Gchil3181.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3181.t1
Unique NameGchil3181.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:691610..692740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc06g082510.2.1
PFAMsDAO,Myb_DNA-binding
Max annot lvl35493|Streptophyta
KEGG koko:K11111
KEGG ModuleM00424
Evalue3.88e-09
EggNOG OGs2CMZ8@1|root,2QSW7@2759|Eukaryota,37R4K@33090|Viridiplantae,3GFJJ@35493|Streptophyta,44NE4@71274|asterids
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3181Gchil3181Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 691610..692740 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3181.t1.stop1Gchil3181.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 691610..691612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3181.t1.CDS1Gchil3181.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 691610..692740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3181.t1.exon1Gchil3181.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 691610..692740 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3181.t1.start1Gchil3181.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 692738..692740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3181.t1Gchil3181.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 691610..692740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3181.t1 ID=Gchil3181.t1|Name=Gchil3181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=377bp
MHSKPARTRRRARVSTRRKTVRWSTREVDALLAGVRTHGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAVLAGESPPDPDPPATPPTRPSPQP
DSPSPLSVPHTSNETAADEEQSAQQPVSPQPSTQSPPPTVPLSEFPPVTP
EILTSPPFAPPTYNPITPNALSHGIYHSAALIAADYWQRISQHTMYGVGH
YAPMLPSSKQAQLAQSDDDDDDDDDDDDYHFDNESAPQAVYNPYSIAIAH
MYARMDPANFSHTLRRYTDVAAISTGPTAAETESYNDEERTSHEADCPND
PQDVDTKVGSSATGLSISFSSDRRSAHIKDADDAIVEGTLFGMEERNTST
SGDSDLALPLNDPLFVPMPTMATTMG*
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spliced messenger RNA

>Gchil3181.t1 ID=Gchil3181.t1|Name=Gchil3181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004382_pilon:691610..692740- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCCAAGCCCGCGCGCACGCGCAGGAGGGCGCGCGTTTCCACGCG
CCGCAAGACCGTACGCTGGTCGACGCGCGAGGTCGATGCACTTCTTGCCG
GCGTTCGCACTCATGGCGTCGGCAAGTGGGCGCGCATCCTACGCCACTCT
CCCGTCTTTAACGGCGTCAGGACCTCCGTCGATCTCAAGGACAAATGGCG
TAATCTCACCTCCCCCGTGCGCGCCGCCGTTCTTGCCGGCGAGTCACCGC
CTGATCCCGACCCTCCCGCCACACCCCCTACTAGGCCTTCGCCGCAGCCC
GACAGTCCTAGTCCGCTTTCTGTACCGCATACTAGTAACGAAACAGCTGC
GGATGAAGAACAGTCTGCACAGCAACCCGTTTCGCCACAGCCATCGACTC
AGTCTCCACCTCCAACCGTGCCGCTCTCCGAGTTCCCTCCCGTCACACCG
GAAATTCTAACTTCCCCGCCGTTTGCACCCCCCACCTACAACCCAATCAC
CCCAAATGCACTTTCTCACGGCATCTATCACTCTGCTGCTCTCATAGCTG
CAGATTACTGGCAACGAATTAGTCAGCACACTATGTACGGTGTTGGTCAT
TACGCACCCATGCTTCCGTCTTCCAAACAAGCGCAGCTCGCACAGAGCGA
TGATGATGATGATGATGATGATGATGATGATGACTATCATTTTGACAATG
AATCCGCACCGCAAGCAGTCTACAATCCCTATAGCATTGCCATCGCGCAC
ATGTATGCGAGAATGGACCCTGCAAACTTTAGTCATACCCTCCGCCGCTA
TACTGACGTTGCCGCGATCTCTACGGGCCCAACTGCAGCTGAAACTGAAT
CGTATAACGATGAAGAGCGCACTAGTCATGAGGCAGACTGCCCCAACGAT
CCTCAAGACGTAGATACCAAGGTTGGTTCCTCAGCCACCGGATTGAGTAT
TTCTTTCAGTTCGGATAGACGCTCAGCTCATATAAAGGACGCGGATGATG
CCATTGTCGAAGGAACTTTGTTCGGCATGGAGGAAAGAAACACATCCACT
TCGGGTGACTCTGATCTAGCTCTACCACTTAACGATCCCTTGTTCGTTCC
TATGCCAACCATGGCCACCACCATGGGCTGA
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protein sequence of Gchil3181.t1

>Gchil3181.t1 ID=Gchil3181.t1|Name=Gchil3181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=377bp
MHSKPARTRRRARVSTRRKTVRWSTREVDALLAGVRTHGVGKWARILRHS
PVFNGVRTSVDLKDKWRNLTSPVRAAVLAGESPPDPDPPATPPTRPSPQP
DSPSPLSVPHTSNETAADEEQSAQQPVSPQPSTQSPPPTVPLSEFPPVTP
EILTSPPFAPPTYNPITPNALSHGIYHSAALIAADYWQRISQHTMYGVGH
YAPMLPSSKQAQLAQSDDDDDDDDDDDDYHFDNESAPQAVYNPYSIAIAH
MYARMDPANFSHTLRRYTDVAAISTGPTAAETESYNDEERTSHEADCPND
PQDVDTKVGSSATGLSISFSSDRRSAHIKDADDAIVEGTLFGMEERNTST
SGDSDLALPLNDPLFVPMPTMATTMG*
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mRNA from alignment at tig00004382_pilon:691610..692740-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3181.t1 ID=Gchil3181.t1|Name=Gchil3181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00004382_pilon:691610..692740- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCCAAGCCCGCGCGCACGCGCAGGAGGGCGCGCGTTTCCACGCG
CCGCAAGACCGTACGCTGGTCGACGCGCGAGGTCGATGCACTTCTTGCCG
GCGTTCGCACTCATGGCGTCGGCAAGTGGGCGCGCATCCTACGCCACTCT
CCCGTCTTTAACGGCGTCAGGACCTCCGTCGATCTCAAGGACAAATGGCG
TAATCTCACCTCCCCCGTGCGCGCCGCCGTTCTTGCCGGCGAGTCACCGC
CTGATCCCGACCCTCCCGCCACACCCCCTACTAGGCCTTCGCCGCAGCCC
GACAGTCCTAGTCCGCTTTCTGTACCGCATACTAGTAACGAAACAGCTGC
GGATGAAGAACAGTCTGCACAGCAACCCGTTTCGCCACAGCCATCGACTC
AGTCTCCACCTCCAACCGTGCCGCTCTCCGAGTTCCCTCCCGTCACACCG
GAAATTCTAACTTCCCCGCCGTTTGCACCCCCCACCTACAACCCAATCAC
CCCAAATGCACTTTCTCACGGCATCTATCACTCTGCTGCTCTCATAGCTG
CAGATTACTGGCAACGAATTAGTCAGCACACTATGTACGGTGTTGGTCAT
TACGCACCCATGCTTCCGTCTTCCAAACAAGCGCAGCTCGCACAGAGCGA
TGATGATGATGATGATGATGATGATGATGATGACTATCATTTTGACAATG
AATCCGCACCGCAAGCAGTCTACAATCCCTATAGCATTGCCATCGCGCAC
ATGTATGCGAGAATGGACCCTGCAAACTTTAGTCATACCCTCCGCCGCTA
TACTGACGTTGCCGCGATCTCTACGGGCCCAACTGCAGCTGAAACTGAAT
CGTATAACGATGAAGAGCGCACTAGTCATGAGGCAGACTGCCCCAACGAT
CCTCAAGACGTAGATACCAAGGTTGGTTCCTCAGCCACCGGATTGAGTAT
TTCTTTCAGTTCGGATAGACGCTCAGCTCATATAAAGGACGCGGATGATG
CCATTGTCGAAGGAACTTTGTTCGGCATGGAGGAAAGAAACACATCCACT
TCGGGTGACTCTGATCTAGCTCTACCACTTAACGATCCCTTGTTCGTTCC
TATGCCAACCATGGCCACCACCATGGGCTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:691610..692740-

>Gchil3181.t1 ID=Gchil3181.t1|Name=Gchil3181.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00004382_pilon:691610..692740- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCCAAGCCCGCGCGCACGCGCAGGAGGGCGCGCGTTTCCACGCG
CCGCAAGACCGTACGCTGGTCGACGCGCGAGGTCGATGCACTTCTTGCCG
GCGTTCGCACTCATGGCGTCGGCAAGTGGGCGCGCATCCTACGCCACTCT
CCCGTCTTTAACGGCGTCAGGACCTCCGTCGATCTCAAGGACAAATGGCG
TAATCTCACCTCCCCCGTGCGCGCCGCCGTTCTTGCCGGCGAGTCACCGC
CTGATCCCGACCCTCCCGCCACACCCCCTACTAGGCCTTCGCCGCAGCCC
GACAGTCCTAGTCCGCTTTCTGTACCGCATACTAGTAACGAAACAGCTGC
GGATGAAGAACAGTCTGCACAGCAACCCGTTTCGCCACAGCCATCGACTC
AGTCTCCACCTCCAACCGTGCCGCTCTCCGAGTTCCCTCCCGTCACACCG
GAAATTCTAACTTCCCCGCCGTTTGCACCCCCCACCTACAACCCAATCAC
CCCAAATGCACTTTCTCACGGCATCTATCACTCTGCTGCTCTCATAGCTG
CAGATTACTGGCAACGAATTAGTCAGCACACTATGTACGGTGTTGGTCAT
TACGCACCCATGCTTCCGTCTTCCAAACAAGCGCAGCTCGCACAGAGCGA
TGATGATGATGATGATGATGATGATGATGATGACTATCATTTTGACAATG
AATCCGCACCGCAAGCAGTCTACAATCCCTATAGCATTGCCATCGCGCAC
ATGTATGCGAGAATGGACCCTGCAAACTTTAGTCATACCCTCCGCCGCTA
TACTGACGTTGCCGCGATCTCTACGGGCCCAACTGCAGCTGAAACTGAAT
CGTATAACGATGAAGAGCGCACTAGTCATGAGGCAGACTGCCCCAACGAT
CCTCAAGACGTAGATACCAAGGTTGGTTCCTCAGCCACCGGATTGAGTAT
TTCTTTCAGTTCGGATAGACGCTCAGCTCATATAAAGGACGCGGATGATG
CCATTGTCGAAGGAACTTTGTTCGGCATGGAGGAAAGAAACACATCCACT
TCGGGTGACTCTGATCTAGCTCTACCACTTAACGATCCCTTGTTCGTTCC
TATGCCAACCATGGCCACCACCATGGGCTGA
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