Gchil3127.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3127.t1
Unique NameGchil3127.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:313241..314230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3127Gchil3127Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 313241..314230 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3127.t1.stop1Gchil3127.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 313241..313243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3127.t1.CDS1Gchil3127.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 313241..314230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3127.t1.exon1Gchil3127.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 313241..314230 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3127.t1.start1Gchil3127.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 314228..314230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3127.t1Gchil3127.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 313241..314230 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3127.t1 ID=Gchil3127.t1|Name=Gchil3127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=330bp
MAVVSPSDVWLPAGFAAPLWVLAFARVLSLKSGLFRLAAVRLVGASLCLL
LFVHALQPARGDVRRVLHGVEPMRVIVRQIEQPVLSPLPQRPSPSPSSQP
SVPSPVPATPMQQPVQQPVQQPVTPITGAGTVPVQTDFELTSIPALSECG
APLTRMQIVLLLELCFEILFLFLRCFAEQDDDDDTSTSGTSDTNSSIQLN
MRAFILLRAIYTVPVLIVNTSIYWIGGGPTGACLSNYPELQIPFTHLLFY
LLFCFIIIIMGLIRIDQWDPSTTDTSYRSRTFRSDGPPTRTTSYFRYSRP
ARRNRSHTSSTSYTEPKFKCDLGCCALNI*
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spliced messenger RNA

>Gchil3127.t1 ID=Gchil3127.t1|Name=Gchil3127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00004382_pilon:313241..314230- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTGGTGTCTCCGTCCGATGTGTGGCTTCCTGCGGGCTTCGCCGC
TCCGCTGTGGGTGCTGGCTTTTGCGAGGGTGCTTTCGCTCAAGAGCGGTC
TCTTCCGACTCGCGGCTGTTCGACTGGTGGGCGCTTCTTTGTGTTTGTTG
CTGTTTGTTCATGCGTTGCAGCCGGCTCGTGGAGACGTGCGTCGTGTGCT
GCACGGCGTTGAACCCATGCGCGTCATTGTTAGACAGATAGAGCAGCCGG
TGCTGTCTCCTTTGCCGCAGAGACCATCGCCGTCGCCAAGCTCTCAGCCC
TCGGTACCTTCTCCAGTACCTGCTACGCCGATGCAGCAGCCGGTGCAGCA
GCCGGTTCAACAGCCCGTCACTCCCATCACGGGCGCAGGCACTGTTCCGG
TGCAAACGGATTTCGAACTCACTTCAATTCCAGCCTTGTCGGAATGTGGC
GCCCCTCTCACCCGCATGCAGATTGTGTTGCTTTTGGAACTGTGCTTTGA
GATTTTGTTCTTGTTTCTTAGATGCTTCGCCGAACAGGACGATGATGATG
ACACTAGCACCTCGGGCACTAGTGATACCAATTCCTCTATTCAGCTTAAT
ATGCGAGCATTTATTCTTCTTCGAGCTATTTACACCGTGCCGGTTCTCAT
CGTCAATACCAGTATCTATTGGATTGGTGGCGGGCCCACTGGAGCTTGTC
TGTCCAACTATCCCGAGTTGCAAATTCCTTTTACCCATCTTTTATTCTAT
TTGCTTTTTTGTTTCATTATTATCATCATGGGTTTGATTCGTATTGATCA
GTGGGATCCGAGCACAACTGACACCTCGTATCGTTCGCGTACTTTTCGCT
CCGATGGACCTCCCACCCGCACAACAAGTTATTTTCGCTATTCAAGGCCG
GCCAGGCGAAATCGAAGTCATACCTCTTCCACAAGCTACACAGAGCCCAA
GTTCAAGTGCGATCTCGGTTGCTGTGCGCTAAACATTTAG
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protein sequence of Gchil3127.t1

>Gchil3127.t1 ID=Gchil3127.t1|Name=Gchil3127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=330bp
MAVVSPSDVWLPAGFAAPLWVLAFARVLSLKSGLFRLAAVRLVGASLCLL
LFVHALQPARGDVRRVLHGVEPMRVIVRQIEQPVLSPLPQRPSPSPSSQP
SVPSPVPATPMQQPVQQPVQQPVTPITGAGTVPVQTDFELTSIPALSECG
APLTRMQIVLLLELCFEILFLFLRCFAEQDDDDDTSTSGTSDTNSSIQLN
MRAFILLRAIYTVPVLIVNTSIYWIGGGPTGACLSNYPELQIPFTHLLFY
LLFCFIIIIMGLIRIDQWDPSTTDTSYRSRTFRSDGPPTRTTSYFRYSRP
ARRNRSHTSSTSYTEPKFKCDLGCCALNI*
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mRNA from alignment at tig00004382_pilon:313241..314230-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3127.t1 ID=Gchil3127.t1|Name=Gchil3127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00004382_pilon:313241..314230- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTGGTGTCTCCGTCCGATGTGTGGCTTCCTGCGGGCTTCGCCGC
TCCGCTGTGGGTGCTGGCTTTTGCGAGGGTGCTTTCGCTCAAGAGCGGTC
TCTTCCGACTCGCGGCTGTTCGACTGGTGGGCGCTTCTTTGTGTTTGTTG
CTGTTTGTTCATGCGTTGCAGCCGGCTCGTGGAGACGTGCGTCGTGTGCT
GCACGGCGTTGAACCCATGCGCGTCATTGTTAGACAGATAGAGCAGCCGG
TGCTGTCTCCTTTGCCGCAGAGACCATCGCCGTCGCCAAGCTCTCAGCCC
TCGGTACCTTCTCCAGTACCTGCTACGCCGATGCAGCAGCCGGTGCAGCA
GCCGGTTCAACAGCCCGTCACTCCCATCACGGGCGCAGGCACTGTTCCGG
TGCAAACGGATTTCGAACTCACTTCAATTCCAGCCTTGTCGGAATGTGGC
GCCCCTCTCACCCGCATGCAGATTGTGTTGCTTTTGGAACTGTGCTTTGA
GATTTTGTTCTTGTTTCTTAGATGCTTCGCCGAACAGGACGATGATGATG
ACACTAGCACCTCGGGCACTAGTGATACCAATTCCTCTATTCAGCTTAAT
ATGCGAGCATTTATTCTTCTTCGAGCTATTTACACCGTGCCGGTTCTCAT
CGTCAATACCAGTATCTATTGGATTGGTGGCGGGCCCACTGGAGCTTGTC
TGTCCAACTATCCCGAGTTGCAAATTCCTTTTACCCATCTTTTATTCTAT
TTGCTTTTTTGTTTCATTATTATCATCATGGGTTTGATTCGTATTGATCA
GTGGGATCCGAGCACAACTGACACCTCGTATCGTTCGCGTACTTTTCGCT
CCGATGGACCTCCCACCCGCACAACAAGTTATTTTCGCTATTCAAGGCCG
GCCAGGCGAAATCGAAGTCATACCTCTTCCACAAGCTACACAGAGCCCAA
GTTCAAGTGCGATCTCGGTTGCTGTGCGCTAAACATTTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:313241..314230-

>Gchil3127.t1 ID=Gchil3127.t1|Name=Gchil3127.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00004382_pilon:313241..314230- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTGGTGTCTCCGTCCGATGTGTGGCTTCCTGCGGGCTTCGCCGC
TCCGCTGTGGGTGCTGGCTTTTGCGAGGGTGCTTTCGCTCAAGAGCGGTC
TCTTCCGACTCGCGGCTGTTCGACTGGTGGGCGCTTCTTTGTGTTTGTTG
CTGTTTGTTCATGCGTTGCAGCCGGCTCGTGGAGACGTGCGTCGTGTGCT
GCACGGCGTTGAACCCATGCGCGTCATTGTTAGACAGATAGAGCAGCCGG
TGCTGTCTCCTTTGCCGCAGAGACCATCGCCGTCGCCAAGCTCTCAGCCC
TCGGTACCTTCTCCAGTACCTGCTACGCCGATGCAGCAGCCGGTGCAGCA
GCCGGTTCAACAGCCCGTCACTCCCATCACGGGCGCAGGCACTGTTCCGG
TGCAAACGGATTTCGAACTCACTTCAATTCCAGCCTTGTCGGAATGTGGC
GCCCCTCTCACCCGCATGCAGATTGTGTTGCTTTTGGAACTGTGCTTTGA
GATTTTGTTCTTGTTTCTTAGATGCTTCGCCGAACAGGACGATGATGATG
ACACTAGCACCTCGGGCACTAGTGATACCAATTCCTCTATTCAGCTTAAT
ATGCGAGCATTTATTCTTCTTCGAGCTATTTACACCGTGCCGGTTCTCAT
CGTCAATACCAGTATCTATTGGATTGGTGGCGGGCCCACTGGAGCTTGTC
TGTCCAACTATCCCGAGTTGCAAATTCCTTTTACCCATCTTTTATTCTAT
TTGCTTTTTTGTTTCATTATTATCATCATGGGTTTGATTCGTATTGATCA
GTGGGATCCGAGCACAACTGACACCTCGTATCGTTCGCGTACTTTTCGCT
CCGATGGACCTCCCACCCGCACAACAAGTTATTTTCGCTATTCAAGGCCG
GCCAGGCGAAATCGAAGTCATACCTCTTCCACAAGCTACACAGAGCCCAA
GTTCAAGTGCGATCTCGGTTGCTGTGCGCTAAACATTTAG
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