Gchil3159.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3159.t1
Unique Name	Gchil3159.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:579131..580954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2JKN2
Preferred name	IPI1
PFAMs	Ipi1_N
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14827
GOs	GO:0000027,GO:0000228,GO:0000463,GO:0000470,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006275,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010556,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030174,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0034708,GO:0035097,GO:0036388,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044786,GO:0046483,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097344,GO:1901360,GO:1901576,GO:1902299,GO:1902494,GO:1990234,GO:1990904,GO:2000112
Evalue	3.96e-09
EggNOG OGs	KOG2149@1\|root,KOG2149@2759\|Eukaryota,38JUN@33154\|Opisthokonta,3NZQK@4751\|Fungi,1GTNU@112252\|Fungi incertae sedis
Description	Rix1 complex component involved in 60S ribosome maturation
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3159	Gchil3159	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 579131..580954 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3159.t1.start1	Gchil3159.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 579131..579133 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3159.t1.CDS1	Gchil3159.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 579131..580954 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3159.t1.exon1	Gchil3159.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 579131..580954 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3159.t1.stop1	Gchil3159.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 580952..580954 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3159.t1	Gchil3159.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 579131..580954 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:579131..580954+
coding sequence from alignment at tig00004382_pilon:579131..580954+

mRNA sequence

>Gchil3159.t1 ID=Gchil3159.t1|Name=Gchil3159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=608bp
MPRAKKKAKAAASNQDFQKKKPKIGRQARPASFTNTTVRQKQVFLPDQSR
SQEQLTSTKTGLSFTDLLPRTRHHNANTRTAALNGLTNGLKLENAVAHDA
IVLSPAPAIHAAATAIADENAPTRTAARNLLINVWSFLDDVQPFRSIFST
ALLACLSHIRLDIRLDGARTLVALLETNRMAPEQLFADTANPLESLCDLL
AVTTGVKGRTAVLDALCSLCEHVPRSDGSERVPSHASPAASQQTATENTR
TPLPFYYHRSPLHVNEKHTGQLFTKFSTQLASNLIARVANLLTESFPLIE
TRRDKNKYTMFLSASQALFRLVTNCSPEANHKPVHRCLKLWSAEDGASQI
STADIHFAGTAIHLASFDACQDFLVSALNARSYPAGLELCVANYIESCDE
NLAVLESWCNRFEAAAHEENANILCRSLRICEVVLKRRSRNETIVWRLLK
CLPFAIQACAHGKGDAVDSETSVNVLIKLFSSSYRSLQALGSNAEQLQTT
MENLVDIVCAQRLALKLNHSEVDQIVGVLAAAKMITVDEVVSFIGFCFRE
GNLHLAERFLMGVEAAAVNENEEKYRAIALAKALKLVSSGLNSNLTAQLE
RIESVVC*

spliced messenger RNA

>Gchil3159.t1 ID=Gchil3159.t1|Name=Gchil3159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00004382_pilon:579131..580954+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGTGCCAAGAAGAAAGCAAAGGCCGCCGCGTCCAACCAAGACTT
TCAAAAGAAGAAGCCAAAAATCGGACGCCAAGCCCGACCCGCCAGTTTCA
CCAACACCACCGTGAGGCAAAAGCAAGTATTCTTGCCGGACCAGTCACGG
TCGCAAGAGCAACTTACATCAACAAAAACAGGGCTTTCGTTCACAGACCT
GCTCCCACGCACTCGGCACCACAATGCCAACACCAGAACAGCAGCGCTGA
ATGGGCTCACCAACGGGCTCAAGCTCGAGAATGCCGTCGCACACGACGCC
ATTGTTCTCTCCCCGGCCCCCGCAATACACGCAGCCGCAACTGCCATCGC
CGACGAGAATGCACCCACGAGAACGGCTGCGCGTAACTTGCTAATCAATG
TATGGAGTTTCTTGGATGACGTGCAACCGTTTCGTTCTATTTTCTCTACT
GCTTTATTGGCGTGTTTGAGTCACATTCGCCTGGACATTCGCCTGGATGG
AGCCCGAACGCTTGTCGCGCTGCTGGAGACGAATCGTATGGCCCCCGAAC
AATTGTTCGCTGACACTGCCAATCCTTTGGAATCCCTCTGTGACCTACTT
GCCGTCACAACGGGTGTGAAGGGAAGGACAGCAGTGTTGGATGCATTGTG
TTCCCTTTGCGAACACGTCCCGCGCTCTGATGGCTCTGAACGCGTTCCGT
CACATGCAAGCCCCGCTGCATCGCAACAAACGGCAACTGAGAACACGCGA
ACGCCCTTGCCCTTCTACTACCATCGTTCACCACTTCACGTAAATGAAAA
GCACACTGGGCAGCTTTTCACAAAGTTTTCTACGCAGCTCGCGTCCAACC
TGATCGCTCGCGTCGCCAACCTGCTCACTGAGTCCTTTCCGCTCATCGAG
ACCCGCAGGGACAAAAACAAGTACACCATGTTTCTGTCCGCATCGCAAGC
GTTGTTCCGACTGGTTACAAACTGTTCACCGGAAGCGAATCACAAGCCAG
TTCACAGATGCTTGAAACTATGGTCCGCAGAAGACGGCGCCAGCCAGATC
AGCACGGCGGACATCCATTTCGCGGGAACCGCAATTCATCTTGCAAGTTT
TGATGCATGTCAAGATTTTCTCGTATCAGCATTAAACGCAAGATCGTATC
CCGCAGGCTTGGAATTATGTGTTGCAAACTACATCGAGAGTTGCGATGAA
AACTTGGCGGTTTTAGAGTCTTGGTGCAACCGCTTTGAAGCAGCTGCCCA
CGAAGAAAACGCCAACATTCTGTGCAGATCGTTGAGAATTTGTGAAGTTG
TGTTAAAGCGACGGAGCAGAAACGAAACAATAGTGTGGCGACTCTTGAAA
TGTCTTCCATTTGCAATCCAAGCTTGTGCCCACGGAAAAGGAGACGCTGT
GGACAGTGAAACCTCCGTGAACGTATTAATCAAACTATTTTCCAGCTCTT
ACAGATCGCTTCAAGCTTTAGGGAGCAACGCAGAACAATTGCAGACCACA
ATGGAGAATCTCGTCGACATTGTTTGCGCTCAGCGCTTGGCCCTGAAGCT
GAATCACAGCGAAGTAGATCAAATCGTGGGCGTTCTTGCCGCGGCCAAAA
TGATTACCGTGGATGAAGTGGTGTCCTTCATTGGCTTTTGCTTCAGGGAA
GGGAATTTACATTTGGCGGAACGGTTTCTGATGGGAGTTGAAGCTGCAGC
CGTCAATGAAAATGAAGAAAAGTATCGAGCCATTGCCCTGGCAAAGGCGC
TCAAACTGGTCAGTTCTGGTTTGAACTCAAACTTAACGGCTCAGCTGGAA
AGAATCGAAAGCGTTGTCTGCTAG

protein sequence of Gchil3159.t1

>Gchil3159.t1 ID=Gchil3159.t1|Name=Gchil3159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=608bp
MPRAKKKAKAAASNQDFQKKKPKIGRQARPASFTNTTVRQKQVFLPDQSR
SQEQLTSTKTGLSFTDLLPRTRHHNANTRTAALNGLTNGLKLENAVAHDA
IVLSPAPAIHAAATAIADENAPTRTAARNLLINVWSFLDDVQPFRSIFST
ALLACLSHIRLDIRLDGARTLVALLETNRMAPEQLFADTANPLESLCDLL
AVTTGVKGRTAVLDALCSLCEHVPRSDGSERVPSHASPAASQQTATENTR
TPLPFYYHRSPLHVNEKHTGQLFTKFSTQLASNLIARVANLLTESFPLIE
TRRDKNKYTMFLSASQALFRLVTNCSPEANHKPVHRCLKLWSAEDGASQI
STADIHFAGTAIHLASFDACQDFLVSALNARSYPAGLELCVANYIESCDE
NLAVLESWCNRFEAAAHEENANILCRSLRICEVVLKRRSRNETIVWRLLK
CLPFAIQACAHGKGDAVDSETSVNVLIKLFSSSYRSLQALGSNAEQLQTT
MENLVDIVCAQRLALKLNHSEVDQIVGVLAAAKMITVDEVVSFIGFCFRE
GNLHLAERFLMGVEAAAVNENEEKYRAIALAKALKLVSSGLNSNLTAQLE
RIESVVC*

mRNA from alignment at tig00004382_pilon:579131..580954+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3159.t1 ID=Gchil3159.t1|Name=Gchil3159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00004382_pilon:579131..580954+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGTGCCAAGAAGAAAGCAAAGGCCGCCGCGTCCAACCAAGACTT
TCAAAAGAAGAAGCCAAAAATCGGACGCCAAGCCCGACCCGCCAGTTTCA
CCAACACCACCGTGAGGCAAAAGCAAGTATTCTTGCCGGACCAGTCACGG
TCGCAAGAGCAACTTACATCAACAAAAACAGGGCTTTCGTTCACAGACCT
GCTCCCACGCACTCGGCACCACAATGCCAACACCAGAACAGCAGCGCTGA
ATGGGCTCACCAACGGGCTCAAGCTCGAGAATGCCGTCGCACACGACGCC
ATTGTTCTCTCCCCGGCCCCCGCAATACACGCAGCCGCAACTGCCATCGC
CGACGAGAATGCACCCACGAGAACGGCTGCGCGTAACTTGCTAATCAATG
TATGGAGTTTCTTGGATGACGTGCAACCGTTTCGTTCTATTTTCTCTACT
GCTTTATTGGCGTGTTTGAGTCACATTCGCCTGGACATTCGCCTGGATGG
AGCCCGAACGCTTGTCGCGCTGCTGGAGACGAATCGTATGGCCCCCGAAC
AATTGTTCGCTGACACTGCCAATCCTTTGGAATCCCTCTGTGACCTACTT
GCCGTCACAACGGGTGTGAAGGGAAGGACAGCAGTGTTGGATGCATTGTG
TTCCCTTTGCGAACACGTCCCGCGCTCTGATGGCTCTGAACGCGTTCCGT
CACATGCAAGCCCCGCTGCATCGCAACAAACGGCAACTGAGAACACGCGA
ACGCCCTTGCCCTTCTACTACCATCGTTCACCACTTCACGTAAATGAAAA
GCACACTGGGCAGCTTTTCACAAAGTTTTCTACGCAGCTCGCGTCCAACC
TGATCGCTCGCGTCGCCAACCTGCTCACTGAGTCCTTTCCGCTCATCGAG
ACCCGCAGGGACAAAAACAAGTACACCATGTTTCTGTCCGCATCGCAAGC
GTTGTTCCGACTGGTTACAAACTGTTCACCGGAAGCGAATCACAAGCCAG
TTCACAGATGCTTGAAACTATGGTCCGCAGAAGACGGCGCCAGCCAGATC
AGCACGGCGGACATCCATTTCGCGGGAACCGCAATTCATCTTGCAAGTTT
TGATGCATGTCAAGATTTTCTCGTATCAGCATTAAACGCAAGATCGTATC
CCGCAGGCTTGGAATTATGTGTTGCAAACTACATCGAGAGTTGCGATGAA
AACTTGGCGGTTTTAGAGTCTTGGTGCAACCGCTTTGAAGCAGCTGCCCA
CGAAGAAAACGCCAACATTCTGTGCAGATCGTTGAGAATTTGTGAAGTTG
TGTTAAAGCGACGGAGCAGAAACGAAACAATAGTGTGGCGACTCTTGAAA
TGTCTTCCATTTGCAATCCAAGCTTGTGCCCACGGAAAAGGAGACGCTGT
GGACAGTGAAACCTCCGTGAACGTATTAATCAAACTATTTTCCAGCTCTT
ACAGATCGCTTCAAGCTTTAGGGAGCAACGCAGAACAATTGCAGACCACA
ATGGAGAATCTCGTCGACATTGTTTGCGCTCAGCGCTTGGCCCTGAAGCT
GAATCACAGCGAAGTAGATCAAATCGTGGGCGTTCTTGCCGCGGCCAAAA
TGATTACCGTGGATGAAGTGGTGTCCTTCATTGGCTTTTGCTTCAGGGAA
GGGAATTTACATTTGGCGGAACGGTTTCTGATGGGAGTTGAAGCTGCAGC
CGTCAATGAAAATGAAGAAAAGTATCGAGCCATTGCCCTGGCAAAGGCGC
TCAAACTGGTCAGTTCTGGTTTGAACTCAAACTTAACGGCTCAGCTGGAA
AGAATCGAAAGCGTTGTCTGCTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:579131..580954+

>Gchil3159.t1 ID=Gchil3159.t1|Name=Gchil3159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1824bp|location=Sequence derived from alignment at tig00004382_pilon:579131..580954+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGTGCCAAGAAGAAAGCAAAGGCCGCCGCGTCCAACCAAGACTT
TCAAAAGAAGAAGCCAAAAATCGGACGCCAAGCCCGACCCGCCAGTTTCA
CCAACACCACCGTGAGGCAAAAGCAAGTATTCTTGCCGGACCAGTCACGG
TCGCAAGAGCAACTTACATCAACAAAAACAGGGCTTTCGTTCACAGACCT
GCTCCCACGCACTCGGCACCACAATGCCAACACCAGAACAGCAGCGCTGA
ATGGGCTCACCAACGGGCTCAAGCTCGAGAATGCCGTCGCACACGACGCC
ATTGTTCTCTCCCCGGCCCCCGCAATACACGCAGCCGCAACTGCCATCGC
CGACGAGAATGCACCCACGAGAACGGCTGCGCGTAACTTGCTAATCAATG
TATGGAGTTTCTTGGATGACGTGCAACCGTTTCGTTCTATTTTCTCTACT
GCTTTATTGGCGTGTTTGAGTCACATTCGCCTGGACATTCGCCTGGATGG
AGCCCGAACGCTTGTCGCGCTGCTGGAGACGAATCGTATGGCCCCCGAAC
AATTGTTCGCTGACACTGCCAATCCTTTGGAATCCCTCTGTGACCTACTT
GCCGTCACAACGGGTGTGAAGGGAAGGACAGCAGTGTTGGATGCATTGTG
TTCCCTTTGCGAACACGTCCCGCGCTCTGATGGCTCTGAACGCGTTCCGT
CACATGCAAGCCCCGCTGCATCGCAACAAACGGCAACTGAGAACACGCGA
ACGCCCTTGCCCTTCTACTACCATCGTTCACCACTTCACGTAAATGAAAA
GCACACTGGGCAGCTTTTCACAAAGTTTTCTACGCAGCTCGCGTCCAACC
TGATCGCTCGCGTCGCCAACCTGCTCACTGAGTCCTTTCCGCTCATCGAG
ACCCGCAGGGACAAAAACAAGTACACCATGTTTCTGTCCGCATCGCAAGC
GTTGTTCCGACTGGTTACAAACTGTTCACCGGAAGCGAATCACAAGCCAG
TTCACAGATGCTTGAAACTATGGTCCGCAGAAGACGGCGCCAGCCAGATC
AGCACGGCGGACATCCATTTCGCGGGAACCGCAATTCATCTTGCAAGTTT
TGATGCATGTCAAGATTTTCTCGTATCAGCATTAAACGCAAGATCGTATC
CCGCAGGCTTGGAATTATGTGTTGCAAACTACATCGAGAGTTGCGATGAA
AACTTGGCGGTTTTAGAGTCTTGGTGCAACCGCTTTGAAGCAGCTGCCCA
CGAAGAAAACGCCAACATTCTGTGCAGATCGTTGAGAATTTGTGAAGTTG
TGTTAAAGCGACGGAGCAGAAACGAAACAATAGTGTGGCGACTCTTGAAA
TGTCTTCCATTTGCAATCCAAGCTTGTGCCCACGGAAAAGGAGACGCTGT
GGACAGTGAAACCTCCGTGAACGTATTAATCAAACTATTTTCCAGCTCTT
ACAGATCGCTTCAAGCTTTAGGGAGCAACGCAGAACAATTGCAGACCACA
ATGGAGAATCTCGTCGACATTGTTTGCGCTCAGCGCTTGGCCCTGAAGCT
GAATCACAGCGAAGTAGATCAAATCGTGGGCGTTCTTGCCGCGGCCAAAA
TGATTACCGTGGATGAAGTGGTGTCCTTCATTGGCTTTTGCTTCAGGGAA
GGGAATTTACATTTGGCGGAACGGTTTCTGATGGGAGTTGAAGCTGCAGC
CGTCAATGAAAATGAAGAAAAGTATCGAGCCATTGCCCTGGCAAAGGCGC
TCAAACTGGTCAGTTCTGGTTTGAACTCAAACTTAACGGCTCAGCTGGAA
AGAATCGAAAGCGTTGTCTGCTAG