Gchil3161.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3161.t1
Unique Name	Gchil3161.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	523

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:586680..588248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8496.XP_006267488.1
Preferred name	ATXN10
PFAMs	Atx10homo_assoc
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19323
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030425,GO:0031175,GO:0032501,GO:0032502,GO:0036477,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048471,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051259,GO:0051260,GO:0060271,GO:0065003,GO:0070206,GO:0070207,GO:0070925,GO:0071840,GO:0071944,GO:0097447,GO:0097458,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Evalue	2.39e-12
EggNOG OGs	KOG2676@1\|root,KOG2676@2759\|Eukaryota,39FKY@33154\|Opisthokonta,3BCX6@33208\|Metazoa,3D18Y@33213\|Bilateria,47Z1E@7711\|Chordata,49757@7742\|Vertebrata
Description	protein homotrimerization
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3161	Gchil3161	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 586680..588248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3161.t1.start1	Gchil3161.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 586680..586682 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3161.t1.CDS1	Gchil3161.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 586680..588248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3161.t1.exon1	Gchil3161.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 586680..588248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3161.t1.stop1	Gchil3161.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 588246..588248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3161.t1	Gchil3161.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 586680..588248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:586680..588248+
coding sequence from alignment at tig00004382_pilon:586680..588248+

mRNA sequence

>Gchil3161.t1 ID=Gchil3161.t1|Name=Gchil3161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=523bp
MSTSQPLDFDTAVSQLCSKEWAPSGTHVATRHSDNVLRALLPASRTDKGR
VDLGASPNAIEHLVCVLRDPLAFHERLGELAVRLLRNLCARSPSNQLRAA
HCGAQDLVLQCIETRFQIAAERLSGGDPLAMRRVLDTDQPPTQHSNMRLP
FFGFAVEFLVNFVTCNATNAEMVWKKAFPSLIEKLLECENHAAAAAAAAL
VHNCIAVVPHRMADIVKIWESEEGSGKSFTEALVRQLQKEADSNDEEERF
SWSFMIIRRLIGASLLQHCFDALGPSLSDVASKPKSFSASQLVLLKVLDA
SVSKSAETAAESTLSGITIPSSSLLFFADLIEAAFLKREGDVLHIAASII
GSVVIITEDSDLLEQLRVRSVKVAVHVLQALSARQQAGANGTTEGQIPQF
TVNGVSSAVGLRGVMMRVVAICCDECKPAQDSVRKLMGIPVVLNALSYED
DVNKNPYLREWAVLAVRNLTCGNAANAKDISSYELMGLRNDKELLEKTGL
EAFMGEDGKPRLRVRKKAIAVE*

spliced messenger RNA

>Gchil3161.t1 ID=Gchil3161.t1|Name=Gchil3161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00004382_pilon:586680..588248+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACATCGCAGCCGCTCGACTTCGACACCGCCGTGTCTCAACTATG
CTCCAAGGAGTGGGCCCCGTCCGGCACGCATGTCGCCACACGTCACAGCG
ATAACGTACTGCGTGCCCTGCTTCCCGCCTCGCGCACTGACAAGGGCCGT
GTCGATTTGGGCGCTTCCCCCAATGCTATTGAGCACCTCGTGTGCGTTTT
GCGTGACCCGCTTGCCTTTCATGAGCGCCTCGGCGAGCTGGCCGTGAGGC
TGTTGCGAAACCTCTGTGCACGCTCCCCGTCGAATCAGTTGCGTGCCGCC
CATTGCGGTGCGCAGGACCTGGTCTTGCAGTGCATTGAGACCCGATTCCA
GATAGCTGCAGAGCGTCTATCTGGTGGTGATCCGCTTGCGATGAGACGTG
TCTTGGACACCGATCAACCCCCCACCCAGCACTCTAACATGAGGTTGCCG
TTTTTCGGCTTTGCTGTCGAGTTCTTGGTCAACTTTGTCACTTGCAATGC
GACCAATGCCGAGATGGTTTGGAAGAAGGCCTTCCCGTCCTTGATAGAAA
AGCTACTCGAGTGTGAAAACCACGCCGCTGCAGCTGCAGCCGCCGCGCTC
GTACACAACTGCATAGCTGTTGTGCCGCATCGCATGGCCGATATTGTCAA
AATTTGGGAGAGTGAGGAAGGTTCAGGCAAATCGTTTACCGAGGCGCTGG
TGCGTCAGCTTCAGAAAGAAGCTGATAGCAACGACGAAGAAGAACGTTTT
TCGTGGTCTTTCATGATCATCAGACGCCTTATCGGCGCGTCTTTGCTACA
ACACTGCTTCGATGCGTTGGGACCATCACTTTCCGACGTGGCTTCCAAGC
CCAAGTCGTTCTCAGCCAGCCAGCTTGTCTTGCTTAAGGTGCTGGACGCT
TCTGTCAGCAAATCTGCGGAGACTGCAGCCGAATCGACGTTATCCGGAAT
CACGATTCCTTCCAGCAGTCTACTCTTCTTCGCGGATCTCATTGAGGCCG
CTTTTCTAAAGAGGGAGGGCGATGTGCTGCATATTGCGGCGAGCATAATT
GGTTCGGTGGTGATCATAACGGAGGATTCCGATCTGTTGGAGCAACTGCG
CGTGCGTTCGGTCAAGGTCGCTGTTCACGTCTTGCAAGCGCTTTCGGCTC
GGCAGCAGGCTGGTGCAAACGGTACGACCGAGGGACAAATACCCCAGTTC
ACAGTAAATGGAGTATCATCCGCTGTCGGGTTGAGAGGTGTCATGATGCG
CGTTGTGGCCATATGTTGTGACGAATGCAAACCGGCTCAAGACTCGGTGC
GAAAGCTGATGGGTATTCCTGTTGTGCTCAACGCATTGTCGTACGAAGAC
GATGTTAACAAGAATCCGTACTTGCGTGAGTGGGCCGTTCTCGCGGTGCG
GAATTTGACGTGTGGAAACGCTGCCAATGCAAAAGACATCTCCAGTTATG
AACTTATGGGACTGCGCAACGACAAAGAACTGCTTGAAAAGACTGGATTG
GAGGCATTCATGGGGGAAGACGGGAAGCCAAGATTACGAGTGCGAAAAAA
GGCTATTGCAGTGGAGTAA

protein sequence of Gchil3161.t1

>Gchil3161.t1 ID=Gchil3161.t1|Name=Gchil3161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=523bp
MSTSQPLDFDTAVSQLCSKEWAPSGTHVATRHSDNVLRALLPASRTDKGR
VDLGASPNAIEHLVCVLRDPLAFHERLGELAVRLLRNLCARSPSNQLRAA
HCGAQDLVLQCIETRFQIAAERLSGGDPLAMRRVLDTDQPPTQHSNMRLP
FFGFAVEFLVNFVTCNATNAEMVWKKAFPSLIEKLLECENHAAAAAAAAL
VHNCIAVVPHRMADIVKIWESEEGSGKSFTEALVRQLQKEADSNDEEERF
SWSFMIIRRLIGASLLQHCFDALGPSLSDVASKPKSFSASQLVLLKVLDA
SVSKSAETAAESTLSGITIPSSSLLFFADLIEAAFLKREGDVLHIAASII
GSVVIITEDSDLLEQLRVRSVKVAVHVLQALSARQQAGANGTTEGQIPQF
TVNGVSSAVGLRGVMMRVVAICCDECKPAQDSVRKLMGIPVVLNALSYED
DVNKNPYLREWAVLAVRNLTCGNAANAKDISSYELMGLRNDKELLEKTGL
EAFMGEDGKPRLRVRKKAIAVE*

mRNA from alignment at tig00004382_pilon:586680..588248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3161.t1 ID=Gchil3161.t1|Name=Gchil3161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00004382_pilon:586680..588248+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACATCGCAGCCGCTCGACTTCGACACCGCCGTGTCTCAACTATG
CTCCAAGGAGTGGGCCCCGTCCGGCACGCATGTCGCCACACGTCACAGCG
ATAACGTACTGCGTGCCCTGCTTCCCGCCTCGCGCACTGACAAGGGCCGT
GTCGATTTGGGCGCTTCCCCCAATGCTATTGAGCACCTCGTGTGCGTTTT
GCGTGACCCGCTTGCCTTTCATGAGCGCCTCGGCGAGCTGGCCGTGAGGC
TGTTGCGAAACCTCTGTGCACGCTCCCCGTCGAATCAGTTGCGTGCCGCC
CATTGCGGTGCGCAGGACCTGGTCTTGCAGTGCATTGAGACCCGATTCCA
GATAGCTGCAGAGCGTCTATCTGGTGGTGATCCGCTTGCGATGAGACGTG
TCTTGGACACCGATCAACCCCCCACCCAGCACTCTAACATGAGGTTGCCG
TTTTTCGGCTTTGCTGTCGAGTTCTTGGTCAACTTTGTCACTTGCAATGC
GACCAATGCCGAGATGGTTTGGAAGAAGGCCTTCCCGTCCTTGATAGAAA
AGCTACTCGAGTGTGAAAACCACGCCGCTGCAGCTGCAGCCGCCGCGCTC
GTACACAACTGCATAGCTGTTGTGCCGCATCGCATGGCCGATATTGTCAA
AATTTGGGAGAGTGAGGAAGGTTCAGGCAAATCGTTTACCGAGGCGCTGG
TGCGTCAGCTTCAGAAAGAAGCTGATAGCAACGACGAAGAAGAACGTTTT
TCGTGGTCTTTCATGATCATCAGACGCCTTATCGGCGCGTCTTTGCTACA
ACACTGCTTCGATGCGTTGGGACCATCACTTTCCGACGTGGCTTCCAAGC
CCAAGTCGTTCTCAGCCAGCCAGCTTGTCTTGCTTAAGGTGCTGGACGCT
TCTGTCAGCAAATCTGCGGAGACTGCAGCCGAATCGACGTTATCCGGAAT
CACGATTCCTTCCAGCAGTCTACTCTTCTTCGCGGATCTCATTGAGGCCG
CTTTTCTAAAGAGGGAGGGCGATGTGCTGCATATTGCGGCGAGCATAATT
GGTTCGGTGGTGATCATAACGGAGGATTCCGATCTGTTGGAGCAACTGCG
CGTGCGTTCGGTCAAGGTCGCTGTTCACGTCTTGCAAGCGCTTTCGGCTC
GGCAGCAGGCTGGTGCAAACGGTACGACCGAGGGACAAATACCCCAGTTC
ACAGTAAATGGAGTATCATCCGCTGTCGGGTTGAGAGGTGTCATGATGCG
CGTTGTGGCCATATGTTGTGACGAATGCAAACCGGCTCAAGACTCGGTGC
GAAAGCTGATGGGTATTCCTGTTGTGCTCAACGCATTGTCGTACGAAGAC
GATGTTAACAAGAATCCGTACTTGCGTGAGTGGGCCGTTCTCGCGGTGCG
GAATTTGACGTGTGGAAACGCTGCCAATGCAAAAGACATCTCCAGTTATG
AACTTATGGGACTGCGCAACGACAAAGAACTGCTTGAAAAGACTGGATTG
GAGGCATTCATGGGGGAAGACGGGAAGCCAAGATTACGAGTGCGAAAAAA
GGCTATTGCAGTGGAGTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:586680..588248+

>Gchil3161.t1 ID=Gchil3161.t1|Name=Gchil3161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00004382_pilon:586680..588248+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACATCGCAGCCGCTCGACTTCGACACCGCCGTGTCTCAACTATG
CTCCAAGGAGTGGGCCCCGTCCGGCACGCATGTCGCCACACGTCACAGCG
ATAACGTACTGCGTGCCCTGCTTCCCGCCTCGCGCACTGACAAGGGCCGT
GTCGATTTGGGCGCTTCCCCCAATGCTATTGAGCACCTCGTGTGCGTTTT
GCGTGACCCGCTTGCCTTTCATGAGCGCCTCGGCGAGCTGGCCGTGAGGC
TGTTGCGAAACCTCTGTGCACGCTCCCCGTCGAATCAGTTGCGTGCCGCC
CATTGCGGTGCGCAGGACCTGGTCTTGCAGTGCATTGAGACCCGATTCCA
GATAGCTGCAGAGCGTCTATCTGGTGGTGATCCGCTTGCGATGAGACGTG
TCTTGGACACCGATCAACCCCCCACCCAGCACTCTAACATGAGGTTGCCG
TTTTTCGGCTTTGCTGTCGAGTTCTTGGTCAACTTTGTCACTTGCAATGC
GACCAATGCCGAGATGGTTTGGAAGAAGGCCTTCCCGTCCTTGATAGAAA
AGCTACTCGAGTGTGAAAACCACGCCGCTGCAGCTGCAGCCGCCGCGCTC
GTACACAACTGCATAGCTGTTGTGCCGCATCGCATGGCCGATATTGTCAA
AATTTGGGAGAGTGAGGAAGGTTCAGGCAAATCGTTTACCGAGGCGCTGG
TGCGTCAGCTTCAGAAAGAAGCTGATAGCAACGACGAAGAAGAACGTTTT
TCGTGGTCTTTCATGATCATCAGACGCCTTATCGGCGCGTCTTTGCTACA
ACACTGCTTCGATGCGTTGGGACCATCACTTTCCGACGTGGCTTCCAAGC
CCAAGTCGTTCTCAGCCAGCCAGCTTGTCTTGCTTAAGGTGCTGGACGCT
TCTGTCAGCAAATCTGCGGAGACTGCAGCCGAATCGACGTTATCCGGAAT
CACGATTCCTTCCAGCAGTCTACTCTTCTTCGCGGATCTCATTGAGGCCG
CTTTTCTAAAGAGGGAGGGCGATGTGCTGCATATTGCGGCGAGCATAATT
GGTTCGGTGGTGATCATAACGGAGGATTCCGATCTGTTGGAGCAACTGCG
CGTGCGTTCGGTCAAGGTCGCTGTTCACGTCTTGCAAGCGCTTTCGGCTC
GGCAGCAGGCTGGTGCAAACGGTACGACCGAGGGACAAATACCCCAGTTC
ACAGTAAATGGAGTATCATCCGCTGTCGGGTTGAGAGGTGTCATGATGCG
CGTTGTGGCCATATGTTGTGACGAATGCAAACCGGCTCAAGACTCGGTGC
GAAAGCTGATGGGTATTCCTGTTGTGCTCAACGCATTGTCGTACGAAGAC
GATGTTAACAAGAATCCGTACTTGCGTGAGTGGGCCGTTCTCGCGGTGCG
GAATTTGACGTGTGGAAACGCTGCCAATGCAAAAGACATCTCCAGTTATG
AACTTATGGGACTGCGCAACGACAAAGAACTGCTTGAAAAGACTGGATTG
GAGGCATTCATGGGGGAAGACGGGAAGCCAAGATTACGAGTGCGAAAAAA
GGCTATTGCAGTGGAGTAA