Gchil3174.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3174.t1
Unique NameGchil3174.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:612895..613488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000013860
PFAMsArf
Max annot lvl121069|Pythiales
Evalue3.38e-39
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota,1MB18@121069|Pythiales
DescriptionSource PGD
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3174Gchil3174Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 612895..613488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3174.t1.stop1Gchil3174.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 612895..612897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3174.t1.CDS1Gchil3174.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 612895..613488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3174.t1.exon1Gchil3174.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 612895..613488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3174.t1.start1Gchil3174.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 613486..613488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3174.t1Gchil3174.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 612895..613488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3174.t1 ID=Gchil3174.t1|Name=Gchil3174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=198bp
MGNCFSAQLGKRSRSRGVLILGLDGSGATTILYQLVFGKRMDTIPTLGVN
HEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRL
AAEELEKLYKTDKGAASIKDRPLLVLANKQDLPDAASVKVVHKVLRVDSL
NVMCSKVFPCTASDRQSLMKGVQWLTSELKQKKPVPNPLHAPNGAAA*
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spliced messenger RNA

>Gchil3174.t1 ID=Gchil3174.t1|Name=Gchil3174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004382_pilon:612895..613488- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACTGTTTTTCGGCGCAGTTGGGCAAGCGCTCACGATCGCGCGG
CGTGCTCATTCTCGGCTTGGATGGCTCGGGCGCCACCACTATTCTGTACC
AGCTCGTGTTCGGCAAGCGAATGGACACCATCCCCACCCTGGGCGTCAAC
CACGAGAAGATGCAGGTCGACGGTCTGGAGCTCGACTGCTGGGACGTGGG
CGGTTTGGACAAGGTCCGACCTCTGTGGAGACAGTGCTTCAAGGATGCTG
ACGCCGTCATATTCGTCGTAGACACCAGTGATTTGCCCAGGATGAGGCTG
GCTGCAGAAGAGTTGGAGAAGCTGTACAAGACGGATAAGGGCGCAGCTAG
CATCAAGGACAGGCCCTTGTTGGTGTTAGCCAACAAGCAGGACTTGCCGG
ACGCTGCTTCCGTCAAGGTTGTTCACAAGGTTCTCAGAGTCGATTCTCTC
AACGTCATGTGCTCGAAGGTATTTCCGTGCACGGCCAGTGATCGTCAGTC
GCTCATGAAGGGCGTACAGTGGCTCACTTCTGAGCTCAAGCAGAAGAAAC
CGGTTCCAAACCCTTTACATGCGCCGAACGGTGCTGCGGCGTAA
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protein sequence of Gchil3174.t1

>Gchil3174.t1 ID=Gchil3174.t1|Name=Gchil3174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MGNCFSAQLGKRSRSRGVLILGLDGSGATTILYQLVFGKRMDTIPTLGVN
HEKMQVDGLELDCWDVGGLDKVRPLWRQCFKDADAVIFVVDTSDLPRMRL
AAEELEKLYKTDKGAASIKDRPLLVLANKQDLPDAASVKVVHKVLRVDSL
NVMCSKVFPCTASDRQSLMKGVQWLTSELKQKKPVPNPLHAPNGAAA*
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mRNA from alignment at tig00004382_pilon:612895..613488-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3174.t1 ID=Gchil3174.t1|Name=Gchil3174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004382_pilon:612895..613488- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAACTGTTTTTCGGCGCAGTTGGGCAAGCGCTCACGATCGCGCGG
CGTGCTCATTCTCGGCTTGGATGGCTCGGGCGCCACCACTATTCTGTACC
AGCTCGTGTTCGGCAAGCGAATGGACACCATCCCCACCCTGGGCGTCAAC
CACGAGAAGATGCAGGTCGACGGTCTGGAGCTCGACTGCTGGGACGTGGG
CGGTTTGGACAAGGTCCGACCTCTGTGGAGACAGTGCTTCAAGGATGCTG
ACGCCGTCATATTCGTCGTAGACACCAGTGATTTGCCCAGGATGAGGCTG
GCTGCAGAAGAGTTGGAGAAGCTGTACAAGACGGATAAGGGCGCAGCTAG
CATCAAGGACAGGCCCTTGTTGGTGTTAGCCAACAAGCAGGACTTGCCGG
ACGCTGCTTCCGTCAAGGTTGTTCACAAGGTTCTCAGAGTCGATTCTCTC
AACGTCATGTGCTCGAAGGTATTTCCGTGCACGGCCAGTGATCGTCAGTC
GCTCATGAAGGGCGTACAGTGGCTCACTTCTGAGCTCAAGCAGAAGAAAC
CGGTTCCAAACCCTTTACATGCGCCGAACGGTGCTGCGGCGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:612895..613488-

>Gchil3174.t1 ID=Gchil3174.t1|Name=Gchil3174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00004382_pilon:612895..613488- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAACTGTTTTTCGGCGCAGTTGGGCAAGCGCTCACGATCGCGCGG
CGTGCTCATTCTCGGCTTGGATGGCTCGGGCGCCACCACTATTCTGTACC
AGCTCGTGTTCGGCAAGCGAATGGACACCATCCCCACCCTGGGCGTCAAC
CACGAGAAGATGCAGGTCGACGGTCTGGAGCTCGACTGCTGGGACGTGGG
CGGTTTGGACAAGGTCCGACCTCTGTGGAGACAGTGCTTCAAGGATGCTG
ACGCCGTCATATTCGTCGTAGACACCAGTGATTTGCCCAGGATGAGGCTG
GCTGCAGAAGAGTTGGAGAAGCTGTACAAGACGGATAAGGGCGCAGCTAG
CATCAAGGACAGGCCCTTGTTGGTGTTAGCCAACAAGCAGGACTTGCCGG
ACGCTGCTTCCGTCAAGGTTGTTCACAAGGTTCTCAGAGTCGATTCTCTC
AACGTCATGTGCTCGAAGGTATTTCCGTGCACGGCCAGTGATCGTCAGTC
GCTCATGAAGGGCGTACAGTGGCTCACTTCTGAGCTCAAGCAGAAGAAAC
CGGTTCCAAACCCTTTACATGCGCCGAACGGTGCTGCGGCGTAA
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