Gchil3146.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3146.t1
Unique Name	Gchil3146.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:446883..448862 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_003063-tr
PFAMs	RVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	4.16e-15
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3146	Gchil3146	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 446883..448862 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3146.t1	Gchil3146.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 446883..448862 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3146.t1.start1	Gchil3146.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 446883..446885 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3146.t1.CDS1	Gchil3146.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 446883..447393 +
Gchil3146.t1.CDS2	Gchil3146.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 447652..448862 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3146.t1.exon1	Gchil3146.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 446883..447393 +
Gchil3146.t1.exon2	Gchil3146.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 447652..448862 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3146.t1.intron1	Gchil3146.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004382_pilon 447394..447651 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3146.t1.stop1	Gchil3146.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 448860..448862 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:446883..448862+
coding sequence from alignment at tig00004382_pilon:446883..448862+

mRNA sequence

>Gchil3146.t1 ID=Gchil3146.t1|Name=Gchil3146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=574bp
MGNVQSEDPEVKKNELYVWNWETVPPNLARPQVNAITPEEKELLPISMEK
LLQAQVEDESCKETAQFVRTPGSLVDYERFGLLCRRSPLDGALQRVIPTS
LRAPFLYLAHFPRLGGHPGGRRVYQTLRKFFYWPLMAQDLWQTARNRASC
AQIRGSRASHQAKLKLFPAAGMKNVTTTAYHPQSNDQAQRFNRTLLDPLA
HYVSEHQLDWDEYVEPLVYAYNTQVHAFTGTTPFDLTLTRAPPPIAFDLP
ESIIPQDITEGMTATQAKRYSSRRIDRILQSVKTVLTKAQRRYKCNFDKA
DWKTPTFEKVDLFYLDWPPKDSEELEDTTWKLLPRSTGPYKVLKANEHTI
ILLIDGLQDTVSIYRVTRAPSSSRPRKSQPPDPGEAPRPQVDTQVSTSPK
AVPADWTSPTDPMVNAKYHDPSLPTDSDRFALMDHTLLPEDEYQQEYLIE
RIISAGTGEDGTLRYRVRWFCYTPEEDTWQETQTIPVSFIAHYWRIISYS
ERGPQEGATNWRRISHSERGLQEGATICPNNPTISPKYPKKSPEPPPDTM
VRRSTTVRRSSRIREQIQPFGDT*

spliced messenger RNA

>Gchil3146.t1 ID=Gchil3146.t1|Name=Gchil3146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00004382_pilon:446883..448862+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgggtaatgtgcaatcggaggatcctgaggtaaagaagaacgaattata
cgtatggaactgggagaccgtaccacccaatttggcacgacctcaggtta
atgcgataaccccggaggaaaaagagctgctccctataagcatggagaaa
ctcctacaggcgcaggtcgaagacgaatcctgcaaggaaacagcccaatt
cgtaagaaccccaggatccctggttgactatgaacgatttggactactat
gtcgccgctcaccgctggatggcgcactccaacgggtaataccaacttcg
ctaagggcgccattcctatacctcgcccatttcccccgcttgggtggcca
tcctggaggccgtcgagtgtaccagaccctaaggaagttcttctactggc
cactaatggcgcaggacctatggcaaaccgcacggaaccgtgcatcttgc
gcacagatccgagggtctcgcgccagccatcaggccaaactgaagctctt
ccccgccgcaggtatgaaaaatgtgaccaccacggcgtaccacccgcaaa
gcaatgaccaagcccaacgcttcaaccgcacccttctggacccattggcg
cactacgtttcggagcaccaattggattgggacgaatacgttgagccact
ggtttatgcctacaacacgcaggtgcacgcttttacagggacaacgcctt
tcgacttaacgttaacaagagcgccgcccccgatagcctttgaccttccg
gagtctatcataccccaggacataaccgaagggatgactgctactcaggc
gaagcgctactcgagccgacgcattgaccgcattctccaatcggtcaaaa
ctgtactaaccaaagcccaacggcgctacaagtgcaatttcgacaaagcc
gattggaaaacaccgacctttgagaaagtagatctgttttacctggactg
gccaccgaaggacagtgaggaactcgaggacactacttggaagctcttac
cccgctctacgggaccatacaaagtccttaaggccaatgaacacaccatc
attttactcattgacggcctacaggacaccgtgtctatttaccgcgtgac
acgagctcccagttcctccagaccacgaaagtcccagccccctgacccag
gggaagcaccacgacctcaggtcgacactcaagtctctacatcccccaag
gcggttcccgcggactggactagccccacggacccgatggtcaacgccaa
gtaccatgacccatctctcccaaccgactccgatagattcgctcttatgg
accacactctccttccggaggatgaataccaacaggaatatttgattgag
cgcatcatctccgccggtacgggagaagatggaactctgcgctatcgcgt
ccgttggttctgctacacacccgaggaagatacttggcaagaaacacaaa
ccattcccgtttcttttatcgcccactactggcgcataatcagctactcg
gagcgcggccctcaagagggggcaaccaattggcgcagaatcagccactc
ggagcgcggccttcaggaaggggcaaccatttgtccgaataatccaacca
ttagcccgaaatatcccaaaaagtctcccgaaccgcctccagacacgatg
gttcgccggagcacgacggttcgtcgtagctcccgcatcagggaacaaat
ccagcccttcggtgacacctga

protein sequence of Gchil3146.t1

>Gchil3146.t1 ID=Gchil3146.t1|Name=Gchil3146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=574bp
MGNVQSEDPEVKKNELYVWNWETVPPNLARPQVNAITPEEKELLPISMEK
LLQAQVEDESCKETAQFVRTPGSLVDYERFGLLCRRSPLDGALQRVIPTS
LRAPFLYLAHFPRLGGHPGGRRVYQTLRKFFYWPLMAQDLWQTARNRASC
AQIRGSRASHQAKLKLFPAAGMKNVTTTAYHPQSNDQAQRFNRTLLDPLA
HYVSEHQLDWDEYVEPLVYAYNTQVHAFTGTTPFDLTLTRAPPPIAFDLP
ESIIPQDITEGMTATQAKRYSSRRIDRILQSVKTVLTKAQRRYKCNFDKA
DWKTPTFEKVDLFYLDWPPKDSEELEDTTWKLLPRSTGPYKVLKANEHTI
ILLIDGLQDTVSIYRVTRAPSSSRPRKSQPPDPGEAPRPQVDTQVSTSPK
AVPADWTSPTDPMVNAKYHDPSLPTDSDRFALMDHTLLPEDEYQQEYLIE
RIISAGTGEDGTLRYRVRWFCYTPEEDTWQETQTIPVSFIAHYWRIISYS
ERGPQEGATNWRRISHSERGLQEGATICPNNPTISPKYPKKSPEPPPDTM
VRRSTTVRRSSRIREQIQPFGDT*

mRNA from alignment at tig00004382_pilon:446883..448862+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3146.t1 ID=Gchil3146.t1|Name=Gchil3146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00004382_pilon:446883..448862+ (Gracilaria chilensis NLEC103_M9 male)
atgggtaatgtgcaatcggaggatcctgaggtaaagaagaacgaattata
cgtatggaactgggagaccgtaccacccaatttggcacgacctcaggtta
atgcgataaccccggaggaaaaagagctgctccctataagcatggagaaa
ctcctacaggcgcaggtcgaagacgaatcctgcaaggaaacagcccaatt
cgtaagaaccccaggatccctggttgactatgaacgatttggactactat
gtcgccgctcaccgctggatggcgcactccaacgggtaataccaacttcg
ctaagggcgccattcctatacctcgcccatttcccccgcttgggtggcca
tcctggaggccgtcgagtgtaccagaccctaaggaagttcttctactggc
cactaatggcgcaggacctatggcaaaccgcacggaaccgtgcatcttgc
gcacagatccgagggtctcgcgccagccatcaggccaaactgaagctctt
ccccgccgcaggtccgatgtaatttgtcgcaattgatatacttgggcctt
tgcctaagtcgtccaatgggaaacggtttgttttcgttataaccgatagg
tttaccaaacatatccgaacccgacccctaggaaagacaattgccacgga
tgtcgccacggccttcttgtcccactggttatatctatatcacatgccac
tctagatccttacggataacggcagccagtttgtatccaaattcttctcg
catgtctgtgctaccttaggtatgaaaaatgtgaccaccacggcgtacca
cccgcaaagcaatgaccaagcccaacgcttcaaccgcacccttctggacc
cattggcgcactacgtttcggagcaccaattggattgggacgaatacgtt
gagccactggtttatgcctacaacacgcaggtgcacgcttttacagggac
aacgcctttcgacttaacgttaacaagagcgccgcccccgatagcctttg
accttccggagtctatcataccccaggacataaccgaagggatgactgct
actcaggcgaagcgctactcgagccgacgcattgaccgcattctccaatc
ggtcaaaactgtactaaccaaagcccaacggcgctacaagtgcaatttcg
acaaagccgattggaaaacaccgacctttgagaaagtagatctgttttac
ctggactggccaccgaaggacagtgaggaactcgaggacactacttggaa
gctcttaccccgctctacgggaccatacaaagtccttaaggccaatgaac
acaccatcattttactcattgacggcctacaggacaccgtgtctatttac
cgcgtgacacgagctcccagttcctccagaccacgaaagtcccagccccc
tgacccaggggaagcaccacgacctcaggtcgacactcaagtctctacat
cccccaaggcggttcccgcggactggactagccccacggacccgatggtc
aacgccaagtaccatgacccatctctcccaaccgactccgatagattcgc
tcttatggaccacactctccttccggaggatgaataccaacaggaatatt
tgattgagcgcatcatctccgccggtacgggagaagatggaactctgcgc
tatcgcgtccgttggttctgctacacacccgaggaagatacttggcaaga
aacacaaaccattcccgtttcttttatcgcccactactggcgcataatca
gctactcggagcgcggccctcaagagggggcaaccaattggcgcagaatc
agccactcggagcgcggccttcaggaaggggcaaccatttgtccgaataa
tccaaccattagcccgaaatatcccaaaaagtctcccgaaccgcctccag
acacgatggttcgccggagcacgacggttcgtcgtagctcccgcatcagg
gaacaaatccagcccttcggtgacacctga

Coding sequence (CDS) from alignment at tig00004382_pilon:446883..448862+

>Gchil3146.t1 ID=Gchil3146.t1|Name=Gchil3146.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00004382_pilon:446883..448862+ (Gracilaria chilensis NLEC103_M9 male)
atgggtaatgtgcaatcggaggatcctgaggtaaagaagaacgaattata
cgtatggaactgggagaccgtaccacccaatttggcacgacctcaggtta
atgcgataaccccggaggaaaaagagctgctccctataagcatggagaaa
ctcctacaggcgcaggtcgaagacgaatcctgcaaggaaacagcccaatt
cgtaagaaccccaggatccctggttgactatgaacgatttggactactat
gtcgccgctcaccgctggatggcgcactccaacgggtaataccaacttcg
ctaagggcgccattcctatacctcgcccatttcccccgcttgggtggcca
tcctggaggccgtcgagtgtaccagaccctaaggaagttcttctactggc
cactaatggcgcaggacctatggcaaaccgcacggaaccgtgcatcttgc
gcacagatccgagggtctcgcgccagccatcaggccaaactgaagctctt
ccccgccgcaggtatgaaaaatgtgaccaccacggcgtaccacccgcaaa
gcaatgaccaagcccaacgcttcaaccgcacccttctggacccattggcg
cactacgtttcggagcaccaattggattgggacgaatacgttgagccact
ggtttatgcctacaacacgcaggtgcacgcttttacagggacaacgcctt
tcgacttaacgttaacaagagcgccgcccccgatagcctttgaccttccg
gagtctatcataccccaggacataaccgaagggatgactgctactcaggc
gaagcgctactcgagccgacgcattgaccgcattctccaatcggtcaaaa
ctgtactaaccaaagcccaacggcgctacaagtgcaatttcgacaaagcc
gattggaaaacaccgacctttgagaaagtagatctgttttacctggactg
gccaccgaaggacagtgaggaactcgaggacactacttggaagctcttac
cccgctctacgggaccatacaaagtccttaaggccaatgaacacaccatc
attttactcattgacggcctacaggacaccgtgtctatttaccgcgtgac
acgagctcccagttcctccagaccacgaaagtcccagccccctgacccag
gggaagcaccacgacctcaggtcgacactcaagtctctacatcccccaag
gcggttcccgcggactggactagccccacggacccgatggtcaacgccaa
gtaccatgacccatctctcccaaccgactccgatagattcgctcttatgg
accacactctccttccggaggatgaataccaacaggaatatttgattgag
cgcatcatctccgccggtacgggagaagatggaactctgcgctatcgcgt
ccgttggttctgctacacacccgaggaagatacttggcaagaaacacaaa
ccattcccgtttcttttatcgcccactactggcgcataatcagctactcg
gagcgcggccctcaagagggggcaaccaattggcgcagaatcagccactc
ggagcgcggccttcaggaaggggcaaccatttgtccgaataatccaacca
ttagcccgaaatatcccaaaaagtctcccgaaccgcctccagacacgatg
gttcgccggagcacgacggttcgtcgtagctcccgcatcagggaacaaat
ccagcccttcggtgacacctga