Gchil3190.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3190.t1
Unique Name	Gchil3190.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	762

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:742740..745025 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	696747.NIES39_E01890
Preferred name	rnb
PFAMs	RNB
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K01147
GOs	GO:0000175,GO:0000178,GO:0000932,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354,GO:1990904
Evalue	1.77e-98
EggNOG OGs	COG0557@1\|root,COG0557@2\|Bacteria,1G12H@1117\|Cyanobacteria,1H82G@1150\|Oscillatoriales
EC	3.1.13.1
Description	PFAM RNB domain
COG category	K
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3190	Gchil3190	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 742740..745025 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3190.t1.stop1	Gchil3190.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 742740..742742 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3190.t1.CDS1	Gchil3190.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 742740..745025 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3190.t1.exon1	Gchil3190.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 742740..745025 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3190.t1.start1	Gchil3190.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 745023..745025 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3190.t1	Gchil3190.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 742740..745025 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:742740..745025-
coding sequence from alignment at tig00004382_pilon:742740..745025-

mRNA sequence

>Gchil3190.t1 ID=Gchil3190.t1|Name=Gchil3190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp
MGVKPVFKQLYVIMAAVTNSLAIEAGSYLHVRSGSNIRLTRAVRPDGKRN
WIVQDSSGSEFSVNPKQILLALRSNSVTTLPEDLRIVENWIQTRAEEYEE
LLELSWEEFSSEEDLVDIHRICSLLFSDESALSVLTTHLLLENDDVFFKS
RNIKGSVMYEARSPKIVEDIKAQKVEQARKSERDQFRKHTLQKAYAICSL
EHLRNSFSEDEMQTLVMSLRDMAIELDNGKYEGDTRYAFTANNNFSLFDK
EARTLVQMTMSALSKSVSPLSAFDILVAWKILSKHENLTMLRTGLDQRRM
FPAPIVDAAENIISSPPSDIDRDRRTDLRHHLAFAIDSADTTEVDDAIGF
DPESNLVYVHVADPSRYFECTKDDVLQEALRRTRTIYLPNEKLIMFPEKL
ATELFSLTGELWDGTALSFSFGINEDGVVDEHSMRVQPTLIPKPFRLTYE
QAEKAIEDDTNRHHSLLNQLHKLAVRRRKWREMEGGAINVDTPFSCIEVT
DTGNDHPEVNIRTGRSDTASQKLVSELMITACTVGAYVAKEASLPFPYRS
QEPFDYPDDDVIEAIPNGPARAAMVFKNANASVISIEPKEHASLGLDYYS
QVTSPIRRSLDLIAHFQLKSLIRGEEAPYSIDDILREIGRTQELWRDARA
LENKTNKYWQLEFLRRMGPNVTHGVTFVKSLRDDSRLGVVHFEDYGFQLV
ATVPRRTKLGASLCVRVPVVNPRTGEVRAESVLNSELDFDEMFTEGLNDD
VLSDITEDELL*

spliced messenger RNA

>Gchil3190.t1 ID=Gchil3190.t1|Name=Gchil3190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004382_pilon:742740..745025- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTAAAGCCAGTTTTTAAACAACTATACGTAATCATGGCGGCTGT
TACCAATTCGCTCGCAATCGAGGCTGGTTCCTACCTGCACGTGCGTAGCG
GTTCGAATATCCGTTTAACTCGCGCAGTGCGACCAGACGGAAAACGGAAC
TGGATAGTGCAAGATTCCTCTGGCTCCGAGTTTTCCGTCAATCCTAAGCA
GATACTCCTCGCGCTCAGATCTAATTCCGTGACTACCCTCCCAGAAGATC
TTAGAATCGTAGAGAATTGGATTCAAACTCGAGCAGAGGAATATGAAGAA
TTGTTGGAATTATCGTGGGAAGAATTTAGTTCTGAGGAGGATCTAGTAGA
CATTCATCGAATTTGCTCCCTATTATTCAGCGACGAAAGTGCGCTATCAG
TTCTGACCACACATTTACTGTTGGAAAACGACGATGTCTTCTTCAAAAGC
CGAAACATTAAGGGCTCTGTTATGTACGAAGCACGATCGCCTAAGATCGT
TGAGGATATCAAAGCACAGAAAGTAGAACAGGCAAGGAAATCTGAAAGGG
ATCAATTTAGAAAACATACTCTTCAAAAGGCTTATGCAATCTGCAGTTTA
GAACATTTACGGAATTCTTTTTCCGAAGATGAAATGCAGACATTAGTAAT
GTCACTGCGAGACATGGCCATTGAGCTTGATAACGGCAAATACGAGGGGG
ACACCAGATACGCATTTACGGCTAATAACAACTTCTCTTTGTTCGACAAG
GAGGCAAGAACTCTTGTTCAAATGACAATGTCCGCTCTTTCGAAGTCCGT
TTCCCCGCTATCCGCCTTCGACATTCTCGTCGCATGGAAAATACTGTCAA
AACATGAAAATCTTACAATGCTTCGAACTGGCTTGGATCAGAGACGAATG
TTTCCGGCGCCAATAGTAGATGCTGCGGAAAATATCATTTCGAGTCCCCC
ATCAGACATCGATCGGGACAGAAGAACAGATCTGCGTCATCATCTTGCAT
TTGCAATTGATAGCGCGGACACTACAGAAGTTGATGACGCCATCGGTTTC
GACCCTGAATCTAACCTGGTTTACGTGCATGTCGCAGATCCATCTCGGTA
CTTTGAATGCACCAAAGATGATGTTCTCCAGGAAGCACTTCGACGCACTA
GGACCATCTACTTGCCAAATGAAAAGCTGATTATGTTCCCTGAAAAACTT
GCGACCGAGCTTTTTTCATTAACGGGAGAATTGTGGGATGGGACTGCGTT
GAGCTTTTCGTTTGGCATTAATGAAGACGGAGTTGTCGACGAGCATTCCA
TGCGCGTGCAACCCACGCTTATTCCTAAACCTTTTCGACTTACCTATGAA
CAAGCAGAAAAGGCGATCGAAGATGACACAAACAGACATCATTCGCTTCT
AAATCAGCTTCATAAACTCGCAGTGCGACGCAGAAAGTGGCGTGAAATGG
AAGGAGGTGCAATCAATGTCGACACTCCCTTTTCGTGCATCGAAGTGACA
GACACAGGCAATGATCATCCAGAAGTCAATATCCGAACGGGACGATCAGA
TACAGCTTCACAGAAACTTGTTTCCGAGCTGATGATAACTGCCTGCACTG
TTGGCGCTTATGTCGCCAAAGAAGCTAGCCTTCCGTTTCCTTATCGAAGT
CAAGAACCATTTGACTATCCTGACGATGACGTCATCGAGGCGATTCCAAA
CGGTCCAGCCCGGGCGGCAATGGTTTTCAAAAACGCTAATGCTTCGGTGA
TATCCATAGAGCCAAAGGAACACGCATCCTTGGGCTTAGATTATTATTCG
CAGGTGACCTCTCCAATTCGACGTAGCCTTGATCTGATAGCACACTTTCA
GCTGAAATCCCTCATCAGAGGCGAAGAAGCTCCCTACTCAATTGACGACA
TCCTGCGTGAAATAGGCCGGACTCAAGAGCTTTGGCGCGATGCAAGGGCG
CTAGAAAACAAGACGAATAAGTACTGGCAGCTAGAGTTCTTGAGGCGAAT
GGGTCCAAATGTAACACACGGTGTAACCTTCGTGAAAAGTCTCAGAGACG
ATAGTCGCCTGGGCGTTGTTCATTTTGAAGATTATGGGTTCCAGCTGGTA
GCGACTGTCCCTCGTAGAACAAAATTAGGAGCATCTTTATGTGTAAGAGT
ACCCGTTGTGAATCCAAGAACAGGAGAAGTGCGAGCAGAAAGTGTGTTGA
ACTCTGAACTGGACTTTGATGAAATGTTCACTGAGGGGCTGAATGATGAT
GTTCTGTCTGATATCACAGAAGATGAGCTATTGTAG

protein sequence of Gchil3190.t1

>Gchil3190.t1 ID=Gchil3190.t1|Name=Gchil3190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=762bp
MGVKPVFKQLYVIMAAVTNSLAIEAGSYLHVRSGSNIRLTRAVRPDGKRN
WIVQDSSGSEFSVNPKQILLALRSNSVTTLPEDLRIVENWIQTRAEEYEE
LLELSWEEFSSEEDLVDIHRICSLLFSDESALSVLTTHLLLENDDVFFKS
RNIKGSVMYEARSPKIVEDIKAQKVEQARKSERDQFRKHTLQKAYAICSL
EHLRNSFSEDEMQTLVMSLRDMAIELDNGKYEGDTRYAFTANNNFSLFDK
EARTLVQMTMSALSKSVSPLSAFDILVAWKILSKHENLTMLRTGLDQRRM
FPAPIVDAAENIISSPPSDIDRDRRTDLRHHLAFAIDSADTTEVDDAIGF
DPESNLVYVHVADPSRYFECTKDDVLQEALRRTRTIYLPNEKLIMFPEKL
ATELFSLTGELWDGTALSFSFGINEDGVVDEHSMRVQPTLIPKPFRLTYE
QAEKAIEDDTNRHHSLLNQLHKLAVRRRKWREMEGGAINVDTPFSCIEVT
DTGNDHPEVNIRTGRSDTASQKLVSELMITACTVGAYVAKEASLPFPYRS
QEPFDYPDDDVIEAIPNGPARAAMVFKNANASVISIEPKEHASLGLDYYS
QVTSPIRRSLDLIAHFQLKSLIRGEEAPYSIDDILREIGRTQELWRDARA
LENKTNKYWQLEFLRRMGPNVTHGVTFVKSLRDDSRLGVVHFEDYGFQLV
ATVPRRTKLGASLCVRVPVVNPRTGEVRAESVLNSELDFDEMFTEGLNDD
VLSDITEDELL*

mRNA from alignment at tig00004382_pilon:742740..745025-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3190.t1 ID=Gchil3190.t1|Name=Gchil3190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at tig00004382_pilon:742740..745025- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGTAAAGCCAGTTTTTAAACAACTATACGTAATCATGGCGGCTGT
TACCAATTCGCTCGCAATCGAGGCTGGTTCCTACCTGCACGTGCGTAGCG
GTTCGAATATCCGTTTAACTCGCGCAGTGCGACCAGACGGAAAACGGAAC
TGGATAGTGCAAGATTCCTCTGGCTCCGAGTTTTCCGTCAATCCTAAGCA
GATACTCCTCGCGCTCAGATCTAATTCCGTGACTACCCTCCCAGAAGATC
TTAGAATCGTAGAGAATTGGATTCAAACTCGAGCAGAGGAATATGAAGAA
TTGTTGGAATTATCGTGGGAAGAATTTAGTTCTGAGGAGGATCTAGTAGA
CATTCATCGAATTTGCTCCCTATTATTCAGCGACGAAAGTGCGCTATCAG
TTCTGACCACACATTTACTGTTGGAAAACGACGATGTCTTCTTCAAAAGC
CGAAACATTAAGGGCTCTGTTATGTACGAAGCACGATCGCCTAAGATCGT
TGAGGATATCAAAGCACAGAAAGTAGAACAGGCAAGGAAATCTGAAAGGG
ATCAATTTAGAAAACATACTCTTCAAAAGGCTTATGCAATCTGCAGTTTA
GAACATTTACGGAATTCTTTTTCCGAAGATGAAATGCAGACATTAGTAAT
GTCACTGCGAGACATGGCCATTGAGCTTGATAACGGCAAATACGAGGGGG
ACACCAGATACGCATTTACGGCTAATAACAACTTCTCTTTGTTCGACAAG
GAGGCAAGAACTCTTGTTCAAATGACAATGTCCGCTCTTTCGAAGTCCGT
TTCCCCGCTATCCGCCTTCGACATTCTCGTCGCATGGAAAATACTGTCAA
AACATGAAAATCTTACAATGCTTCGAACTGGCTTGGATCAGAGACGAATG
TTTCCGGCGCCAATAGTAGATGCTGCGGAAAATATCATTTCGAGTCCCCC
ATCAGACATCGATCGGGACAGAAGAACAGATCTGCGTCATCATCTTGCAT
TTGCAATTGATAGCGCGGACACTACAGAAGTTGATGACGCCATCGGTTTC
GACCCTGAATCTAACCTGGTTTACGTGCATGTCGCAGATCCATCTCGGTA
CTTTGAATGCACCAAAGATGATGTTCTCCAGGAAGCACTTCGACGCACTA
GGACCATCTACTTGCCAAATGAAAAGCTGATTATGTTCCCTGAAAAACTT
GCGACCGAGCTTTTTTCATTAACGGGAGAATTGTGGGATGGGACTGCGTT
GAGCTTTTCGTTTGGCATTAATGAAGACGGAGTTGTCGACGAGCATTCCA
TGCGCGTGCAACCCACGCTTATTCCTAAACCTTTTCGACTTACCTATGAA
CAAGCAGAAAAGGCGATCGAAGATGACACAAACAGACATCATTCGCTTCT
AAATCAGCTTCATAAACTCGCAGTGCGACGCAGAAAGTGGCGTGAAATGG
AAGGAGGTGCAATCAATGTCGACACTCCCTTTTCGTGCATCGAAGTGACA
GACACAGGCAATGATCATCCAGAAGTCAATATCCGAACGGGACGATCAGA
TACAGCTTCACAGAAACTTGTTTCCGAGCTGATGATAACTGCCTGCACTG
TTGGCGCTTATGTCGCCAAAGAAGCTAGCCTTCCGTTTCCTTATCGAAGT
CAAGAACCATTTGACTATCCTGACGATGACGTCATCGAGGCGATTCCAAA
CGGTCCAGCCCGGGCGGCAATGGTTTTCAAAAACGCTAATGCTTCGGTGA
TATCCATAGAGCCAAAGGAACACGCATCCTTGGGCTTAGATTATTATTCG
CAGGTGACCTCTCCAATTCGACGTAGCCTTGATCTGATAGCACACTTTCA
GCTGAAATCCCTCATCAGAGGCGAAGAAGCTCCCTACTCAATTGACGACA
TCCTGCGTGAAATAGGCCGGACTCAAGAGCTTTGGCGCGATGCAAGGGCG
CTAGAAAACAAGACGAATAAGTACTGGCAGCTAGAGTTCTTGAGGCGAAT
GGGTCCAAATGTAACACACGGTGTAACCTTCGTGAAAAGTCTCAGAGACG
ATAGTCGCCTGGGCGTTGTTCATTTTGAAGATTATGGGTTCCAGCTGGTA
GCGACTGTCCCTCGTAGAACAAAATTAGGAGCATCTTTATGTGTAAGAGT
ACCCGTTGTGAATCCAAGAACAGGAGAAGTGCGAGCAGAAAGTGTGTTGA
ACTCTGAACTGGACTTTGATGAAATGTTCACTGAGGGGCTGAATGATGAT
GTTCTGTCTGATATCACAGAAGATGAGCTATTGTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:742740..745025-

>Gchil3190.t1 ID=Gchil3190.t1|Name=Gchil3190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2286bp|location=Sequence derived from alignment at tig00004382_pilon:742740..745025- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGTAAAGCCAGTTTTTAAACAACTATACGTAATCATGGCGGCTGT
TACCAATTCGCTCGCAATCGAGGCTGGTTCCTACCTGCACGTGCGTAGCG
GTTCGAATATCCGTTTAACTCGCGCAGTGCGACCAGACGGAAAACGGAAC
TGGATAGTGCAAGATTCCTCTGGCTCCGAGTTTTCCGTCAATCCTAAGCA
GATACTCCTCGCGCTCAGATCTAATTCCGTGACTACCCTCCCAGAAGATC
TTAGAATCGTAGAGAATTGGATTCAAACTCGAGCAGAGGAATATGAAGAA
TTGTTGGAATTATCGTGGGAAGAATTTAGTTCTGAGGAGGATCTAGTAGA
CATTCATCGAATTTGCTCCCTATTATTCAGCGACGAAAGTGCGCTATCAG
TTCTGACCACACATTTACTGTTGGAAAACGACGATGTCTTCTTCAAAAGC
CGAAACATTAAGGGCTCTGTTATGTACGAAGCACGATCGCCTAAGATCGT
TGAGGATATCAAAGCACAGAAAGTAGAACAGGCAAGGAAATCTGAAAGGG
ATCAATTTAGAAAACATACTCTTCAAAAGGCTTATGCAATCTGCAGTTTA
GAACATTTACGGAATTCTTTTTCCGAAGATGAAATGCAGACATTAGTAAT
GTCACTGCGAGACATGGCCATTGAGCTTGATAACGGCAAATACGAGGGGG
ACACCAGATACGCATTTACGGCTAATAACAACTTCTCTTTGTTCGACAAG
GAGGCAAGAACTCTTGTTCAAATGACAATGTCCGCTCTTTCGAAGTCCGT
TTCCCCGCTATCCGCCTTCGACATTCTCGTCGCATGGAAAATACTGTCAA
AACATGAAAATCTTACAATGCTTCGAACTGGCTTGGATCAGAGACGAATG
TTTCCGGCGCCAATAGTAGATGCTGCGGAAAATATCATTTCGAGTCCCCC
ATCAGACATCGATCGGGACAGAAGAACAGATCTGCGTCATCATCTTGCAT
TTGCAATTGATAGCGCGGACACTACAGAAGTTGATGACGCCATCGGTTTC
GACCCTGAATCTAACCTGGTTTACGTGCATGTCGCAGATCCATCTCGGTA
CTTTGAATGCACCAAAGATGATGTTCTCCAGGAAGCACTTCGACGCACTA
GGACCATCTACTTGCCAAATGAAAAGCTGATTATGTTCCCTGAAAAACTT
GCGACCGAGCTTTTTTCATTAACGGGAGAATTGTGGGATGGGACTGCGTT
GAGCTTTTCGTTTGGCATTAATGAAGACGGAGTTGTCGACGAGCATTCCA
TGCGCGTGCAACCCACGCTTATTCCTAAACCTTTTCGACTTACCTATGAA
CAAGCAGAAAAGGCGATCGAAGATGACACAAACAGACATCATTCGCTTCT
AAATCAGCTTCATAAACTCGCAGTGCGACGCAGAAAGTGGCGTGAAATGG
AAGGAGGTGCAATCAATGTCGACACTCCCTTTTCGTGCATCGAAGTGACA
GACACAGGCAATGATCATCCAGAAGTCAATATCCGAACGGGACGATCAGA
TACAGCTTCACAGAAACTTGTTTCCGAGCTGATGATAACTGCCTGCACTG
TTGGCGCTTATGTCGCCAAAGAAGCTAGCCTTCCGTTTCCTTATCGAAGT
CAAGAACCATTTGACTATCCTGACGATGACGTCATCGAGGCGATTCCAAA
CGGTCCAGCCCGGGCGGCAATGGTTTTCAAAAACGCTAATGCTTCGGTGA
TATCCATAGAGCCAAAGGAACACGCATCCTTGGGCTTAGATTATTATTCG
CAGGTGACCTCTCCAATTCGACGTAGCCTTGATCTGATAGCACACTTTCA
GCTGAAATCCCTCATCAGAGGCGAAGAAGCTCCCTACTCAATTGACGACA
TCCTGCGTGAAATAGGCCGGACTCAAGAGCTTTGGCGCGATGCAAGGGCG
CTAGAAAACAAGACGAATAAGTACTGGCAGCTAGAGTTCTTGAGGCGAAT
GGGTCCAAATGTAACACACGGTGTAACCTTCGTGAAAAGTCTCAGAGACG
ATAGTCGCCTGGGCGTTGTTCATTTTGAAGATTATGGGTTCCAGCTGGTA
GCGACTGTCCCTCGTAGAACAAAATTAGGAGCATCTTTATGTGTAAGAGT
ACCCGTTGTGAATCCAAGAACAGGAGAAGTGCGAGCAGAAAGTGTGTTGA
ACTCTGAACTGGACTTTGATGAAATGTTCACTGAGGGGCTGAATGATGAT
GTTCTGTCTGATATCACAGAAGATGAGCTATTGTAG