Gchil3152.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3152.t1
Unique NameGchil3152.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:515868..517515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000011469
Preferred nameSENP1
PFAMsPeptidase_C48
Max annot lvl33208|Metazoa
KEGG koko:K08592
GOsGO:0002682,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005912,GO:0005924,GO:0005925,GO:0006282,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0006915,GO:0006919,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010724,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0012505,GO:0016020,GO:0016787,GO:0016925,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0023052,GO:0030054,GO:0030055,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0036211,GO:0042176,GO:0042177,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045637,GO:0045646,GO:0045739,GO:0045861,GO:0045862,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070161,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0097190,GO:0140096,GO:1901564,GO:1901799,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903706,GO:1904331,GO:1904333,GO:2000026,GO:2000058,GO:2000059,GO:2000112,GO:2000116,GO:2000278,GO:2000573,GO:2001020,GO:2001022,GO:2001056,GO:2001141
Evalue2.14e-05
EggNOG OGsCOG5160@1|root,KOG0778@2759|Eukaryota,38HPZ@33154|Opisthokonta,3BCKW@33208|Metazoa,3CYJ0@33213|Bilateria,48944@7711|Chordata,48Y5A@7742|Vertebrata,49Z7W@7898|Actinopterygii
EC3.4.22.68
DescriptionSUMO1 sentrin specific peptidase 1
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3152Gchil3152Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 515868..517515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3152.t1Gchil3152.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 515868..517515 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3152.t1.start1Gchil3152.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 515868..515870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3152.t1.CDS1Gchil3152.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 515868..517386 +
Gchil3152.t1.CDS2Gchil3152.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 517511..517515 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3152.t1.exon1Gchil3152.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 515868..517386 +
Gchil3152.t1.exon2Gchil3152.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 517511..517515 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3152.t1.intron1Gchil3152.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 517387..517510 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3152.t1.stop1Gchil3152.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 517513..517515 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3152.t1 ID=Gchil3152.t1|Name=Gchil3152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=508bp
MPVFTFFKALSAGVQETLNRVKDTVSAFSDTVCTGAAEVVHHISPRKRRR
SSSASAGSLPATPAPLPTSSSLRSSPSVPSQPHAKRPRLATPEIDSSHFP
SPFLPPRVPLSSETPPRPRPSQSRPDQRIEAAITHGLTSTPRSRFLSTPA
RYSSHVPAFDPQRQFFRNTYAGLLRRRHTSEPASAPTKSTPKSIHPTAVR
KSVYKKRFHNTQRHFVSPKVLAKNTRLQPLRQSYPSLQQHRSPRPSQLRS
QQEALEVSVESRPQERSFLRNENLETIPSPATRAEQIANLPPTIAALLRS
DNPLCKKIWKLHKQNIERLASSDQKKRFLELEHFVKWQQLETIKREREQS
RRIFSLRPLLKPLTEEKPQAEQPPHRASHFYENRYWLPPEENWYEDQDDH
AQKERDLSVTVTDPRSAYAPLTDSAVSRLRATLADASNQHSELSRVDGCI
IRGEDLRTLRPNNWLNDEIVNSYMNLLAERTTFARKTKSDENSRPNGHPN
SFVNENE*
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spliced messenger RNA

>Gchil3152.t1 ID=Gchil3152.t1|Name=Gchil3152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00004382_pilon:515868..517515+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGTGTTCACCTTCTTCAAAGCTCTGAGCGCCGGCGTCCAAGAGAC
GCTGAATCGTGTCAAGGACACCGTTTCTGCCTTCTCAGACACAGTTTGCA
CCGGCGCCGCTGAGGTTGTACACCATATTTCTCCGAGAAAACGTCGTCGC
TCTTCTTCAGCTTCCGCCGGCTCTTTGCCTGCTACTCCAGCACCCCTTCC
CACATCATCGTCCCTCCGTTCATCGCCCTCAGTACCATCTCAGCCCCATG
CCAAACGCCCGCGACTCGCAACTCCCGAAATCGACTCCTCGCACTTTCCA
AGCCCTTTTCTTCCGCCCCGAGTCCCTCTATCTTCCGAAACACCCCCGCG
CCCACGACCATCACAATCTCGACCCGACCAACGCATCGAAGCTGCTATAA
CTCATGGTCTTACTTCTACGCCACGCTCTCGCTTCCTCTCCACTCCTGCC
AGATACAGCTCGCATGTACCTGCATTCGACCCGCAGCGGCAATTCTTTCG
CAACACCTATGCCGGCCTTCTCCGGCGAAGACATACGTCTGAGCCCGCTT
CGGCACCGACAAAATCTACGCCAAAATCCATACACCCGACCGCAGTGAGG
AAGTCTGTTTACAAGAAGCGCTTTCACAATACACAGCGACACTTTGTATC
CCCCAAAGTACTGGCGAAGAACACTCGATTGCAACCTTTGCGACAAAGTT
ACCCGTCACTCCAACAGCACAGGTCACCGCGCCCTTCTCAGTTGCGCTCA
CAGCAAGAAGCTCTTGAAGTTTCCGTTGAGAGTCGGCCTCAAGAAAGGTC
GTTTCTCAGAAATGAAAATCTTGAAACAATACCTTCCCCTGCTACAAGGG
CTGAGCAGATTGCTAATCTTCCTCCGACAATTGCTGCTTTGCTCCGATCC
GACAACCCTCTTTGCAAGAAGATATGGAAACTGCATAAGCAGAACATAGA
GCGCCTCGCATCCTCAGATCAAAAGAAGAGGTTTCTCGAGCTGGAGCATT
TCGTCAAATGGCAACAACTTGAAACAATCAAGCGCGAGCGGGAACAGTCG
CGTCGCATCTTCAGTCTCCGTCCACTCTTGAAGCCACTGACTGAAGAGAA
ACCTCAAGCGGAACAACCGCCGCACCGTGCATCACACTTCTATGAAAATC
GGTATTGGCTCCCACCTGAGGAGAACTGGTATGAAGATCAAGATGATCAC
GCTCAAAAAGAGCGTGATTTGTCAGTCACAGTCACAGATCCCCGTTCCGC
GTATGCTCCTCTCACCGATTCAGCAGTATCCCGTTTACGAGCGACGCTAG
CGGATGCTTCAAATCAGCACAGCGAGTTGTCTCGTGTTGACGGTTGCATT
ATTCGAGGGGAAGATCTACGGACACTGCGGCCCAATAACTGGCTGAATGA
CGAGATCGTCAATTCCTACATGAATCTTCTGGCTGAGAGAACGACATTCG
CCAGGAAGACTAAGTCGGATGAAAACTCAAGACCAAACGGCCACCCAAAC
AGTTTCGTGAATGAAAATGagtaa
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protein sequence of Gchil3152.t1

>Gchil3152.t1 ID=Gchil3152.t1|Name=Gchil3152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=508bp
MPVFTFFKALSAGVQETLNRVKDTVSAFSDTVCTGAAEVVHHISPRKRRR
SSSASAGSLPATPAPLPTSSSLRSSPSVPSQPHAKRPRLATPEIDSSHFP
SPFLPPRVPLSSETPPRPRPSQSRPDQRIEAAITHGLTSTPRSRFLSTPA
RYSSHVPAFDPQRQFFRNTYAGLLRRRHTSEPASAPTKSTPKSIHPTAVR
KSVYKKRFHNTQRHFVSPKVLAKNTRLQPLRQSYPSLQQHRSPRPSQLRS
QQEALEVSVESRPQERSFLRNENLETIPSPATRAEQIANLPPTIAALLRS
DNPLCKKIWKLHKQNIERLASSDQKKRFLELEHFVKWQQLETIKREREQS
RRIFSLRPLLKPLTEEKPQAEQPPHRASHFYENRYWLPPEENWYEDQDDH
AQKERDLSVTVTDPRSAYAPLTDSAVSRLRATLADASNQHSELSRVDGCI
IRGEDLRTLRPNNWLNDEIVNSYMNLLAERTTFARKTKSDENSRPNGHPN
SFVNENE*
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mRNA from alignment at tig00004382_pilon:515868..517515+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3152.t1 ID=Gchil3152.t1|Name=Gchil3152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1648bp|location=Sequence derived from alignment at tig00004382_pilon:515868..517515+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGTGTTCACCTTCTTCAAAGCTCTGAGCGCCGGCGTCCAAGAGAC
GCTGAATCGTGTCAAGGACACCGTTTCTGCCTTCTCAGACACAGTTTGCA
CCGGCGCCGCTGAGGTTGTACACCATATTTCTCCGAGAAAACGTCGTCGC
TCTTCTTCAGCTTCCGCCGGCTCTTTGCCTGCTACTCCAGCACCCCTTCC
CACATCATCGTCCCTCCGTTCATCGCCCTCAGTACCATCTCAGCCCCATG
CCAAACGCCCGCGACTCGCAACTCCCGAAATCGACTCCTCGCACTTTCCA
AGCCCTTTTCTTCCGCCCCGAGTCCCTCTATCTTCCGAAACACCCCCGCG
CCCACGACCATCACAATCTCGACCCGACCAACGCATCGAAGCTGCTATAA
CTCATGGTCTTACTTCTACGCCACGCTCTCGCTTCCTCTCCACTCCTGCC
AGATACAGCTCGCATGTACCTGCATTCGACCCGCAGCGGCAATTCTTTCG
CAACACCTATGCCGGCCTTCTCCGGCGAAGACATACGTCTGAGCCCGCTT
CGGCACCGACAAAATCTACGCCAAAATCCATACACCCGACCGCAGTGAGG
AAGTCTGTTTACAAGAAGCGCTTTCACAATACACAGCGACACTTTGTATC
CCCCAAAGTACTGGCGAAGAACACTCGATTGCAACCTTTGCGACAAAGTT
ACCCGTCACTCCAACAGCACAGGTCACCGCGCCCTTCTCAGTTGCGCTCA
CAGCAAGAAGCTCTTGAAGTTTCCGTTGAGAGTCGGCCTCAAGAAAGGTC
GTTTCTCAGAAATGAAAATCTTGAAACAATACCTTCCCCTGCTACAAGGG
CTGAGCAGATTGCTAATCTTCCTCCGACAATTGCTGCTTTGCTCCGATCC
GACAACCCTCTTTGCAAGAAGATATGGAAACTGCATAAGCAGAACATAGA
GCGCCTCGCATCCTCAGATCAAAAGAAGAGGTTTCTCGAGCTGGAGCATT
TCGTCAAATGGCAACAACTTGAAACAATCAAGCGCGAGCGGGAACAGTCG
CGTCGCATCTTCAGTCTCCGTCCACTCTTGAAGCCACTGACTGAAGAGAA
ACCTCAAGCGGAACAACCGCCGCACCGTGCATCACACTTCTATGAAAATC
GGTATTGGCTCCCACCTGAGGAGAACTGGTATGAAGATCAAGATGATCAC
GCTCAAAAAGAGCGTGATTTGTCAGTCACAGTCACAGATCCCCGTTCCGC
GTATGCTCCTCTCACCGATTCAGCAGTATCCCGTTTACGAGCGACGCTAG
CGGATGCTTCAAATCAGCACAGCGAGTTGTCTCGTGTTGACGGTTGCATT
ATTCGAGGGGAAGATCTACGGACACTGCGGCCCAATAACTGGCTGAATGA
CGAGATCGTCAATTCCTACATGAATCTTCTGGCTGAGAGAACGACATTCG
CCAGGAAGACTAAGTCGGATGAAAACTCAAGACCAAACGGCCACCCAAAC
AGTTTCGTGAATGAAAATGGTTTGCATGATAAGAATGTGTCAAAGAAGAA
AACGCCTTCCGCCCACGCCCAACACATACCGAAAGTCAAAGTGATTTCTT
CGTTCTTCTATTCTACTttgttcaaattcaatcctcgaacaagagtaa
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Coding sequence (CDS) from alignment at tig00004382_pilon:515868..517515+

>Gchil3152.t1 ID=Gchil3152.t1|Name=Gchil3152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00004382_pilon:515868..517515+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGTGTTCACCTTCTTCAAAGCTCTGAGCGCCGGCGTCCAAGAGAC
GCTGAATCGTGTCAAGGACACCGTTTCTGCCTTCTCAGACACAGTTTGCA
CCGGCGCCGCTGAGGTTGTACACCATATTTCTCCGAGAAAACGTCGTCGC
TCTTCTTCAGCTTCCGCCGGCTCTTTGCCTGCTACTCCAGCACCCCTTCC
CACATCATCGTCCCTCCGTTCATCGCCCTCAGTACCATCTCAGCCCCATG
CCAAACGCCCGCGACTCGCAACTCCCGAAATCGACTCCTCGCACTTTCCA
AGCCCTTTTCTTCCGCCCCGAGTCCCTCTATCTTCCGAAACACCCCCGCG
CCCACGACCATCACAATCTCGACCCGACCAACGCATCGAAGCTGCTATAA
CTCATGGTCTTACTTCTACGCCACGCTCTCGCTTCCTCTCCACTCCTGCC
AGATACAGCTCGCATGTACCTGCATTCGACCCGCAGCGGCAATTCTTTCG
CAACACCTATGCCGGCCTTCTCCGGCGAAGACATACGTCTGAGCCCGCTT
CGGCACCGACAAAATCTACGCCAAAATCCATACACCCGACCGCAGTGAGG
AAGTCTGTTTACAAGAAGCGCTTTCACAATACACAGCGACACTTTGTATC
CCCCAAAGTACTGGCGAAGAACACTCGATTGCAACCTTTGCGACAAAGTT
ACCCGTCACTCCAACAGCACAGGTCACCGCGCCCTTCTCAGTTGCGCTCA
CAGCAAGAAGCTCTTGAAGTTTCCGTTGAGAGTCGGCCTCAAGAAAGGTC
GTTTCTCAGAAATGAAAATCTTGAAACAATACCTTCCCCTGCTACAAGGG
CTGAGCAGATTGCTAATCTTCCTCCGACAATTGCTGCTTTGCTCCGATCC
GACAACCCTCTTTGCAAGAAGATATGGAAACTGCATAAGCAGAACATAGA
GCGCCTCGCATCCTCAGATCAAAAGAAGAGGTTTCTCGAGCTGGAGCATT
TCGTCAAATGGCAACAACTTGAAACAATCAAGCGCGAGCGGGAACAGTCG
CGTCGCATCTTCAGTCTCCGTCCACTCTTGAAGCCACTGACTGAAGAGAA
ACCTCAAGCGGAACAACCGCCGCACCGTGCATCACACTTCTATGAAAATC
GGTATTGGCTCCCACCTGAGGAGAACTGGTATGAAGATCAAGATGATCAC
GCTCAAAAAGAGCGTGATTTGTCAGTCACAGTCACAGATCCCCGTTCCGC
GTATGCTCCTCTCACCGATTCAGCAGTATCCCGTTTACGAGCGACGCTAG
CGGATGCTTCAAATCAGCACAGCGAGTTGTCTCGTGTTGACGGTTGCATT
ATTCGAGGGGAAGATCTACGGACACTGCGGCCCAATAACTGGCTGAATGA
CGAGATCGTCAATTCCTACATGAATCTTCTGGCTGAGAGAACGACATTCG
CCAGGAAGACTAAGTCGGATGAAAACTCAAGACCAAACGGCCACCCAAAC
AGTTTCGTGAATGAAAATGagtaa
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