Gchil3177.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3177.t1
Unique NameGchil3177.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:620149..620570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.10756
PFAMsRNA_pol_L_2
Max annot lvl4776|Peronosporales
KEGG rclassRC02795
KEGG koko:K03008
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Evalue6.94e-32
EggNOG OGsCOG1761@1|root,KOG4392@2759|Eukaryota,3QFGX@4776|Peronosporales
DescriptionRNA polymerase Rpb3/Rpb11 dimerisation domain
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3177Gchil3177Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 620149..620570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3177.t1Gchil3177.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 620149..620570 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3177.t1.start1Gchil3177.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 620149..620151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3177.t1.CDS1Gchil3177.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 620149..620204 +
Gchil3177.t1.CDS2Gchil3177.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 620279..620570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3177.t1.exon1Gchil3177.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 620149..620204 +
Gchil3177.t1.exon2Gchil3177.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 620279..620570 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3177.t1.intron1Gchil3177.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 620205..620278 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3177.t1.stop1Gchil3177.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 620568..620570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3177.t1 ID=Gchil3177.t1|Name=Gchil3177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MTNAPEHFESWVLPEGIEKVTYTADTKIENCGVFRLEREDHTLANLLRMQ
LIRDPDVVFVGYKHPHPMDHHIELRVQTSSSTRAGKYLPPEAVRVALIDL
SSEVSRLTELAKRKR*
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spliced messenger RNA

>Gchil3177.t1 ID=Gchil3177.t1|Name=Gchil3177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004382_pilon:620149..620570+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACGCGCCCGAACATTTCGAATCATGGGTTCTACCCGAAGGTAT
CGAGAAAGTCACCTACACGGCAGACACCAAAATCGAAAACTGCGGCGTGT
TCCGACTTGAACGAGAAGACCACACACTTGCAAATCTGCTACGAATGCAA
TTAATACGAGATCCAGATGTAGTGTTCGTTGGCTACAAACACCCCCATCC
TATGGACCATCACATTGAGTTGAGGGTTCAGACGTCCAGCAGCACAAGGG
CTGGGAAGTATTTGCCCCCTGAAGCGGTTCGCGTGGCACTCATAGATCTA
TCATCAGAAGTCTCGCGTTTAACGGAGCTGGCAAAACGCAAGCGGTAG
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protein sequence of Gchil3177.t1

>Gchil3177.t1 ID=Gchil3177.t1|Name=Gchil3177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MTNAPEHFESWVLPEGIEKVTYTADTKIENCGVFRLEREDHTLANLLRMQ
LIRDPDVVFVGYKHPHPMDHHIELRVQTSSSTRAGKYLPPEAVRVALIDL
SSEVSRLTELAKRKR*
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mRNA from alignment at tig00004382_pilon:620149..620570+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3177.t1 ID=Gchil3177.t1|Name=Gchil3177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=422bp|location=Sequence derived from alignment at tig00004382_pilon:620149..620570+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGAACGCGCCCGAACATTTCGAATCATGGGTTCTACCCGAAGGTAT
CGAGAAGTATGTTCAAGTGAAGAGCGTTCCAATCCAAAAAAAAGCCGTGC
AAGTGCTAACTTTTGTTTCGTATTCGACAGAGTCACCTACACGGCAGACA
CCAAAATCGAAAACTGCGGCGTGTTCCGACTTGAACGAGAAGACCACACA
CTTGCAAATCTGCTACGAATGCAATTAATACGAGATCCAGATGTAGTGTT
CGTTGGCTACAAACACCCCCATCCTATGGACCATCACATTGAGTTGAGGG
TTCAGACGTCCAGCAGCACAAGGGCTGGGAAGTATTTGCCCCCTGAAGCG
GTTCGCGTGGCACTCATAGATCTATCATCAGAAGTCTCGCGTTTAACGGA
GCTGGCAAAACGCAAGCGGTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:620149..620570+

>Gchil3177.t1 ID=Gchil3177.t1|Name=Gchil3177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004382_pilon:620149..620570+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGAACGCGCCCGAACATTTCGAATCATGGGTTCTACCCGAAGGTAT
CGAGAAAGTCACCTACACGGCAGACACCAAAATCGAAAACTGCGGCGTGT
TCCGACTTGAACGAGAAGACCACACACTTGCAAATCTGCTACGAATGCAA
TTAATACGAGATCCAGATGTAGTGTTCGTTGGCTACAAACACCCCCATCC
TATGGACCATCACATTGAGTTGAGGGTTCAGACGTCCAGCAGCACAAGGG
CTGGGAAGTATTTGCCCCCTGAAGCGGTTCGCGTGGCACTCATAGATCTA
TCATCAGAAGTCTCGCGTTTAACGGAGCTGGCAAAACGCAAGCGGTAG
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