Gchil3131.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3131.t1
Unique Name	Gchil3131.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	562

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:343661..345346 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703804.1
Preferred name	GNL2
PFAMs	MMR_HSR1,NGP1NT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14537,ko:K16474
KEGG Pathway	ko03008,map03008
GOs	GO:0000054,GO:0000055,GO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue	7.03e-167
EggNOG OGs	COG1161@1\|root,KOG2423@2759\|Eukaryota
Description	GTP binding
COG category	K
BRITE	ko00000,ko00001,ko03009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3131	Gchil3131	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 343661..345346 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3131.t1.stop1	Gchil3131.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 343661..343663 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3131.t1.CDS1	Gchil3131.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 343661..345346 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3131.t1.exon1	Gchil3131.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 343661..345346 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3131.t1.start1	Gchil3131.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 345344..345346 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3131.t1	Gchil3131.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 343661..345346 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:343661..345346-
coding sequence from alignment at tig00004382_pilon:343661..345346-

mRNA sequence

>Gchil3131.t1 ID=Gchil3131.t1|Name=Gchil3131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=562bp
MPKVKPKLTAGVGGNLPRHAMDANRGNNKIGHGRDRATVRRIQMYKTKAH
KRDRNGRIIKDAGDLTSATPEVGAGRVAPNRKWFGNTRVVQQKDLNRFRD
AMTRAQADPFSVLLKQKKLPMTLVAEPQSESRALAGSQMGLLINEPFEQT
FSKKRRRKRPKLTASSYEQLLKNAEQNNKEYQDDLEKKEQLADEMARKAA
AEAPPDPDAKAGLRFDDLKNAQRERVFDKGQSKRIWAELHKVVDSSDVVI
QVLDARDPMGTRCMYLEKFLKRQCSHKHMILLLNKADLVPTWVSSAWLKL
LSTEYPTLVFHSSITNPFGKGSLINLLRQFKALHPEKKSISCGLVGYPNV
GKSSVINTLRGKKVSKVAPIPGETKVWQYVTMFRSIFLIDCPGVVHDSTR
NTQSEAILKGVVRIESLRGMAAEYIPALLERVNVKYIQRTYGIDSWERPD
DLLEKLARKTGKLLKGGEPDTNTVGRMMLSDFQRGKLPWFVPPASDVKEE
SDEGDQGQSPEAKANSDKVTGRNEQVCSNPDLDSANDTRESVKVVTVEHE
DIKHLKVSKRV*

spliced messenger RNA

>Gchil3131.t1 ID=Gchil3131.t1|Name=Gchil3131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00004382_pilon:343661..345346- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAAGTAAAGCCGAAGCTCACGGCCGGAGTGGGCGGCAATCTACC
ACGCCATGCCATGGATGCGAACCGCGGAAACAATAAAATCGGACATGGAA
GAGACAGAGCCACAGTCAGAAGAATTCAAATGTACAAAACAAAGGCACAT
AAACGAGACAGAAATGGAAGGATAATCAAAGACGCCGGTGACTTGACAAG
TGCAACGCCCGAGGTTGGTGCGGGTCGGGTCGCTCCAAACAGAAAGTGGT
TTGGAAATACTCGCGTTGTGCAACAAAAAGATTTAAATAGGTTCCGAGAC
GCTATGACCAGAGCTCAGGCTGACCCGTTTTCGGTACTTCTGAAACAGAA
GAAGCTGCCCATGACGCTTGTTGCCGAACCACAAAGCGAGAGTCGCGCGT
TGGCGGGATCTCAGATGGGGCTTTTGATAAACGAACCGTTTGAACAGACA
TTTTCAAAGAAGAGAAGAAGAAAAAGACCGAAACTGACTGCATCTTCGTA
CGAGCAATTGCTGAAGAATGCCGAGCAAAACAACAAGGAATATCAAGATG
ATTTGGAAAAAAAAGAACAGCTCGCAGATGAGATGGCAAGGAAAGCTGCT
GCAGAAGCGCCGCCAGACCCTGACGCGAAGGCTGGACTTCGCTTCGATGA
CTTGAAGAACGCGCAACGAGAACGTGTGTTTGACAAAGGACAGAGCAAGA
GAATATGGGCTGAACTGCACAAGGTTGTCGACTCGAGTGATGTAGTTATT
CAGGTCCTTGATGCGCGTGATCCCATGGGTACGCGCTGCATGTATCTTGA
GAAGTTCCTGAAACGACAGTGTTCTCACAAGCACATGATCTTGTTGCTCA
ACAAGGCCGATCTAGTACCTACCTGGGTTTCATCAGCTTGGCTGAAATTA
CTGAGCACAGAGTATCCTACATTGGTATTTCACTCTAGTATTACAAATCC
ATTTGGAAAGGGTTCGCTTATTAATCTTCTACGACAATTCAAGGCCCTTC
ACCCTGAGAAGAAGTCAATCTCATGCGGTTTGGTAGGATATCCAAATGTA
GGCAAGTCAAGTGTCATAAACACACTGAGGGGCAAAAAGGTTTCCAAAGT
TGCACCAATTCCAGGTGAAACCAAGGTGTGGCAGTATGTGACAATGTTCC
GCTCCATATTTCTCATTGACTGTCCTGGCGTGGTCCATGACTCAACAAGA
AATACTCAATCAGAAGCGATTCTGAAGGGGGTTGTTCGAATTGAATCTTT
GCGTGGTATGGCCGCAGAATACATTCCTGCTCTGCTGGAACGTGTGAATG
TAAAATACATTCAGCGAACATATGGAATTGATTCTTGGGAACGCCCAGAC
GATTTGCTGGAGAAGCTCGCTCGTAAAACGGGGAAGCTTTTGAAAGGGGG
CGAACCGGATACGAACACTGTAGGGAGAATGATGTTGAGCGATTTCCAGA
GGGGAAAACTTCCATGGTTTGTACCCCCTGCAAGCGACGTCAAAGAGGAG
TCAGACGAGGGAGATCAGGGACAGTCACCTGAAGCGAAAGCGAATAGTGA
TAAAGTCACGGGCCGGAATGAGCAGGTTTGTTCGAATCCCGACCTTGATT
CAGCTAATGATACCCGCGAGAGTGTCAAAGTTGTCACCGTCGAGCATGAA
GACATAAAACACTTGAAAGTTTCCAAAAGGGTATGA

protein sequence of Gchil3131.t1

>Gchil3131.t1 ID=Gchil3131.t1|Name=Gchil3131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=562bp
MPKVKPKLTAGVGGNLPRHAMDANRGNNKIGHGRDRATVRRIQMYKTKAH
KRDRNGRIIKDAGDLTSATPEVGAGRVAPNRKWFGNTRVVQQKDLNRFRD
AMTRAQADPFSVLLKQKKLPMTLVAEPQSESRALAGSQMGLLINEPFEQT
FSKKRRRKRPKLTASSYEQLLKNAEQNNKEYQDDLEKKEQLADEMARKAA
AEAPPDPDAKAGLRFDDLKNAQRERVFDKGQSKRIWAELHKVVDSSDVVI
QVLDARDPMGTRCMYLEKFLKRQCSHKHMILLLNKADLVPTWVSSAWLKL
LSTEYPTLVFHSSITNPFGKGSLINLLRQFKALHPEKKSISCGLVGYPNV
GKSSVINTLRGKKVSKVAPIPGETKVWQYVTMFRSIFLIDCPGVVHDSTR
NTQSEAILKGVVRIESLRGMAAEYIPALLERVNVKYIQRTYGIDSWERPD
DLLEKLARKTGKLLKGGEPDTNTVGRMMLSDFQRGKLPWFVPPASDVKEE
SDEGDQGQSPEAKANSDKVTGRNEQVCSNPDLDSANDTRESVKVVTVEHE
DIKHLKVSKRV*

mRNA from alignment at tig00004382_pilon:343661..345346-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3131.t1 ID=Gchil3131.t1|Name=Gchil3131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00004382_pilon:343661..345346- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAAAGTAAAGCCGAAGCTCACGGCCGGAGTGGGCGGCAATCTACC
ACGCCATGCCATGGATGCGAACCGCGGAAACAATAAAATCGGACATGGAA
GAGACAGAGCCACAGTCAGAAGAATTCAAATGTACAAAACAAAGGCACAT
AAACGAGACAGAAATGGAAGGATAATCAAAGACGCCGGTGACTTGACAAG
TGCAACGCCCGAGGTTGGTGCGGGTCGGGTCGCTCCAAACAGAAAGTGGT
TTGGAAATACTCGCGTTGTGCAACAAAAAGATTTAAATAGGTTCCGAGAC
GCTATGACCAGAGCTCAGGCTGACCCGTTTTCGGTACTTCTGAAACAGAA
GAAGCTGCCCATGACGCTTGTTGCCGAACCACAAAGCGAGAGTCGCGCGT
TGGCGGGATCTCAGATGGGGCTTTTGATAAACGAACCGTTTGAACAGACA
TTTTCAAAGAAGAGAAGAAGAAAAAGACCGAAACTGACTGCATCTTCGTA
CGAGCAATTGCTGAAGAATGCCGAGCAAAACAACAAGGAATATCAAGATG
ATTTGGAAAAAAAAGAACAGCTCGCAGATGAGATGGCAAGGAAAGCTGCT
GCAGAAGCGCCGCCAGACCCTGACGCGAAGGCTGGACTTCGCTTCGATGA
CTTGAAGAACGCGCAACGAGAACGTGTGTTTGACAAAGGACAGAGCAAGA
GAATATGGGCTGAACTGCACAAGGTTGTCGACTCGAGTGATGTAGTTATT
CAGGTCCTTGATGCGCGTGATCCCATGGGTACGCGCTGCATGTATCTTGA
GAAGTTCCTGAAACGACAGTGTTCTCACAAGCACATGATCTTGTTGCTCA
ACAAGGCCGATCTAGTACCTACCTGGGTTTCATCAGCTTGGCTGAAATTA
CTGAGCACAGAGTATCCTACATTGGTATTTCACTCTAGTATTACAAATCC
ATTTGGAAAGGGTTCGCTTATTAATCTTCTACGACAATTCAAGGCCCTTC
ACCCTGAGAAGAAGTCAATCTCATGCGGTTTGGTAGGATATCCAAATGTA
GGCAAGTCAAGTGTCATAAACACACTGAGGGGCAAAAAGGTTTCCAAAGT
TGCACCAATTCCAGGTGAAACCAAGGTGTGGCAGTATGTGACAATGTTCC
GCTCCATATTTCTCATTGACTGTCCTGGCGTGGTCCATGACTCAACAAGA
AATACTCAATCAGAAGCGATTCTGAAGGGGGTTGTTCGAATTGAATCTTT
GCGTGGTATGGCCGCAGAATACATTCCTGCTCTGCTGGAACGTGTGAATG
TAAAATACATTCAGCGAACATATGGAATTGATTCTTGGGAACGCCCAGAC
GATTTGCTGGAGAAGCTCGCTCGTAAAACGGGGAAGCTTTTGAAAGGGGG
CGAACCGGATACGAACACTGTAGGGAGAATGATGTTGAGCGATTTCCAGA
GGGGAAAACTTCCATGGTTTGTACCCCCTGCAAGCGACGTCAAAGAGGAG
TCAGACGAGGGAGATCAGGGACAGTCACCTGAAGCGAAAGCGAATAGTGA
TAAAGTCACGGGCCGGAATGAGCAGGTTTGTTCGAATCCCGACCTTGATT
CAGCTAATGATACCCGCGAGAGTGTCAAAGTTGTCACCGTCGAGCATGAA
GACATAAAACACTTGAAAGTTTCCAAAAGGGTATGA

Coding sequence (CDS) from alignment at tig00004382_pilon:343661..345346-

>Gchil3131.t1 ID=Gchil3131.t1|Name=Gchil3131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00004382_pilon:343661..345346- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAAAGTAAAGCCGAAGCTCACGGCCGGAGTGGGCGGCAATCTACC
ACGCCATGCCATGGATGCGAACCGCGGAAACAATAAAATCGGACATGGAA
GAGACAGAGCCACAGTCAGAAGAATTCAAATGTACAAAACAAAGGCACAT
AAACGAGACAGAAATGGAAGGATAATCAAAGACGCCGGTGACTTGACAAG
TGCAACGCCCGAGGTTGGTGCGGGTCGGGTCGCTCCAAACAGAAAGTGGT
TTGGAAATACTCGCGTTGTGCAACAAAAAGATTTAAATAGGTTCCGAGAC
GCTATGACCAGAGCTCAGGCTGACCCGTTTTCGGTACTTCTGAAACAGAA
GAAGCTGCCCATGACGCTTGTTGCCGAACCACAAAGCGAGAGTCGCGCGT
TGGCGGGATCTCAGATGGGGCTTTTGATAAACGAACCGTTTGAACAGACA
TTTTCAAAGAAGAGAAGAAGAAAAAGACCGAAACTGACTGCATCTTCGTA
CGAGCAATTGCTGAAGAATGCCGAGCAAAACAACAAGGAATATCAAGATG
ATTTGGAAAAAAAAGAACAGCTCGCAGATGAGATGGCAAGGAAAGCTGCT
GCAGAAGCGCCGCCAGACCCTGACGCGAAGGCTGGACTTCGCTTCGATGA
CTTGAAGAACGCGCAACGAGAACGTGTGTTTGACAAAGGACAGAGCAAGA
GAATATGGGCTGAACTGCACAAGGTTGTCGACTCGAGTGATGTAGTTATT
CAGGTCCTTGATGCGCGTGATCCCATGGGTACGCGCTGCATGTATCTTGA
GAAGTTCCTGAAACGACAGTGTTCTCACAAGCACATGATCTTGTTGCTCA
ACAAGGCCGATCTAGTACCTACCTGGGTTTCATCAGCTTGGCTGAAATTA
CTGAGCACAGAGTATCCTACATTGGTATTTCACTCTAGTATTACAAATCC
ATTTGGAAAGGGTTCGCTTATTAATCTTCTACGACAATTCAAGGCCCTTC
ACCCTGAGAAGAAGTCAATCTCATGCGGTTTGGTAGGATATCCAAATGTA
GGCAAGTCAAGTGTCATAAACACACTGAGGGGCAAAAAGGTTTCCAAAGT
TGCACCAATTCCAGGTGAAACCAAGGTGTGGCAGTATGTGACAATGTTCC
GCTCCATATTTCTCATTGACTGTCCTGGCGTGGTCCATGACTCAACAAGA
AATACTCAATCAGAAGCGATTCTGAAGGGGGTTGTTCGAATTGAATCTTT
GCGTGGTATGGCCGCAGAATACATTCCTGCTCTGCTGGAACGTGTGAATG
TAAAATACATTCAGCGAACATATGGAATTGATTCTTGGGAACGCCCAGAC
GATTTGCTGGAGAAGCTCGCTCGTAAAACGGGGAAGCTTTTGAAAGGGGG
CGAACCGGATACGAACACTGTAGGGAGAATGATGTTGAGCGATTTCCAGA
GGGGAAAACTTCCATGGTTTGTACCCCCTGCAAGCGACGTCAAAGAGGAG
TCAGACGAGGGAGATCAGGGACAGTCACCTGAAGCGAAAGCGAATAGTGA
TAAAGTCACGGGCCGGAATGAGCAGGTTTGTTCGAATCCCGACCTTGATT
CAGCTAATGATACCCGCGAGAGTGTCAAAGTTGTCACCGTCGAGCATGAA
GACATAAAACACTTGAAAGTTTCCAAAAGGGTATGA