Gchil3133.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3133.t1
Unique NameGchil3133.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:390375..391049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LJJ3
PFAMsDUF1499
Max annot lvl2759|Eukaryota
Evalue7.14e-20
EggNOG OGs2E3E0@1|root,2SAH2@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3133Gchil3133Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 390375..391049 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3133.t1.stop1Gchil3133.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 390375..390377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3133.t1.CDS1Gchil3133.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 390375..391049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3133.t1.exon1Gchil3133.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 390375..391049 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3133.t1.start1Gchil3133.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 391047..391049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3133.t1Gchil3133.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 390375..391049 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3133.t1 ID=Gchil3133.t1|Name=Gchil3133.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=225bp
MPPSLSSAQAYIPQWTGFSSALQWPANLCRLTTCVASTLVAVAVATHPLH
ATALGEDVLRDGLLRTCEPPRISCIVSQHDVPPSFVEPFEYDPTTITPRQ
ALEAVRHAALQEKGADLIEETGKYLRFEFEMVGGVIDVAEFYFPPDDALV
HFRAERKDTAFDFASNRARLRRIAVRSRLTRLYVQRNRVRVFGLFESPFD
RFGPSVVDIDSIIENAPISSRPVR*
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spliced messenger RNA

>Gchil3133.t1 ID=Gchil3133.t1|Name=Gchil3133.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00004382_pilon:390375..391049- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCGTCGCTCTCGTCCGCTCAAGCCTATATTCCGCAATGGACGGG
CTTCTCCTCTGCGCTTCAATGGCCTGCCAATTTGTGCCGTTTAACTACAT
GCGTCGCCTCGACGCTAGTGGCCGTTGCAGTTGCGACGCATCCTCTTCAT
GCGACTGCCCTTGGTGAAGATGTGCTTCGCGACGGTTTGCTTCGCACATG
CGAGCCGCCTCGCATCTCTTGCATTGTGTCACAACATGATGTTCCCCCGT
CCTTCGTGGAGCCGTTTGAATATGATCCCACTACAATCACACCCCGCCAA
GCTTTGGAAGCTGTACGACACGCCGCTTTGCAGGAGAAAGGCGCGGATTT
AATTGAGGAGACAGGAAAATATTTGCGGTTCGAGTTCGAAATGGTTGGGG
GTGTAATAGATGTCGCCGAGTTCTACTTTCCGCCCGATGATGCCTTGGTT
CATTTCCGAGCGGAAAGAAAAGATACAGCATTCGACTTTGCCAGTAACCG
TGCACGGTTACGACGAATTGCTGTGCGGTCACGTCTTACGCGATTGTATG
TACAGAGGAATCGAGTGCGTGTGTTTGGTTTGTTTGAGAGTCCTTTTGAT
AGATTTGGACCTTCTGTTGTTGATATTGATTCCATAATCGAAAACGCCCC
TATTTCATCTAGGCCTGTTCGATGA
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protein sequence of Gchil3133.t1

>Gchil3133.t1 ID=Gchil3133.t1|Name=Gchil3133.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=225bp
MPPSLSSAQAYIPQWTGFSSALQWPANLCRLTTCVASTLVAVAVATHPLH
ATALGEDVLRDGLLRTCEPPRISCIVSQHDVPPSFVEPFEYDPTTITPRQ
ALEAVRHAALQEKGADLIEETGKYLRFEFEMVGGVIDVAEFYFPPDDALV
HFRAERKDTAFDFASNRARLRRIAVRSRLTRLYVQRNRVRVFGLFESPFD
RFGPSVVDIDSIIENAPISSRPVR*
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mRNA from alignment at tig00004382_pilon:390375..391049-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3133.t1 ID=Gchil3133.t1|Name=Gchil3133.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00004382_pilon:390375..391049- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCGTCGCTCTCGTCCGCTCAAGCCTATATTCCGCAATGGACGGG
CTTCTCCTCTGCGCTTCAATGGCCTGCCAATTTGTGCCGTTTAACTACAT
GCGTCGCCTCGACGCTAGTGGCCGTTGCAGTTGCGACGCATCCTCTTCAT
GCGACTGCCCTTGGTGAAGATGTGCTTCGCGACGGTTTGCTTCGCACATG
CGAGCCGCCTCGCATCTCTTGCATTGTGTCACAACATGATGTTCCCCCGT
CCTTCGTGGAGCCGTTTGAATATGATCCCACTACAATCACACCCCGCCAA
GCTTTGGAAGCTGTACGACACGCCGCTTTGCAGGAGAAAGGCGCGGATTT
AATTGAGGAGACAGGAAAATATTTGCGGTTCGAGTTCGAAATGGTTGGGG
GTGTAATAGATGTCGCCGAGTTCTACTTTCCGCCCGATGATGCCTTGGTT
CATTTCCGAGCGGAAAGAAAAGATACAGCATTCGACTTTGCCAGTAACCG
TGCACGGTTACGACGAATTGCTGTGCGGTCACGTCTTACGCGATTGTATG
TACAGAGGAATCGAGTGCGTGTGTTTGGTTTGTTTGAGAGTCCTTTTGAT
AGATTTGGACCTTCTGTTGTTGATATTGATTCCATAATCGAAAACGCCCC
TATTTCATCTAGGCCTGTTCGATGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:390375..391049-

>Gchil3133.t1 ID=Gchil3133.t1|Name=Gchil3133.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00004382_pilon:390375..391049- (Gracilaria chilensis NLEC103_M9 male)
ATGCCACCGTCGCTCTCGTCCGCTCAAGCCTATATTCCGCAATGGACGGG
CTTCTCCTCTGCGCTTCAATGGCCTGCCAATTTGTGCCGTTTAACTACAT
GCGTCGCCTCGACGCTAGTGGCCGTTGCAGTTGCGACGCATCCTCTTCAT
GCGACTGCCCTTGGTGAAGATGTGCTTCGCGACGGTTTGCTTCGCACATG
CGAGCCGCCTCGCATCTCTTGCATTGTGTCACAACATGATGTTCCCCCGT
CCTTCGTGGAGCCGTTTGAATATGATCCCACTACAATCACACCCCGCCAA
GCTTTGGAAGCTGTACGACACGCCGCTTTGCAGGAGAAAGGCGCGGATTT
AATTGAGGAGACAGGAAAATATTTGCGGTTCGAGTTCGAAATGGTTGGGG
GTGTAATAGATGTCGCCGAGTTCTACTTTCCGCCCGATGATGCCTTGGTT
CATTTCCGAGCGGAAAGAAAAGATACAGCATTCGACTTTGCCAGTAACCG
TGCACGGTTACGACGAATTGCTGTGCGGTCACGTCTTACGCGATTGTATG
TACAGAGGAATCGAGTGCGTGTGTTTGGTTTGTTTGAGAGTCCTTTTGAT
AGATTTGGACCTTCTGTTGTTGATATTGATTCCATAATCGAAAACGCCCC
TATTTCATCTAGGCCTGTTCGATGA
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