Gchil3167.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3167.t1
Unique NameGchil3167.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:600730..602253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702604.1
Preferred nameABCH2
PFAMsAAA_assoc_C,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K02003
KEGG TC3.A.1
KEGG ModuleM00258
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008144,GO:0008150,GO:0009653,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0030587,GO:0031224,GO:0031288,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue4.84e-172
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3167Gchil3167Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 600730..602253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3167.t1.stop1Gchil3167.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 600730..600732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3167.t1.CDS1Gchil3167.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 600730..602253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3167.t1.exon1Gchil3167.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 600730..602253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3167.t1.start1Gchil3167.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 602251..602253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3167.t1Gchil3167.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 600730..602253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3167.t1 ID=Gchil3167.t1|Name=Gchil3167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MTTNSPRVDTSAPPVMPAAPPSRSVISSLKHVSYDVSGVRVVEDVSLDIS
EGEIVCILGPSGSGKSTILRILAGLTRPSEGVALYKGRPFQGPNPGASIV
FQTFALYPWLTVLENVELGLSNASGVSREDIRAVSMRAIDIIGLDGYENA
YPRELSGGMRQRVGFARALAVEPEILCMDEPFSALDVLTAENLRSEVLRL
WQAGDVPTTSVLIVTHGIEEAVSLADRVVILGKDPGHVRNILPINLSHPR
DRKSAVFQEITDLVYTILSEKDYVVSQEDFAVLTRGGYSRYPSDKHILMS
PQSIVNPQSESQPADTIESAHHVQPQGFDHSEDIVRRDEPVPRYPQLPAV
RIGSVTGLLSFIAGDSEDLYRLGQRLQLDVDDLYPLIDAASILGFIEVDE
GDVRMNSTGHLFLRASIDERKHMIRTAALSASEARLVAQIHCLLSQSAKQ
ELPEDLIFDTILLKHFSPAKARKQLDIAIEWGRYAELFGYESLTGALFLD
RGDEVRE*
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spliced messenger RNA

>Gchil3167.t1 ID=Gchil3167.t1|Name=Gchil3167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00004382_pilon:600730..602253- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACAAACAGTCCCCGTGTCGACACCAGCGCCCCCCCTGTGATGCC
AGCTGCTCCTCCTTCGCGCTCCGTCATTTCGTCGCTCAAGCATGTTTCCT
ATGATGTGAGTGGTGTGCGCGTTGTGGAGGACGTAAGTTTGGATATTTCA
GAAGGAGAAATCGTCTGCATTCTCGGTCCGTCTGGTTCTGGAAAGTCGAC
CATTTTGAGGATTTTGGCTGGTCTCACTCGTCCCTCTGAAGGAGTTGCCC
TTTATAAAGGACGCCCTTTTCAAGGTCCTAATCCAGGCGCTTCCATTGTG
TTCCAGACATTTGCCCTCTACCCATGGCTCACCGTTCTGGAGAATGTAGA
ACTTGGGCTCTCCAATGCATCTGGTGTTAGTCGCGAGGATATCCGAGCGG
TTTCCATGAGGGCCATTGATATCATCGGTCTAGACGGATATGAAAATGCG
TACCCACGTGAGCTTTCAGGTGGAATGCGACAGCGTGTCGGTTTTGCGAG
GGCTCTCGCCGTCGAACCGGAGATTCTTTGCATGGACGAGCCTTTCTCGG
CGTTAGATGTTCTCACAGCTGAGAATTTGCGTTCAGAAGTTTTGCGATTG
TGGCAGGCGGGAGATGTACCAACCACATCGGTTCTAATTGTCACTCATGG
AATTGAGGAGGCCGTTAGTCTGGCCGATAGAGTGGTTATCCTGGGCAAAG
ATCCCGGACACGTACGTAACATTTTGCCTATCAATCTTTCTCATCCGCGT
GATCGAAAGAGTGCAGTCTTTCAAGAGATCACCGATCTTGTTTACACCAT
TCTCTCTGAAAAAGATTATGTTGTCTCTCAAGAAGATTTTGCTGTTCTTA
CTCGTGGGGGTTATTCCCGATATCCATCCGACAAGCACATTTTGATGAGT
CCGCAAAGCATTGTCAACCCGCAATCTGAGTCACAGCCAGCAGACACTAT
CGAATCTGCACACCACGTTCAACCACAAGGATTTGACCATAGTGAGGACA
TTGTCCGTAGAGACGAGCCGGTTCCGCGTTACCCGCAATTACCAGCTGTG
CGGATTGGAAGCGTCACAGGACTTCTGTCCTTTATTGCAGGAGACAGCGA
AGACCTTTACCGATTAGGACAAAGGCTTCAACTTGACGTTGATGACCTCT
ACCCTCTGATTGACGCAGCCAGCATTCTGGGCTTCATTGAGGTCGATGAA
GGTGACGTTCGCATGAACTCTACGGGTCATCTTTTTCTTCGAGCATCCAT
CGACGAGCGCAAGCACATGATTCGTACGGCTGCGCTTTCCGCGTCTGAAG
CACGTTTAGTGGCACAGATACACTGTCTGCTTTCGCAATCCGCCAAACAA
GAACTACCCGAAGACCTGATCTTCGATACTATTCTTTTGAAACACTTTTC
GCCAGCGAAGGCGAGAAAGCAGCTCGACATAGCGATTGAATGGGGGCGTT
ACGCGGAATTGTTTGGATATGAATCTTTGACAGGAGCCCTCTTCCTCGAC
AGAGGGGATGAAGTGCGTGAATGA
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protein sequence of Gchil3167.t1

>Gchil3167.t1 ID=Gchil3167.t1|Name=Gchil3167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MTTNSPRVDTSAPPVMPAAPPSRSVISSLKHVSYDVSGVRVVEDVSLDIS
EGEIVCILGPSGSGKSTILRILAGLTRPSEGVALYKGRPFQGPNPGASIV
FQTFALYPWLTVLENVELGLSNASGVSREDIRAVSMRAIDIIGLDGYENA
YPRELSGGMRQRVGFARALAVEPEILCMDEPFSALDVLTAENLRSEVLRL
WQAGDVPTTSVLIVTHGIEEAVSLADRVVILGKDPGHVRNILPINLSHPR
DRKSAVFQEITDLVYTILSEKDYVVSQEDFAVLTRGGYSRYPSDKHILMS
PQSIVNPQSESQPADTIESAHHVQPQGFDHSEDIVRRDEPVPRYPQLPAV
RIGSVTGLLSFIAGDSEDLYRLGQRLQLDVDDLYPLIDAASILGFIEVDE
GDVRMNSTGHLFLRASIDERKHMIRTAALSASEARLVAQIHCLLSQSAKQ
ELPEDLIFDTILLKHFSPAKARKQLDIAIEWGRYAELFGYESLTGALFLD
RGDEVRE*
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mRNA from alignment at tig00004382_pilon:600730..602253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3167.t1 ID=Gchil3167.t1|Name=Gchil3167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00004382_pilon:600730..602253- (Gracilaria chilensis NLEC103_M9 male)
ATGACTACAAACAGTCCCCGTGTCGACACCAGCGCCCCCCCTGTGATGCC
AGCTGCTCCTCCTTCGCGCTCCGTCATTTCGTCGCTCAAGCATGTTTCCT
ATGATGTGAGTGGTGTGCGCGTTGTGGAGGACGTAAGTTTGGATATTTCA
GAAGGAGAAATCGTCTGCATTCTCGGTCCGTCTGGTTCTGGAAAGTCGAC
CATTTTGAGGATTTTGGCTGGTCTCACTCGTCCCTCTGAAGGAGTTGCCC
TTTATAAAGGACGCCCTTTTCAAGGTCCTAATCCAGGCGCTTCCATTGTG
TTCCAGACATTTGCCCTCTACCCATGGCTCACCGTTCTGGAGAATGTAGA
ACTTGGGCTCTCCAATGCATCTGGTGTTAGTCGCGAGGATATCCGAGCGG
TTTCCATGAGGGCCATTGATATCATCGGTCTAGACGGATATGAAAATGCG
TACCCACGTGAGCTTTCAGGTGGAATGCGACAGCGTGTCGGTTTTGCGAG
GGCTCTCGCCGTCGAACCGGAGATTCTTTGCATGGACGAGCCTTTCTCGG
CGTTAGATGTTCTCACAGCTGAGAATTTGCGTTCAGAAGTTTTGCGATTG
TGGCAGGCGGGAGATGTACCAACCACATCGGTTCTAATTGTCACTCATGG
AATTGAGGAGGCCGTTAGTCTGGCCGATAGAGTGGTTATCCTGGGCAAAG
ATCCCGGACACGTACGTAACATTTTGCCTATCAATCTTTCTCATCCGCGT
GATCGAAAGAGTGCAGTCTTTCAAGAGATCACCGATCTTGTTTACACCAT
TCTCTCTGAAAAAGATTATGTTGTCTCTCAAGAAGATTTTGCTGTTCTTA
CTCGTGGGGGTTATTCCCGATATCCATCCGACAAGCACATTTTGATGAGT
CCGCAAAGCATTGTCAACCCGCAATCTGAGTCACAGCCAGCAGACACTAT
CGAATCTGCACACCACGTTCAACCACAAGGATTTGACCATAGTGAGGACA
TTGTCCGTAGAGACGAGCCGGTTCCGCGTTACCCGCAATTACCAGCTGTG
CGGATTGGAAGCGTCACAGGACTTCTGTCCTTTATTGCAGGAGACAGCGA
AGACCTTTACCGATTAGGACAAAGGCTTCAACTTGACGTTGATGACCTCT
ACCCTCTGATTGACGCAGCCAGCATTCTGGGCTTCATTGAGGTCGATGAA
GGTGACGTTCGCATGAACTCTACGGGTCATCTTTTTCTTCGAGCATCCAT
CGACGAGCGCAAGCACATGATTCGTACGGCTGCGCTTTCCGCGTCTGAAG
CACGTTTAGTGGCACAGATACACTGTCTGCTTTCGCAATCCGCCAAACAA
GAACTACCCGAAGACCTGATCTTCGATACTATTCTTTTGAAACACTTTTC
GCCAGCGAAGGCGAGAAAGCAGCTCGACATAGCGATTGAATGGGGGCGTT
ACGCGGAATTGTTTGGATATGAATCTTTGACAGGAGCCCTCTTCCTCGAC
AGAGGGGATGAAGTGCGTGAATGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:600730..602253-

>Gchil3167.t1 ID=Gchil3167.t1|Name=Gchil3167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00004382_pilon:600730..602253- (Gracilaria chilensis NLEC103_M9 male)
ATGACTACAAACAGTCCCCGTGTCGACACCAGCGCCCCCCCTGTGATGCC
AGCTGCTCCTCCTTCGCGCTCCGTCATTTCGTCGCTCAAGCATGTTTCCT
ATGATGTGAGTGGTGTGCGCGTTGTGGAGGACGTAAGTTTGGATATTTCA
GAAGGAGAAATCGTCTGCATTCTCGGTCCGTCTGGTTCTGGAAAGTCGAC
CATTTTGAGGATTTTGGCTGGTCTCACTCGTCCCTCTGAAGGAGTTGCCC
TTTATAAAGGACGCCCTTTTCAAGGTCCTAATCCAGGCGCTTCCATTGTG
TTCCAGACATTTGCCCTCTACCCATGGCTCACCGTTCTGGAGAATGTAGA
ACTTGGGCTCTCCAATGCATCTGGTGTTAGTCGCGAGGATATCCGAGCGG
TTTCCATGAGGGCCATTGATATCATCGGTCTAGACGGATATGAAAATGCG
TACCCACGTGAGCTTTCAGGTGGAATGCGACAGCGTGTCGGTTTTGCGAG
GGCTCTCGCCGTCGAACCGGAGATTCTTTGCATGGACGAGCCTTTCTCGG
CGTTAGATGTTCTCACAGCTGAGAATTTGCGTTCAGAAGTTTTGCGATTG
TGGCAGGCGGGAGATGTACCAACCACATCGGTTCTAATTGTCACTCATGG
AATTGAGGAGGCCGTTAGTCTGGCCGATAGAGTGGTTATCCTGGGCAAAG
ATCCCGGACACGTACGTAACATTTTGCCTATCAATCTTTCTCATCCGCGT
GATCGAAAGAGTGCAGTCTTTCAAGAGATCACCGATCTTGTTTACACCAT
TCTCTCTGAAAAAGATTATGTTGTCTCTCAAGAAGATTTTGCTGTTCTTA
CTCGTGGGGGTTATTCCCGATATCCATCCGACAAGCACATTTTGATGAGT
CCGCAAAGCATTGTCAACCCGCAATCTGAGTCACAGCCAGCAGACACTAT
CGAATCTGCACACCACGTTCAACCACAAGGATTTGACCATAGTGAGGACA
TTGTCCGTAGAGACGAGCCGGTTCCGCGTTACCCGCAATTACCAGCTGTG
CGGATTGGAAGCGTCACAGGACTTCTGTCCTTTATTGCAGGAGACAGCGA
AGACCTTTACCGATTAGGACAAAGGCTTCAACTTGACGTTGATGACCTCT
ACCCTCTGATTGACGCAGCCAGCATTCTGGGCTTCATTGAGGTCGATGAA
GGTGACGTTCGCATGAACTCTACGGGTCATCTTTTTCTTCGAGCATCCAT
CGACGAGCGCAAGCACATGATTCGTACGGCTGCGCTTTCCGCGTCTGAAG
CACGTTTAGTGGCACAGATACACTGTCTGCTTTCGCAATCCGCCAAACAA
GAACTACCCGAAGACCTGATCTTCGATACTATTCTTTTGAAACACTTTTC
GCCAGCGAAGGCGAGAAAGCAGCTCGACATAGCGATTGAATGGGGGCGTT
ACGCGGAATTGTTTGGATATGAATCTTTGACAGGAGCCCTCTTCCTCGAC
AGAGGGGATGAAGTGCGTGAATGA
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