCGCCGCTCATAAGCCTCCAA CACCAACATTGCCTCCTTCGTCCCCCTCTCTCCCGCCACCGTTCCGCGAG GTTTCACGCTCGCCACCGGGTCTTACTGTCCTGTACTCTCGCGCCGACTC CCCCATCACCCCCTCGAACCTGCCACAGCTGCTCGCATTCGTGCGCGAGC GCCCGCGCGTGCTTCTTGCTGTCGCTCCACATGTCACTCTGCCACGCGGC CCGTCCGAGGCGCTAGCCAGCCTGGGCGTTCGTCTTGTTCGCCGCTCCGT TTTGTCTGGCCCGCCTCGACGAGCTCGCACAACGTTTTTGCAACCATTAT ATCGCGGGCGCCCTGCCGTCCGCAAACACCGATTCGAATTACACGCTCCG TACGCACTTGCTGGCAGCCAGTCTCATGCTGTGCAATGCTTGGCGGACGG TCTGTTGCAGCAGGGTAAGGTTTTTCAGACCCTCGCTGGGGTGACTGGGT CCGGTAAAAGTTATATGATGGCCAGTGTCATCACGGCAGCTCAGGTTCCC ACTCTTATCTTGGCACCTAACAAGACACTCGCTGCTCAGCTGTACAACCA GTTCAAATTATTTTTCCCGCGAAACCGGGTTGAGTTTTTTGTGTCCAACT TCAAGCACTACCAGCCCGAAGCTTACTTGCCTTCCTGTGACAAGTATATT GCGAAGACCAGCTCAATTGACCACGAGTTGGATCAGCTCCGGCACGCTGC CACAAAGAGTCTATTCGAAAGAAATGATACCATTGTCATAGCCAGCGTTA GTTCCATTTATGGTTTGGGTTTGCCCACCGAATACCTTCAAGCCGCCTTC CCTGCTCGAAAAGGTGACTCCTTGACACCACAAGGTTTTGTAGACATATT AAAGAGCATCAACTATGTTGATGACGCAATGAAAATAGAAACGACAAGAG GGCTATTTCGTCAAGCCCAGCAAGTCATCGATGTCTCACCCCCATGGGAG CAACCTGGAATTCTTTACCGATTCAGTTTTGATGATTCTAAACTGACAGC ATTGCAGCGTGTGAATATCAACTTAAGTACCACGGAAGATTTGGGTGAAC AATTGGTATTGTATCCCGCAAAGCATTTTGTAACTCCCAAGCATCGTTTA GAAAAAGCGATTGAGATGATTGAAGAAGAAACTCGTTCGTCAGTACAGGT TTTTATTGAAAATGGCAAAATATTGGAGGCCACTCGTCTCCAGGAAAGGG TTGAAGTGGACATGAAAATGTTGCGAAACGTTGGCTTTTGCCAGGGTATT GAGAATTACTCCATGTATCTCTCAGGGCGGGATTGTAGTCAACCTCCAGA GACTCTTCTTGACTACATGCCAAGAGATGGAAAATGGCTGTTGTTCATAG ATGAAAGTCACGTTACGGTTCCTCAACTGGGTGGCATGTATGCTGGAAAT GCAGCAAGAAAGAAGAAACTTGTACAACATGGCTTCCGACTTCCATCTGC ATTGGAAAACCGTCCGTTAAGCTCTCGAGAGTTCTGGAAAAAGGCTCATC AGACAATCTTTGTTTCCGCCACTCCTGGCTACTTTGAGCGAAAAAGAAGC GGATCTGAGGGGATGATAGAGGCTGTTATCCGCCCTACTGGTGTACTGGA TCCTACTGTTGAAGTAGTTGGAACAAAATGTCAAATTGAACATCTCACAT GTCAGCTAGCCAAGGCTGCTTCTGATGGCGGGAAAGCTATTGTTACCACT ATAACAAAACGCTTTGCTGAAGATTTGGCTCATTGTCTAGCTAGCAAACC GCCCGTTAAACCCATTCTTGGAAGACCCTTAAACGTCGCTTTCTTGCATT CTGGAATCGACTCCGTCAGTCGCATGCACGTCCTGGAAGCCATGAGGGCG AGTTCCCCCGAAGAGTTTTCTCATGGTCTCCATTCTAATTCCGGTGAGAA TCGGCATCCTCTTGATGTCGTAGTTGGTGTAAATTTACTACGCGAAGGGA TTGACTTTCCTGCAGTTCAGCTCGTTGCAATTTTGGACGCTGACTCGGAA GGTTTTTTGAGGGGAGAAACTGCCCTAATTCAGATGATGGGCAGAGCAGC TCGCAACGTCCAAGGTCATGTCATAATGTACGCCGACACTATAACTTTCG CAATGCGACGGGCCATGGATGAGACCGCAAGGCGAAGGAAATTACAGATT GCCTACAACTCTTTACATGGTGTGAATCCCTCTCCCGTCAGAGGGCCCAA CCCAATCAATAGTGAACAAGCTGCCCCTCTCTTAGAACGTATCAGAAAGA TGAAGGATAAAGCACGCCACTCCACGTCTCAATCATATCACCCATCTGCT CTATCAAAAGACTCACGAGCACGTTCGACAGCAAAAGAAGAATCCAGCTC TGAGTTGGATGCGGAAGCAATTCGAGAGAAGATGCTAACAGCCGCCGCAT CAGAAGACTTTGAGACGGCCGCTCTCTTACGAGATCGCCTGGTTTTGATG GGTGTTCTGAAGCGATAG back to top
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