Gchil3178.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3178.t1
Unique Name	Gchil3178.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:621214..622356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707255.1
Preferred name	CPX1
PFAMs	Coprogen_oxidas
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00884
KEGG ko	ko:K00228
KEGG Reaction	R03220
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG Module	M00121
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048046,GO:0050896
Evalue	2.89e-169
EggNOG OGs	COG0408@1\|root,KOG1518@2759\|Eukaryota
EC	1.3.3.3
Description	coproporphyrinogen oxidase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3178	Gchil3178	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 621214..622356 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3178.t1.start1	Gchil3178.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 621214..621216 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3178.t1.CDS1	Gchil3178.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 621214..622356 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3178.t1.exon1	Gchil3178.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 621214..622356 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3178.t1.stop1	Gchil3178.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 622354..622356 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3178.t1	Gchil3178.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 621214..622356 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:621214..622356+
coding sequence from alignment at tig00004382_pilon:621214..622356+

mRNA sequence

>Gchil3178.t1 ID=Gchil3178.t1|Name=Gchil3178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp
MSNSAFVPMSTALLSPSAFEGQMCKRRANALCIRKRFPPILAPRLSMSTG
PIFTDHVPVAEKPETLVRPDESYGDKSMRTRFEKMIRSAQDDICAQVEAL
DGSKFQEDSWVRENGGGGISRVMQNGNVFEKAGVNVSVVYGTMPPEAVAA
ASARGVTRNVGYEPGEPVPFFAAGVSSVMHPWNPMAPTMHFNYRYFETDR
GLWWFGGGTDLTPSYVFEEDVKHFHSTLKACCDRHDKEYFPKFKKWCDDY
FLIKHRGERRGLGGIFFDDLNDRDASEILRFSEDCASNVCNAYLPIVEMR
KDSEYTEEQKRWQQLRRARYVEYNLVYDRGTVFGLKTGGRIESILMSLPL
TARWEYNHSPEPGSWEAQSLEFMKNPKDWV*

spliced messenger RNA

>Gchil3178.t1 ID=Gchil3178.t1|Name=Gchil3178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00004382_pilon:621214..622356+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAATTCTGCCTTCGTCCCAATGTCGACAGCTTTGCTGTCGCCCTC
GGCTTTCGAAGGGCAGATGTGTAAAAGGAGAGCCAATGCTCTTTGCATTC
GCAAACGTTTTCCGCCAATACTTGCACCTCGCTTGAGCATGTCTACTGGA
CCAATTTTTACTGATCATGTTCCCGTCGCTGAAAAGCCCGAGACACTTGT
TCGTCCAGATGAAAGTTATGGTGACAAATCGATGAGAACGCGATTCGAAA
AGATGATCAGGTCTGCTCAAGATGATATATGTGCACAAGTAGAAGCTTTG
GATGGCAGCAAGTTCCAAGAAGATTCATGGGTTCGAGAAAATGGAGGCGG
TGGCATCTCACGCGTCATGCAAAACGGAAACGTTTTTGAAAAGGCCGGTG
TTAATGTATCTGTCGTATATGGCACGATGCCTCCTGAAGCTGTCGCTGCT
GCCAGTGCGAGAGGAGTTACCCGGAATGTTGGATACGAGCCTGGTGAGCC
AGTCCCATTCTTTGCTGCAGGGGTTTCATCTGTTATGCATCCATGGAACC
CAATGGCCCCTACCATGCACTTCAATTATAGATACTTTGAAACAGATCGG
GGACTGTGGTGGTTTGGCGGGGGCACAGATCTTACTCCGTCGTATGTTTT
TGAGGAAGATGTCAAACATTTCCATTCCACATTGAAGGCCTGTTGTGACC
GTCATGACAAGGAGTACTTCCCGAAGTTCAAGAAGTGGTGTGATGACTAC
TTTCTAATCAAACATCGAGGAGAAAGAAGAGGTCTCGGAGGTATTTTCTT
TGACGATCTCAACGATAGAGATGCTAGTGAAATATTGAGATTTAGCGAGG
ATTGTGCTTCCAACGTTTGCAATGCATATTTACCAATTGTTGAAATGCGG
AAGGACTCCGAGTATACAGAGGAGCAAAAGAGATGGCAGCAACTGCGAAG
AGCAAGATATGTGGAGTATAATCTGGTATATGATCGAGGCACAGTTTTCG
GATTGAAGACTGGCGGCCGTATTGAGAGCATTCTTATGTCTCTTCCCCTG
ACGGCGAGATGGGAATACAACCATAGCCCAGAGCCAGGATCATGGGAAGC
ACAAAGTCTGGAGTTCATGAAGAATCCGAAGGATTGGGTATAG

protein sequence of Gchil3178.t1

>Gchil3178.t1 ID=Gchil3178.t1|Name=Gchil3178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=381bp
MSNSAFVPMSTALLSPSAFEGQMCKRRANALCIRKRFPPILAPRLSMSTG
PIFTDHVPVAEKPETLVRPDESYGDKSMRTRFEKMIRSAQDDICAQVEAL
DGSKFQEDSWVRENGGGGISRVMQNGNVFEKAGVNVSVVYGTMPPEAVAA
ASARGVTRNVGYEPGEPVPFFAAGVSSVMHPWNPMAPTMHFNYRYFETDR
GLWWFGGGTDLTPSYVFEEDVKHFHSTLKACCDRHDKEYFPKFKKWCDDY
FLIKHRGERRGLGGIFFDDLNDRDASEILRFSEDCASNVCNAYLPIVEMR
KDSEYTEEQKRWQQLRRARYVEYNLVYDRGTVFGLKTGGRIESILMSLPL
TARWEYNHSPEPGSWEAQSLEFMKNPKDWV*

mRNA from alignment at tig00004382_pilon:621214..622356+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3178.t1 ID=Gchil3178.t1|Name=Gchil3178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00004382_pilon:621214..622356+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAATTCTGCCTTCGTCCCAATGTCGACAGCTTTGCTGTCGCCCTC
GGCTTTCGAAGGGCAGATGTGTAAAAGGAGAGCCAATGCTCTTTGCATTC
GCAAACGTTTTCCGCCAATACTTGCACCTCGCTTGAGCATGTCTACTGGA
CCAATTTTTACTGATCATGTTCCCGTCGCTGAAAAGCCCGAGACACTTGT
TCGTCCAGATGAAAGTTATGGTGACAAATCGATGAGAACGCGATTCGAAA
AGATGATCAGGTCTGCTCAAGATGATATATGTGCACAAGTAGAAGCTTTG
GATGGCAGCAAGTTCCAAGAAGATTCATGGGTTCGAGAAAATGGAGGCGG
TGGCATCTCACGCGTCATGCAAAACGGAAACGTTTTTGAAAAGGCCGGTG
TTAATGTATCTGTCGTATATGGCACGATGCCTCCTGAAGCTGTCGCTGCT
GCCAGTGCGAGAGGAGTTACCCGGAATGTTGGATACGAGCCTGGTGAGCC
AGTCCCATTCTTTGCTGCAGGGGTTTCATCTGTTATGCATCCATGGAACC
CAATGGCCCCTACCATGCACTTCAATTATAGATACTTTGAAACAGATCGG
GGACTGTGGTGGTTTGGCGGGGGCACAGATCTTACTCCGTCGTATGTTTT
TGAGGAAGATGTCAAACATTTCCATTCCACATTGAAGGCCTGTTGTGACC
GTCATGACAAGGAGTACTTCCCGAAGTTCAAGAAGTGGTGTGATGACTAC
TTTCTAATCAAACATCGAGGAGAAAGAAGAGGTCTCGGAGGTATTTTCTT
TGACGATCTCAACGATAGAGATGCTAGTGAAATATTGAGATTTAGCGAGG
ATTGTGCTTCCAACGTTTGCAATGCATATTTACCAATTGTTGAAATGCGG
AAGGACTCCGAGTATACAGAGGAGCAAAAGAGATGGCAGCAACTGCGAAG
AGCAAGATATGTGGAGTATAATCTGGTATATGATCGAGGCACAGTTTTCG
GATTGAAGACTGGCGGCCGTATTGAGAGCATTCTTATGTCTCTTCCCCTG
ACGGCGAGATGGGAATACAACCATAGCCCAGAGCCAGGATCATGGGAAGC
ACAAAGTCTGGAGTTCATGAAGAATCCGAAGGATTGGGTATAG

Coding sequence (CDS) from alignment at tig00004382_pilon:621214..622356+

>Gchil3178.t1 ID=Gchil3178.t1|Name=Gchil3178.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00004382_pilon:621214..622356+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAATTCTGCCTTCGTCCCAATGTCGACAGCTTTGCTGTCGCCCTC
GGCTTTCGAAGGGCAGATGTGTAAAAGGAGAGCCAATGCTCTTTGCATTC
GCAAACGTTTTCCGCCAATACTTGCACCTCGCTTGAGCATGTCTACTGGA
CCAATTTTTACTGATCATGTTCCCGTCGCTGAAAAGCCCGAGACACTTGT
TCGTCCAGATGAAAGTTATGGTGACAAATCGATGAGAACGCGATTCGAAA
AGATGATCAGGTCTGCTCAAGATGATATATGTGCACAAGTAGAAGCTTTG
GATGGCAGCAAGTTCCAAGAAGATTCATGGGTTCGAGAAAATGGAGGCGG
TGGCATCTCACGCGTCATGCAAAACGGAAACGTTTTTGAAAAGGCCGGTG
TTAATGTATCTGTCGTATATGGCACGATGCCTCCTGAAGCTGTCGCTGCT
GCCAGTGCGAGAGGAGTTACCCGGAATGTTGGATACGAGCCTGGTGAGCC
AGTCCCATTCTTTGCTGCAGGGGTTTCATCTGTTATGCATCCATGGAACC
CAATGGCCCCTACCATGCACTTCAATTATAGATACTTTGAAACAGATCGG
GGACTGTGGTGGTTTGGCGGGGGCACAGATCTTACTCCGTCGTATGTTTT
TGAGGAAGATGTCAAACATTTCCATTCCACATTGAAGGCCTGTTGTGACC
GTCATGACAAGGAGTACTTCCCGAAGTTCAAGAAGTGGTGTGATGACTAC
TTTCTAATCAAACATCGAGGAGAAAGAAGAGGTCTCGGAGGTATTTTCTT
TGACGATCTCAACGATAGAGATGCTAGTGAAATATTGAGATTTAGCGAGG
ATTGTGCTTCCAACGTTTGCAATGCATATTTACCAATTGTTGAAATGCGG
AAGGACTCCGAGTATACAGAGGAGCAAAAGAGATGGCAGCAACTGCGAAG
AGCAAGATATGTGGAGTATAATCTGGTATATGATCGAGGCACAGTTTTCG
GATTGAAGACTGGCGGCCGTATTGAGAGCATTCTTATGTCTCTTCCCCTG
ACGGCGAGATGGGAATACAACCATAGCCCAGAGCCAGGATCATGGGAAGC
ACAAAGTCTGGAGTTCATGAAGAATCCGAAGGATTGGGTATAG