Gchil3134.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3134.t1
Unique NameGchil3134.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:391601..392728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215358.XP_010737184.1
Preferred nameLYPLA1
PFAMsAbhydrolase_2
Max annot lvl33208|Metazoa
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K06128,ko:K06130
KEGG ReactionR02746,R02747,R03416,R03417
KEGG Pathwayko00564,ko05231,map00564,map05231
GOsGO:0002084,GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008474,GO:0009056,GO:0009057,GO:0009987,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019222,GO:0019538,GO:0030163,GO:0032768,GO:0032879,GO:0032880,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042996,GO:0042997,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050999,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0051341,GO:0052689,GO:0060341,GO:0060627,GO:0065007,GO:0065009,GO:0070201,GO:0071704,GO:0090087,GO:0098599,GO:0098732,GO:0098734,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904950,GO:1905475,GO:1905476
Evalue1.19e-09
EggNOG OGsCOG0400@1|root,KOG2112@2759|Eukaryota,38RN5@33154|Opisthokonta,3BCBX@33208|Metazoa,3CRQS@33213|Bilateria,48294@7711|Chordata,49224@7742|Vertebrata,49RD4@7898|Actinopterygii
EC3.1.1.5
DescriptionLysophospholipase I
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3134Gchil3134Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 391601..392728 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3134.t1.start1Gchil3134.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 391601..391603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3134.t1.CDS1Gchil3134.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 391601..392728 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3134.t1.exon1Gchil3134.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 391601..392728 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3134.t1.stop1Gchil3134.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 392726..392728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3134.t1Gchil3134.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 391601..392728 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3134.t1 ID=Gchil3134.t1|Name=Gchil3134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=376bp
MCTHPNQLKPRPLHSAVARKSLIAILHQLTAMPFVNALLFLAFFTSHTAL
VAAWNPLDIIKDYFPCTVLRLSRQQWTTTYNEPSLIPLSERNVTQKQIKG
LVAGVNFTCGSTIPVTGHTLLCSTQGFSFEPPRSARYAVVFVHGITSPGR
EASTISVLARLLATDPDLGSQIRIDFPLYQLRRLTFSEFRSPPVEVARSY
FDLLAPPKSTALQDLIAADTDRLGLYRATQFIDFTVRSQMCKASIPTSRV
AILGHSLGGFATLETVMSTGLDLAGAIVVSGSLPRAGDYIQANVQAFNTM
PRQFNITMIHGTNDDIVPFVFANISAQILKPVFNSLGGGFNFKPLQGLDH
FNTLFRDRQFYDLAQRALRQAFIRS*
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spliced messenger RNA

>Gchil3134.t1 ID=Gchil3134.t1|Name=Gchil3134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00004382_pilon:391601..392728+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACCCACCCCAATCAACTGAAACCGCGGCCGCTCCATTCTGCTGT
TGCCCGAAAATCTCTGATTGCCATTCTCCATCAACTCACAGCCATGCCCT
TTGTGAACGCCCTTCTTTTTCTGGCATTTTTTACCTCACACACCGCTCTC
GTTGCGGCGTGGAACCCTTTAGACATCATCAAGGACTACTTCCCATGCAC
GGTGCTTCGTCTCTCGCGTCAGCAATGGACCACAACGTACAATGAACCGT
CCTTAATCCCGCTATCCGAACGAAATGTTACCCAGAAGCAAATCAAAGGG
CTCGTTGCCGGTGTGAACTTTACTTGCGGTAGCACCATTCCCGTCACCGG
TCATACTCTTCTTTGCTCAACACAAGGCTTTTCGTTTGAGCCGCCACGCT
CTGCTCGGTACGCAGTTGTGTTTGTGCATGGCATTACATCACCTGGGAGA
GAGGCTTCAACCATATCAGTGTTGGCACGGCTGCTGGCAACTGACCCCGA
CCTCGGTTCGCAGATCCGCATTGACTTTCCTTTGTACCAGCTCCGTCGTC
TCACCTTTTCGGAATTTAGGTCTCCACCTGTAGAGGTAGCACGTTCCTAC
TTCGATCTTTTAGCACCACCGAAGTCCACTGCTCTACAGGATTTAATTGC
AGCTGATACTGATCGACTGGGTCTGTATCGTGCGACCCAATTCATTGACT
TCACCGTTCGTTCGCAGATGTGCAAAGCCTCTATCCCAACGTCGCGCGTA
GCGATTTTGGGACACTCTCTCGGCGGCTTTGCCACGCTGGAGACTGTTAT
GTCCACAGGACTAGACCTGGCCGGTGCGATTGTTGTCTCCGGTAGCTTGC
CGAGGGCTGGCGATTATATTCAAGCCAACGTGCAGGCGTTCAATACAATG
CCCAGACAGTTCAATATCACCATGATCCACGGAACAAATGACGACATTGT
TCCATTCGTATTTGCCAACATCTCAGCTCAGATATTGAAACCGGTGTTCA
ATTCACTTGGAGGAGGTTTCAATTTTAAACCGCTCCAGGGACTGGATCAC
TTCAACACGTTGTTCCGTGATCGGCAGTTCTACGACCTCGCTCAAAGGGC
TCTACGACAGGCGTTTATCCGTTCGTAA
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protein sequence of Gchil3134.t1

>Gchil3134.t1 ID=Gchil3134.t1|Name=Gchil3134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MCTHPNQLKPRPLHSAVARKSLIAILHQLTAMPFVNALLFLAFFTSHTAL
VAAWNPLDIIKDYFPCTVLRLSRQQWTTTYNEPSLIPLSERNVTQKQIKG
LVAGVNFTCGSTIPVTGHTLLCSTQGFSFEPPRSARYAVVFVHGITSPGR
EASTISVLARLLATDPDLGSQIRIDFPLYQLRRLTFSEFRSPPVEVARSY
FDLLAPPKSTALQDLIAADTDRLGLYRATQFIDFTVRSQMCKASIPTSRV
AILGHSLGGFATLETVMSTGLDLAGAIVVSGSLPRAGDYIQANVQAFNTM
PRQFNITMIHGTNDDIVPFVFANISAQILKPVFNSLGGGFNFKPLQGLDH
FNTLFRDRQFYDLAQRALRQAFIRS*
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mRNA from alignment at tig00004382_pilon:391601..392728+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3134.t1 ID=Gchil3134.t1|Name=Gchil3134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00004382_pilon:391601..392728+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCACCCACCCCAATCAACTGAAACCGCGGCCGCTCCATTCTGCTGT
TGCCCGAAAATCTCTGATTGCCATTCTCCATCAACTCACAGCCATGCCCT
TTGTGAACGCCCTTCTTTTTCTGGCATTTTTTACCTCACACACCGCTCTC
GTTGCGGCGTGGAACCCTTTAGACATCATCAAGGACTACTTCCCATGCAC
GGTGCTTCGTCTCTCGCGTCAGCAATGGACCACAACGTACAATGAACCGT
CCTTAATCCCGCTATCCGAACGAAATGTTACCCAGAAGCAAATCAAAGGG
CTCGTTGCCGGTGTGAACTTTACTTGCGGTAGCACCATTCCCGTCACCGG
TCATACTCTTCTTTGCTCAACACAAGGCTTTTCGTTTGAGCCGCCACGCT
CTGCTCGGTACGCAGTTGTGTTTGTGCATGGCATTACATCACCTGGGAGA
GAGGCTTCAACCATATCAGTGTTGGCACGGCTGCTGGCAACTGACCCCGA
CCTCGGTTCGCAGATCCGCATTGACTTTCCTTTGTACCAGCTCCGTCGTC
TCACCTTTTCGGAATTTAGGTCTCCACCTGTAGAGGTAGCACGTTCCTAC
TTCGATCTTTTAGCACCACCGAAGTCCACTGCTCTACAGGATTTAATTGC
AGCTGATACTGATCGACTGGGTCTGTATCGTGCGACCCAATTCATTGACT
TCACCGTTCGTTCGCAGATGTGCAAAGCCTCTATCCCAACGTCGCGCGTA
GCGATTTTGGGACACTCTCTCGGCGGCTTTGCCACGCTGGAGACTGTTAT
GTCCACAGGACTAGACCTGGCCGGTGCGATTGTTGTCTCCGGTAGCTTGC
CGAGGGCTGGCGATTATATTCAAGCCAACGTGCAGGCGTTCAATACAATG
CCCAGACAGTTCAATATCACCATGATCCACGGAACAAATGACGACATTGT
TCCATTCGTATTTGCCAACATCTCAGCTCAGATATTGAAACCGGTGTTCA
ATTCACTTGGAGGAGGTTTCAATTTTAAACCGCTCCAGGGACTGGATCAC
TTCAACACGTTGTTCCGTGATCGGCAGTTCTACGACCTCGCTCAAAGGGC
TCTACGACAGGCGTTTATCCGTTCGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:391601..392728+

>Gchil3134.t1 ID=Gchil3134.t1|Name=Gchil3134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00004382_pilon:391601..392728+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCACCCACCCCAATCAACTGAAACCGCGGCCGCTCCATTCTGCTGT
TGCCCGAAAATCTCTGATTGCCATTCTCCATCAACTCACAGCCATGCCCT
TTGTGAACGCCCTTCTTTTTCTGGCATTTTTTACCTCACACACCGCTCTC
GTTGCGGCGTGGAACCCTTTAGACATCATCAAGGACTACTTCCCATGCAC
GGTGCTTCGTCTCTCGCGTCAGCAATGGACCACAACGTACAATGAACCGT
CCTTAATCCCGCTATCCGAACGAAATGTTACCCAGAAGCAAATCAAAGGG
CTCGTTGCCGGTGTGAACTTTACTTGCGGTAGCACCATTCCCGTCACCGG
TCATACTCTTCTTTGCTCAACACAAGGCTTTTCGTTTGAGCCGCCACGCT
CTGCTCGGTACGCAGTTGTGTTTGTGCATGGCATTACATCACCTGGGAGA
GAGGCTTCAACCATATCAGTGTTGGCACGGCTGCTGGCAACTGACCCCGA
CCTCGGTTCGCAGATCCGCATTGACTTTCCTTTGTACCAGCTCCGTCGTC
TCACCTTTTCGGAATTTAGGTCTCCACCTGTAGAGGTAGCACGTTCCTAC
TTCGATCTTTTAGCACCACCGAAGTCCACTGCTCTACAGGATTTAATTGC
AGCTGATACTGATCGACTGGGTCTGTATCGTGCGACCCAATTCATTGACT
TCACCGTTCGTTCGCAGATGTGCAAAGCCTCTATCCCAACGTCGCGCGTA
GCGATTTTGGGACACTCTCTCGGCGGCTTTGCCACGCTGGAGACTGTTAT
GTCCACAGGACTAGACCTGGCCGGTGCGATTGTTGTCTCCGGTAGCTTGC
CGAGGGCTGGCGATTATATTCAAGCCAACGTGCAGGCGTTCAATACAATG
CCCAGACAGTTCAATATCACCATGATCCACGGAACAAATGACGACATTGT
TCCATTCGTATTTGCCAACATCTCAGCTCAGATATTGAAACCGGTGTTCA
ATTCACTTGGAGGAGGTTTCAATTTTAAACCGCTCCAGGGACTGGATCAC
TTCAACACGTTGTTCCGTGATCGGCAGTTCTACGACCTCGCTCAAAGGGC
TCTACGACAGGCGTTTATCCGTTCGTAA
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