Gchil3173.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3173.t1
Unique NameGchil3173.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:611605..612204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue9.43e-25
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3173Gchil3173Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 611605..612204 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3173.t1.start1Gchil3173.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 611605..611607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3173.t1.CDS1Gchil3173.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 611605..612204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3173.t1.exon1Gchil3173.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 611605..612204 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3173.t1.stop1Gchil3173.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 612202..612204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3173.t1Gchil3173.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 611605..612204 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3173.t1 ID=Gchil3173.t1|Name=Gchil3173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=200bp
MPAGMCSACALRNVTPKGDFKNCKSIYNLDSAQCKSKLQEYAQKNQCDTK
RKSQVNEWSAASKQKLDYFVYAVCEQCCDCIPKGATAAQYGSRKNQKKLF
HPERGNCPAHAFYDICKVLPNIKYMALGNAPFKGGWGHACGHLRKWFNSP
AATNWLSNHNAKMIFNIKQFLGNVNVANQCGSKAVWTRCVDMEKKQRRI*
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spliced messenger RNA

>Gchil3173.t1 ID=Gchil3173.t1|Name=Gchil3173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00004382_pilon:611605..612204+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCGGTATGTGCTCAGCCTGTGCCTTGAGGAATGTGACACCGAA
AGGTGACTTCAAGAACTGTAAATCCATCTACAACTTGGATTCCGCACAGT
GCAAATCAAAGCTCCAGGAATATGCTCAGAAGAACCAGTGCGACACGAAA
AGGAAATCGCAGGTCAACGAGTGGTCTGCCGCCTCCAAGCAGAAGCTCGA
TTACTTCGTGTACGCTGTTTGTGAGCAATGCTGTGATTGCATTCCCAAGG
GTGCCACCGCTGCACAATACGGCTCTCGTAAGAATCAGAAGAAACTTTTC
CATCCTGAGCGTGGAAACTGCCCTGCACATGCGTTCTATGACATTTGCAA
GGTTCTGCCAAACATCAAGTACATGGCCTTGGGCAACGCTCCGTTCAAGG
GCGGCTGGGGTCACGCATGCGGCCATCTCAGGAAGTGGTTCAATTCACCG
GCCGCTACTAACTGGCTCAGCAATCACAATGCGAAGATGATTTTCAACAT
CAAGCAATTTTTGGGCAACGTCAACGTCGCCAACCAATGTGGTTCCAAGG
CCGTGTGGACTCGTTGTGTGGACATGGAAAAGAAGCAGAGACGTATTTAA
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protein sequence of Gchil3173.t1

>Gchil3173.t1 ID=Gchil3173.t1|Name=Gchil3173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=200bp
MPAGMCSACALRNVTPKGDFKNCKSIYNLDSAQCKSKLQEYAQKNQCDTK
RKSQVNEWSAASKQKLDYFVYAVCEQCCDCIPKGATAAQYGSRKNQKKLF
HPERGNCPAHAFYDICKVLPNIKYMALGNAPFKGGWGHACGHLRKWFNSP
AATNWLSNHNAKMIFNIKQFLGNVNVANQCGSKAVWTRCVDMEKKQRRI*
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mRNA from alignment at tig00004382_pilon:611605..612204+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3173.t1 ID=Gchil3173.t1|Name=Gchil3173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00004382_pilon:611605..612204+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGCCGGTATGTGCTCAGCCTGTGCCTTGAGGAATGTGACACCGAA
AGGTGACTTCAAGAACTGTAAATCCATCTACAACTTGGATTCCGCACAGT
GCAAATCAAAGCTCCAGGAATATGCTCAGAAGAACCAGTGCGACACGAAA
AGGAAATCGCAGGTCAACGAGTGGTCTGCCGCCTCCAAGCAGAAGCTCGA
TTACTTCGTGTACGCTGTTTGTGAGCAATGCTGTGATTGCATTCCCAAGG
GTGCCACCGCTGCACAATACGGCTCTCGTAAGAATCAGAAGAAACTTTTC
CATCCTGAGCGTGGAAACTGCCCTGCACATGCGTTCTATGACATTTGCAA
GGTTCTGCCAAACATCAAGTACATGGCCTTGGGCAACGCTCCGTTCAAGG
GCGGCTGGGGTCACGCATGCGGCCATCTCAGGAAGTGGTTCAATTCACCG
GCCGCTACTAACTGGCTCAGCAATCACAATGCGAAGATGATTTTCAACAT
CAAGCAATTTTTGGGCAACGTCAACGTCGCCAACCAATGTGGTTCCAAGG
CCGTGTGGACTCGTTGTGTGGACATGGAAAAGAAGCAGAGACGTATTTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:611605..612204+

>Gchil3173.t1 ID=Gchil3173.t1|Name=Gchil3173.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00004382_pilon:611605..612204+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGCCGGTATGTGCTCAGCCTGTGCCTTGAGGAATGTGACACCGAA
AGGTGACTTCAAGAACTGTAAATCCATCTACAACTTGGATTCCGCACAGT
GCAAATCAAAGCTCCAGGAATATGCTCAGAAGAACCAGTGCGACACGAAA
AGGAAATCGCAGGTCAACGAGTGGTCTGCCGCCTCCAAGCAGAAGCTCGA
TTACTTCGTGTACGCTGTTTGTGAGCAATGCTGTGATTGCATTCCCAAGG
GTGCCACCGCTGCACAATACGGCTCTCGTAAGAATCAGAAGAAACTTTTC
CATCCTGAGCGTGGAAACTGCCCTGCACATGCGTTCTATGACATTTGCAA
GGTTCTGCCAAACATCAAGTACATGGCCTTGGGCAACGCTCCGTTCAAGG
GCGGCTGGGGTCACGCATGCGGCCATCTCAGGAAGTGGTTCAATTCACCG
GCCGCTACTAACTGGCTCAGCAATCACAATGCGAAGATGATTTTCAACAT
CAAGCAATTTTTGGGCAACGTCAACGTCGCCAACCAATGTGGTTCCAAGG
CCGTGTGGACTCGTTGTGTGGACATGGAAAAGAAGCAGAGACGTATTTAA
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