Gchil3164.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3164.t1
Unique NameGchil3164.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:593287..594092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002592201.1
Preferred nameRPL23
PFAMsRibosomal_L14
Max annot lvl33208|Metazoa
KEGG koko:K02894
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000122,GO:0000184,GO:0000956,GO:0001221,GO:0001223,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006606,GO:0006610,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010948,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017022,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022411,GO:0022625,GO:0022626,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032984,GO:0032986,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042175,GO:0042176,GO:0042177,GO:0042221,GO:0042886,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045786,GO:0045787,GO:0045861,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055105,GO:0055106,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070180,GO:0070727,GO:0070887,GO:0070972,GO:0071156,GO:0071157,GO:0071158,GO:0071236,GO:0071310,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0072716,GO:0072717,GO:0080090,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901796,GO:1901798,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1903508,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2001141
Evalue4.46e-82
EggNOG OGsCOG0093@1|root,KOG0901@2759|Eukaryota,39ZWX@33154|Opisthokonta,3BPE2@33208|Metazoa,3D69J@33213|Bilateria,4826S@7711|Chordata
Descriptionlarge ribosomal subunit rRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3164Gchil3164Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 593287..594092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3164.t1Gchil3164.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 593287..594092 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3164.t1.start1Gchil3164.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 593287..593289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3164.t1.CDS1Gchil3164.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 593287..593466 +
Gchil3164.t1.CDS2Gchil3164.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 593625..593742 +
Gchil3164.t1.CDS3Gchil3164.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 593968..594092 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3164.t1.exon1Gchil3164.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 593287..593466 +
Gchil3164.t1.exon2Gchil3164.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 593625..593742 +
Gchil3164.t1.exon3Gchil3164.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 593968..594092 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3164.t1.intron1Gchil3164.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 593467..593624 +
Gchil3164.t1.intron2Gchil3164.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 593743..593967 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3164.t1.stop1Gchil3164.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 594090..594092 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3164.t1 ID=Gchil3164.t1|Name=Gchil3164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=141bp
MSKRGRGGASGSKFRVALGLPVSAIMNCADNTGAKNLYVISVTKIKGRLN
RLPSASVGDMVLATVKKGKPELKKKVSPAVVIRQRKAWRRRDGTFLYFED
NAGVIVNVKGEMKGSAITGPVAKECADLWPRIASNAGTIV*
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spliced messenger RNA

>Gchil3164.t1 ID=Gchil3164.t1|Name=Gchil3164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00004382_pilon:593287..594092+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAAGCGTGGAAGAGGTGGCGCGAGCGGAAGCAAATTCCGTGTCGC
CCTTGGTCTTCCGGTCTCTGCAATCATGAATTGTGCCGACAACACTGGTG
CAAAGAACTTATACGTCATTTCAGTCACAAAGATCAAGGGCCGACTGAAT
CGACTTCCGTCTGCTAGTGTTGGCGACATGGTTCTCGCCACTGTGAAAAA
GGGTAAACCAGAGCTGAAGAAAAAGGTTTCTCCAGCTGTTGTGATTCGTC
AACGAAAAGCCTGGCGTCGTAGGGATGGTACCTTCCTCTACTTTGAAGAT
AACGCTGGCGTCATTGTTAATGTTAAAGGAGAAATGAAGGGGTCAGCGAT
CACTGGCCCTGTGGCGAAAGAATGTGCTGATCTTTGGCCGCGTATAGCGT
CTAACGCTGGTACTATTGTTTGA
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protein sequence of Gchil3164.t1

>Gchil3164.t1 ID=Gchil3164.t1|Name=Gchil3164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=141bp
MSKRGRGGASGSKFRVALGLPVSAIMNCADNTGAKNLYVISVTKIKGRLN
RLPSASVGDMVLATVKKGKPELKKKVSPAVVIRQRKAWRRRDGTFLYFED
NAGVIVNVKGEMKGSAITGPVAKECADLWPRIASNAGTIV*
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mRNA from alignment at tig00004382_pilon:593287..594092+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3164.t1 ID=Gchil3164.t1|Name=Gchil3164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=806bp|location=Sequence derived from alignment at tig00004382_pilon:593287..594092+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAAGCGTGGAAGAGGTGGCGCGAGCGGAAGCAAATTCCGTGTCGC
CCTTGGTCTTCCGGTCTCTGCAATCATGAATTGTGCCGACAACACTGGTG
CAAAGAACTTATACGTCATTTCAGTCACAAAGATCAAGGGCCGACTGAAT
CGACTTCCGTCTGCTAGTGTTGGCGACATGGTAAGCGCTTTCATTCCTCT
TTGGAGCATTGATCGGCCCGGATGCGATTCGTGTCAGGTGCGATGCCTAT
GGGATACGATCGCACTCTCAGCCACTGCCTCACAGCAGGAGCATCGGCTT
CTTCCCAGTTTCTAATATTATTGCGTCTGTTTTTGTAGGTTCTCGCCACT
GTGAAAAAGGGTAAACCAGAGCTGAAGAAAAAGGTTTCTCCAGCTGTTGT
GATTCGTCAACGAAAAGCCTGGCGTCGTAGGGATGGTACCTTCCTCTACT
TTGAAGGTAAGATTCATCACTTCTTTGACATCGAAATAGAAACCCCGTCT
CGTCCCACCCTGCGCGATGTCATGATGCATAATCAAGAAGCGCTGATCTT
CCGTGAAGCTGCTTCCTATCAACCATCTTTCGGGGCTGAACCATAGCACA
TGAGCGGTCGAACGGTATTGTCCTTGACAGGCGACAGTCTCTGACCTCTT
TCTTGTCTGATTACTATTTCGACTGCTTTAGATAACGCTGGCGTCATTGT
TAATGTTAAAGGAGAAATGAAGGGGTCAGCGATCACTGGCCCTGTGGCGA
AAGAATGTGCTGATCTTTGGCCGCGTATAGCGTCTAACGCTGGTACTATT
GTTTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:593287..594092+

>Gchil3164.t1 ID=Gchil3164.t1|Name=Gchil3164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00004382_pilon:593287..594092+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAAGCGTGGAAGAGGTGGCGCGAGCGGAAGCAAATTCCGTGTCGC
CCTTGGTCTTCCGGTCTCTGCAATCATGAATTGTGCCGACAACACTGGTG
CAAAGAACTTATACGTCATTTCAGTCACAAAGATCAAGGGCCGACTGAAT
CGACTTCCGTCTGCTAGTGTTGGCGACATGGTTCTCGCCACTGTGAAAAA
GGGTAAACCAGAGCTGAAGAAAAAGGTTTCTCCAGCTGTTGTGATTCGTC
AACGAAAAGCCTGGCGTCGTAGGGATGGTACCTTCCTCTACTTTGAAGAT
AACGCTGGCGTCATTGTTAATGTTAAAGGAGAAATGAAGGGGTCAGCGAT
CACTGGCCCTGTGGCGAAAGAATGTGCTGATCTTTGGCCGCGTATAGCGT
CTAACGCTGGTACTATTGTTTGA
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