Gchil3144.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3144.t1
Unique NameGchil3144.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:442579..444099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3144Gchil3144Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 442579..444099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3144.t1Gchil3144.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 442579..444099 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3144.t1.stop1Gchil3144.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 442579..442581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3144.t1.CDS1Gchil3144.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 442579..443118 -
Gchil3144.t1.CDS2Gchil3144.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 443884..444099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3144.t1.exon1Gchil3144.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 442579..443118 -
Gchil3144.t1.exon2Gchil3144.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 443884..444099 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3144.t1.intron1Gchil3144.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 443119..443883 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3144.t1.start1Gchil3144.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 444097..444099 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3144.t1 ID=Gchil3144.t1|Name=Gchil3144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MNPNAGSNPFQPSSEDVPSEAPSNTAGYASQPTAHLGPYRSFSTPYTGFR
SVPLPQPTVAPMPNAAYVVSAGTVVYTEFIAKLALFLLLDAYDTFRVWYM
PPTARKYARELDLSLILGSRANHADFLHLVDLIDRVDWSGVPADQSARKT
RAGHYDQSPGRTASAGDFVWCDPRTRQLITSEQARFLRENPRDMPPNQHT
GYVYDVTPSENGEEPYEEALGAEAELGYEDEPELAGVATSVDRSAAAGVA
Q*
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spliced messenger RNA

>Gchil3144.t1 ID=Gchil3144.t1|Name=Gchil3144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004382_pilon:442579..444099- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCGAACGCCGGGTCCAACCCGTTTCAGCCCTCCTCTGAGGATGT
GCCTTCTGAAGCTCCGTCCAACACTGCTGGTTATGCGTCGCAGCCTACTG
CTCATCTCGGTCCATACCGTTCGTTCTCTACACCGTACACCGGATTCCGG
TCGGTACCGTTACCTCAGCCCACCGTGGCTCCGATGCCGAACGCGGCTTA
CGTCGTCTCTGCGGGTACGGTGGTCTATACCGAGTTTATCGCCAAGTTGG
CCCTCTTCCTCCTGTTGGATGCTTATGATACCTTTAGAGTTTGGTACATG
CCGCCAACAGCGCGAAAGTATGCGAGAGAACTCGATCTTTCCCTTATCCT
GGGATCCCGTGCGAACCATGCCGACTTCCTCCATCTTGTGGATTTGATCG
ACCGTGTCGATTGGTCTGGAGTGCCAGCTGATCAATCCGCTCGCAAAACC
CGTGCAGGACACTACGACCAATCTCCTGGGCGAACAGCAAGTGCTGGAGA
TTTCGTTTGGTGCGACCCCAGGACGCGCCAGTTGATCACCTCCGAGCAGG
CTCGCTTTCTTCGGGAGAACCCGCGTGACATGCCACCGAACCAGCATACT
GGATACGTGTACGACGTCACTCCATCCGAGAACGGAGAGGAACCGTATGA
GGAAGCGCTGGGAGCTGAGGCTGAACTCGGTTACGAGGACGAGCCAGAGC
TGGCAGGCGTAGCGACTTCCGTCGATCGATCCGCAGCGGCGGGAGTTGCT
CAATAG
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protein sequence of Gchil3144.t1

>Gchil3144.t1 ID=Gchil3144.t1|Name=Gchil3144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MNPNAGSNPFQPSSEDVPSEAPSNTAGYASQPTAHLGPYRSFSTPYTGFR
SVPLPQPTVAPMPNAAYVVSAGTVVYTEFIAKLALFLLLDAYDTFRVWYM
PPTARKYARELDLSLILGSRANHADFLHLVDLIDRVDWSGVPADQSARKT
RAGHYDQSPGRTASAGDFVWCDPRTRQLITSEQARFLRENPRDMPPNQHT
GYVYDVTPSENGEEPYEEALGAEAELGYEDEPELAGVATSVDRSAAAGVA
Q*
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mRNA from alignment at tig00004382_pilon:442579..444099-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3144.t1 ID=Gchil3144.t1|Name=Gchil3144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00004382_pilon:442579..444099- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCGAACGCCGGGTCCAACCCGTTTCAGCCCTCCTCTGAGGATGT
GCCTTCTGAAGCTCCGTCCAACACTGCTGGTTATGCGTCGCAGCCTACTG
CTCATCTCGGTCCATACCGTTCGTTCTCTACACCGTACACCGGATTCCGG
TCGGTACCGTTACCTCAGCCCACCGTGGCTCCGATGCCGAACGCGGCTTA
CGTCGTCTCTGCGGGTGTGATTCTAGCTCCTTTTAGTCGTGCTCAGCGGA
GCTAGCCGCACCCTGAAAATTTCTATGGACGAAATCCTCTCGACAACTTT
GAACTTTTCGCGCAAGCGCCCTGGTTTGATCCAGTTGCTATCCGCGATGA
CACGTTGATACAACAGTATGTACACGGAGGGTACTTCCCTGACGGTATTC
CGAAACACGCGATTCATAGCGACAACTGGGCGAGCCATATCGCTTTGCCA
GACAACGCGATTGCGCGATATTCAACGGAAACCTTGTCCGAAGCCCGTAC
GCGGTTCACCAAGCTGATTTACCAGCGTCTTCACCGATTCATCAGTACGG
TTCTCTTCCGGCAGGACTGGGAACTAGATATCTGGAAAGCCCGTACCGAC
GGTGAAGGTTAATCGTATATCGAGGCACTCGTTGAAGTCTATGTTAGCGG
TTGGCGCGGTGTGCGCGGTGTGCGTGATGCAGCTATCTGCTTTCAGAAAC
CTCTTCTCCGTGCGGAGTTCCGCTTCCTTCGAAAGCGGGACATTCCGTAT
TGGGAATATCCCCTTTGGGAACGTCGTACTCGATCACGTTTGGGCTATTT
GGTGCCGTATCAAATGATCGAGATTGACCGCATCCGGCGGAACGCGCGCT
TCGGGCGCTACATCGGTATTCCGGAGCATTGGGCGGCGATCGAGAGTCCT
CGTGGTTGCCCTGTGGAGCTCCCACCGGGGATCTCCTACATCGGGTCCGC
GTTGGTTAACGACCCGTTCTCGGGATATTAGACGGTGGTCTATACCGAGT
TTATCGCCAAGTTGGCCCTCTTCCTCCTGTTGGATGCTTATGATACCTTT
AGAGTTTGGTACATGCCGCCAACAGCGCGAAAGTATGCGAGAGAACTCGA
TCTTTCCCTTATCCTGGGATCCCGTGCGAACCATGCCGACTTCCTCCATC
TTGTGGATTTGATCGACCGTGTCGATTGGTCTGGAGTGCCAGCTGATCAA
TCCGCTCGCAAAACCCGTGCAGGACACTACGACCAATCTCCTGGGCGAAC
AGCAAGTGCTGGAGATTTCGTTTGGTGCGACCCCAGGACGCGCCAGTTGA
TCACCTCCGAGCAGGCTCGCTTTCTTCGGGAGAACCCGCGTGACATGCCA
CCGAACCAGCATACTGGATACGTGTACGACGTCACTCCATCCGAGAACGG
AGAGGAACCGTATGAGGAAGCGCTGGGAGCTGAGGCTGAACTCGGTTACG
AGGACGAGCCAGAGCTGGCAGGCGTAGCGACTTCCGTCGATCGATCCGCA
GCGGCGGGAGTTGCTCAATAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:442579..444099-

>Gchil3144.t1 ID=Gchil3144.t1|Name=Gchil3144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00004382_pilon:442579..444099- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCGAACGCCGGGTCCAACCCGTTTCAGCCCTCCTCTGAGGATGT
GCCTTCTGAAGCTCCGTCCAACACTGCTGGTTATGCGTCGCAGCCTACTG
CTCATCTCGGTCCATACCGTTCGTTCTCTACACCGTACACCGGATTCCGG
TCGGTACCGTTACCTCAGCCCACCGTGGCTCCGATGCCGAACGCGGCTTA
CGTCGTCTCTGCGGGTACGGTGGTCTATACCGAGTTTATCGCCAAGTTGG
CCCTCTTCCTCCTGTTGGATGCTTATGATACCTTTAGAGTTTGGTACATG
CCGCCAACAGCGCGAAAGTATGCGAGAGAACTCGATCTTTCCCTTATCCT
GGGATCCCGTGCGAACCATGCCGACTTCCTCCATCTTGTGGATTTGATCG
ACCGTGTCGATTGGTCTGGAGTGCCAGCTGATCAATCCGCTCGCAAAACC
CGTGCAGGACACTACGACCAATCTCCTGGGCGAACAGCAAGTGCTGGAGA
TTTCGTTTGGTGCGACCCCAGGACGCGCCAGTTGATCACCTCCGAGCAGG
CTCGCTTTCTTCGGGAGAACCCGCGTGACATGCCACCGAACCAGCATACT
GGATACGTGTACGACGTCACTCCATCCGAGAACGGAGAGGAACCGTATGA
GGAAGCGCTGGGAGCTGAGGCTGAACTCGGTTACGAGGACGAGCCAGAGC
TGGCAGGCGTAGCGACTTCCGTCGATCGATCCGCAGCGGCGGGAGTTGCT
CAATAG
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