Gchil3126.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3126.t1
Unique Name	Gchil3126.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	702

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:309792..311897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709134.1
PFAMs	Ank_2,Asparaginase,Pkinase,Pkinase_Tyr
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00010,RC02798
KEGG ko	ko:K01424,ko:K13278
KEGG Reaction	R00485
KEGG Pathway	ko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110
Evalue	1.4e-63
EggNOG OGs	COG0252@1\|root,COG0515@1\|root,KOG0192@2759\|Eukaryota,KOG0503@2759\|Eukaryota
EC	3.1.1.47,3.1.1.5,3.5.1.1
Description	asparagine catabolic process
COG category	EJ
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3126	Gchil3126	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 309792..311897 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3126.t1.start1	Gchil3126.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 309792..309794 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3126.t1.CDS1	Gchil3126.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 309792..311897 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3126.t1.exon1	Gchil3126.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 309792..311897 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3126.t1.stop1	Gchil3126.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 311895..311897 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3126.t1	Gchil3126.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 309792..311897 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:309792..311897+
coding sequence from alignment at tig00004382_pilon:309792..311897+

mRNA sequence

>Gchil3126.t1 ID=Gchil3126.t1|Name=Gchil3126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp
MWPFRISNRSKLRPASSIAFCAASAVALTPPAELNLLRSRTLNERQISLS
TLKRLLQSLQIDDEHFTNALFQLADVQNAGHVHAHHLLIVYSLLRRLAFA
QPELLRFSLQEVVYFIFTSAAGSHTATYVSWAQWLAFASKFGEEVGGSDS
LPCKETQSQLRSAWRRVSALAAPVSFPKFVGVLRNCDGGLLLNIRAMAYL
FTSSVVEVAHSCHEVPRWNEPFEESCFLSQYVTHAIATRVNAYEDGSHNE
STGSHEMESRRYRQLLSNGDVRRVGIPELKPLPVPASLNHSIDEGSDDYD
RPSNAPSERRTDPSIQKKPFSFPQSRSAAIASKALALSATTVCRSSRSTV
KSPFHIDFSSITLGQKFGSGAYGDVYRGTFLMTPVAVKVFHINVENNAHQ
TENNELTRTLTHMSTINKIQRFASLKSQNKYKDFVREVEMMSVVRHPNLV
LYMGACGDPCTPLCIISELFTGGSLYEYLHGDPGHCPDLYCAVSFALSIA
RGMFYLHASRPSILHRDLKSSNVLLSDRKGKDGIPRVVICDFGESQLFGH
HEDFELGTASYMSPNVISHEKYEERDDTYSFGILLHEIFTGTVPFEGLTP
TQVMFQVVHEGLRPSCDTDSAIPTSIKQLMEDCWHCKKSERPLFHSIISR
LDSFEASLNQEREENRSPLLTSVPRDLKGLLPLDNVELIKATSPASSAST
S*

spliced messenger RNA

>Gchil3126.t1 ID=Gchil3126.t1|Name=Gchil3126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2106bp|location=Sequence derived from alignment at tig00004382_pilon:309792..311897+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCCATTTCGTATTTCAAATCGCTCCAAGCTTCGTCCTGCTTCTAG
CATAGCATTCTGCGCTGCATCTGCTGTTGCGCTTACTCCACCAGCGGAAC
TCAATCTCCTTCGCTCCCGTACTTTGAACGAACGACAAATTTCCCTCTCG
ACACTCAAAAGATTGCTACAATCGCTCCAAATCGACGATGAACACTTTAC
CAACGCCTTGTTTCAACTGGCAGATGTTCAAAACGCTGGTCATGTCCATG
CACATCATCTATTAATCGTGTACTCTTTGTTACGGCGTCTCGCATTCGCG
CAACCTGAACTCCTTCGCTTTTCTTTGCAGGAAGTTGTTTACTTCATTTT
CACTTCTGCTGCTGGTTCCCATACTGCCACATATGTCTCATGGGCGCAGT
GGTTGGCGTTTGCGTCAAAGTTTGGAGAGGAAGTTGGCGGGTCTGATTCG
TTGCCATGTAAAGAAACGCAAAGCCAGCTCCGAAGCGCATGGCGTCGTGT
GAGTGCGCTTGCCGCTCCGGTCTCGTTTCCGAAATTCGTTGGTGTGCTCC
GCAACTGCGATGGTGGCTTACTCCTTAACATTCGGGCTATGGCATATCTC
TTTACGTCATCTGTGGTTGAAGTAGCTCATTCTTGTCATGAAGTACCTAG
GTGGAATGAGCCATTCGAAGAGAGTTGCTTTTTAAGCCAGTACGTTACTC
ATGCGATTGCAACGCGTGTAAATGCATACGAGGACGGGAGCCATAACGAG
TCTACCGGTTCCCATGAAATGGAATCACGGCGATATCGGCAATTGTTATC
AAATGGTGATGTACGAAGAGTAGGGATTCCTGAACTAAAGCCTTTACCAG
TACCCGCATCCTTGAATCACTCCATTGACGAGGGAAGTGACGATTACGAC
CGACCGTCGAATGCTCCCTCTGAGAGGCGTACGGATCCTTCCATTCAAAA
GAAGCCGTTCTCCTTTCCACAAAGTCGATCTGCTGCTATTGCATCGAAAG
CTCTGGCGTTGTCTGCTACAACTGTGTGTCGTTCCAGTCGTTCTACGGTC
AAGTCGCCTTTCCACATAGATTTTTCCTCAATCACACTCGGTCAGAAGTT
TGGATCAGGTGCGTATGGAGACGTATACAGAGGTACTTTTCTGATGACTC
CGGTTGCCGTCAAGGTTTTTCATATAAACGTCGAGAATAATGCCCACCAG
ACGGAGAACAACGAACTCACACGAACTCTTACTCATATGTCCACAATCAA
CAAGATACAGAGGTTTGCGAGTCTAAAATCTCAAAACAAGTACAAGGACT
TTGTGCGAGAGGTGGAAATGATGAGTGTTGTTCGTCATCCGAACTTAGTT
CTGTATATGGGGGCATGTGGTGATCCATGCACGCCATTGTGTATAATCTC
GGAGCTATTTACCGGCGGCTCTCTGTACGAATACTTGCATGGTGACCCTG
GGCATTGCCCAGATCTGTATTGTGCTGTTAGTTTCGCACTTAGCATTGCT
CGTGGCATGTTCTACCTGCACGCAAGCCGCCCAAGCATTCTTCATCGAGA
TTTGAAGTCATCCAATGTGTTGCTTAGCGATAGGAAGGGTAAGGATGGAA
TACCGCGGGTTGTGATTTGTGATTTCGGTGAAAGTCAGTTATTTGGTCAT
CACGAAGATTTCGAGTTAGGCACTGCTTCCTACATGTCTCCAAACGTTAT
CAGTCACGAAAAATACGAGGAAAGAGATGACACATACAGTTTCGGAATTT
TGCTGCATGAAATATTTACCGGTACTGTTCCTTTTGAGGGTCTGACTCCA
ACACAGGTCATGTTCCAAGTCGTACATGAAGGTTTACGACCATCGTGTGA
CACAGACAGTGCAATACCGACTTCAATTAAGCAGCTGATGGAAGATTGCT
GGCATTGCAAAAAGTCTGAAAGACCCCTATTCCATTCCATTATTTCAAGA
CTTGATTCTTTTGAAGCTAGTTTGAATCAGGAAAGAGAAGAAAATCGATC
TCCACTGCTGACAAGCGTTCCACGGGATTTGAAAGGCTTACTACCGTTGG
ACAATGTGGAGTTGATAAAGGCCACATCTCCTGCTTCTTCTGCATCGACT
AGCTAG

protein sequence of Gchil3126.t1

>Gchil3126.t1 ID=Gchil3126.t1|Name=Gchil3126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=702bp
MWPFRISNRSKLRPASSIAFCAASAVALTPPAELNLLRSRTLNERQISLS
TLKRLLQSLQIDDEHFTNALFQLADVQNAGHVHAHHLLIVYSLLRRLAFA
QPELLRFSLQEVVYFIFTSAAGSHTATYVSWAQWLAFASKFGEEVGGSDS
LPCKETQSQLRSAWRRVSALAAPVSFPKFVGVLRNCDGGLLLNIRAMAYL
FTSSVVEVAHSCHEVPRWNEPFEESCFLSQYVTHAIATRVNAYEDGSHNE
STGSHEMESRRYRQLLSNGDVRRVGIPELKPLPVPASLNHSIDEGSDDYD
RPSNAPSERRTDPSIQKKPFSFPQSRSAAIASKALALSATTVCRSSRSTV
KSPFHIDFSSITLGQKFGSGAYGDVYRGTFLMTPVAVKVFHINVENNAHQ
TENNELTRTLTHMSTINKIQRFASLKSQNKYKDFVREVEMMSVVRHPNLV
LYMGACGDPCTPLCIISELFTGGSLYEYLHGDPGHCPDLYCAVSFALSIA
RGMFYLHASRPSILHRDLKSSNVLLSDRKGKDGIPRVVICDFGESQLFGH
HEDFELGTASYMSPNVISHEKYEERDDTYSFGILLHEIFTGTVPFEGLTP
TQVMFQVVHEGLRPSCDTDSAIPTSIKQLMEDCWHCKKSERPLFHSIISR
LDSFEASLNQEREENRSPLLTSVPRDLKGLLPLDNVELIKATSPASSAST
S*

mRNA from alignment at tig00004382_pilon:309792..311897+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3126.t1 ID=Gchil3126.t1|Name=Gchil3126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2106bp|location=Sequence derived from alignment at tig00004382_pilon:309792..311897+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGCCATTTCGTATTTCAAATCGCTCCAAGCTTCGTCCTGCTTCTAG
CATAGCATTCTGCGCTGCATCTGCTGTTGCGCTTACTCCACCAGCGGAAC
TCAATCTCCTTCGCTCCCGTACTTTGAACGAACGACAAATTTCCCTCTCG
ACACTCAAAAGATTGCTACAATCGCTCCAAATCGACGATGAACACTTTAC
CAACGCCTTGTTTCAACTGGCAGATGTTCAAAACGCTGGTCATGTCCATG
CACATCATCTATTAATCGTGTACTCTTTGTTACGGCGTCTCGCATTCGCG
CAACCTGAACTCCTTCGCTTTTCTTTGCAGGAAGTTGTTTACTTCATTTT
CACTTCTGCTGCTGGTTCCCATACTGCCACATATGTCTCATGGGCGCAGT
GGTTGGCGTTTGCGTCAAAGTTTGGAGAGGAAGTTGGCGGGTCTGATTCG
TTGCCATGTAAAGAAACGCAAAGCCAGCTCCGAAGCGCATGGCGTCGTGT
GAGTGCGCTTGCCGCTCCGGTCTCGTTTCCGAAATTCGTTGGTGTGCTCC
GCAACTGCGATGGTGGCTTACTCCTTAACATTCGGGCTATGGCATATCTC
TTTACGTCATCTGTGGTTGAAGTAGCTCATTCTTGTCATGAAGTACCTAG
GTGGAATGAGCCATTCGAAGAGAGTTGCTTTTTAAGCCAGTACGTTACTC
ATGCGATTGCAACGCGTGTAAATGCATACGAGGACGGGAGCCATAACGAG
TCTACCGGTTCCCATGAAATGGAATCACGGCGATATCGGCAATTGTTATC
AAATGGTGATGTACGAAGAGTAGGGATTCCTGAACTAAAGCCTTTACCAG
TACCCGCATCCTTGAATCACTCCATTGACGAGGGAAGTGACGATTACGAC
CGACCGTCGAATGCTCCCTCTGAGAGGCGTACGGATCCTTCCATTCAAAA
GAAGCCGTTCTCCTTTCCACAAAGTCGATCTGCTGCTATTGCATCGAAAG
CTCTGGCGTTGTCTGCTACAACTGTGTGTCGTTCCAGTCGTTCTACGGTC
AAGTCGCCTTTCCACATAGATTTTTCCTCAATCACACTCGGTCAGAAGTT
TGGATCAGGTGCGTATGGAGACGTATACAGAGGTACTTTTCTGATGACTC
CGGTTGCCGTCAAGGTTTTTCATATAAACGTCGAGAATAATGCCCACCAG
ACGGAGAACAACGAACTCACACGAACTCTTACTCATATGTCCACAATCAA
CAAGATACAGAGGTTTGCGAGTCTAAAATCTCAAAACAAGTACAAGGACT
TTGTGCGAGAGGTGGAAATGATGAGTGTTGTTCGTCATCCGAACTTAGTT
CTGTATATGGGGGCATGTGGTGATCCATGCACGCCATTGTGTATAATCTC
GGAGCTATTTACCGGCGGCTCTCTGTACGAATACTTGCATGGTGACCCTG
GGCATTGCCCAGATCTGTATTGTGCTGTTAGTTTCGCACTTAGCATTGCT
CGTGGCATGTTCTACCTGCACGCAAGCCGCCCAAGCATTCTTCATCGAGA
TTTGAAGTCATCCAATGTGTTGCTTAGCGATAGGAAGGGTAAGGATGGAA
TACCGCGGGTTGTGATTTGTGATTTCGGTGAAAGTCAGTTATTTGGTCAT
CACGAAGATTTCGAGTTAGGCACTGCTTCCTACATGTCTCCAAACGTTAT
CAGTCACGAAAAATACGAGGAAAGAGATGACACATACAGTTTCGGAATTT
TGCTGCATGAAATATTTACCGGTACTGTTCCTTTTGAGGGTCTGACTCCA
ACACAGGTCATGTTCCAAGTCGTACATGAAGGTTTACGACCATCGTGTGA
CACAGACAGTGCAATACCGACTTCAATTAAGCAGCTGATGGAAGATTGCT
GGCATTGCAAAAAGTCTGAAAGACCCCTATTCCATTCCATTATTTCAAGA
CTTGATTCTTTTGAAGCTAGTTTGAATCAGGAAAGAGAAGAAAATCGATC
TCCACTGCTGACAAGCGTTCCACGGGATTTGAAAGGCTTACTACCGTTGG
ACAATGTGGAGTTGATAAAGGCCACATCTCCTGCTTCTTCTGCATCGACT
AGCTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:309792..311897+

>Gchil3126.t1 ID=Gchil3126.t1|Name=Gchil3126.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2106bp|location=Sequence derived from alignment at tig00004382_pilon:309792..311897+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGCCATTTCGTATTTCAAATCGCTCCAAGCTTCGTCCTGCTTCTAG
CATAGCATTCTGCGCTGCATCTGCTGTTGCGCTTACTCCACCAGCGGAAC
TCAATCTCCTTCGCTCCCGTACTTTGAACGAACGACAAATTTCCCTCTCG
ACACTCAAAAGATTGCTACAATCGCTCCAAATCGACGATGAACACTTTAC
CAACGCCTTGTTTCAACTGGCAGATGTTCAAAACGCTGGTCATGTCCATG
CACATCATCTATTAATCGTGTACTCTTTGTTACGGCGTCTCGCATTCGCG
CAACCTGAACTCCTTCGCTTTTCTTTGCAGGAAGTTGTTTACTTCATTTT
CACTTCTGCTGCTGGTTCCCATACTGCCACATATGTCTCATGGGCGCAGT
GGTTGGCGTTTGCGTCAAAGTTTGGAGAGGAAGTTGGCGGGTCTGATTCG
TTGCCATGTAAAGAAACGCAAAGCCAGCTCCGAAGCGCATGGCGTCGTGT
GAGTGCGCTTGCCGCTCCGGTCTCGTTTCCGAAATTCGTTGGTGTGCTCC
GCAACTGCGATGGTGGCTTACTCCTTAACATTCGGGCTATGGCATATCTC
TTTACGTCATCTGTGGTTGAAGTAGCTCATTCTTGTCATGAAGTACCTAG
GTGGAATGAGCCATTCGAAGAGAGTTGCTTTTTAAGCCAGTACGTTACTC
ATGCGATTGCAACGCGTGTAAATGCATACGAGGACGGGAGCCATAACGAG
TCTACCGGTTCCCATGAAATGGAATCACGGCGATATCGGCAATTGTTATC
AAATGGTGATGTACGAAGAGTAGGGATTCCTGAACTAAAGCCTTTACCAG
TACCCGCATCCTTGAATCACTCCATTGACGAGGGAAGTGACGATTACGAC
CGACCGTCGAATGCTCCCTCTGAGAGGCGTACGGATCCTTCCATTCAAAA
GAAGCCGTTCTCCTTTCCACAAAGTCGATCTGCTGCTATTGCATCGAAAG
CTCTGGCGTTGTCTGCTACAACTGTGTGTCGTTCCAGTCGTTCTACGGTC
AAGTCGCCTTTCCACATAGATTTTTCCTCAATCACACTCGGTCAGAAGTT
TGGATCAGGTGCGTATGGAGACGTATACAGAGGTACTTTTCTGATGACTC
CGGTTGCCGTCAAGGTTTTTCATATAAACGTCGAGAATAATGCCCACCAG
ACGGAGAACAACGAACTCACACGAACTCTTACTCATATGTCCACAATCAA
CAAGATACAGAGGTTTGCGAGTCTAAAATCTCAAAACAAGTACAAGGACT
TTGTGCGAGAGGTGGAAATGATGAGTGTTGTTCGTCATCCGAACTTAGTT
CTGTATATGGGGGCATGTGGTGATCCATGCACGCCATTGTGTATAATCTC
GGAGCTATTTACCGGCGGCTCTCTGTACGAATACTTGCATGGTGACCCTG
GGCATTGCCCAGATCTGTATTGTGCTGTTAGTTTCGCACTTAGCATTGCT
CGTGGCATGTTCTACCTGCACGCAAGCCGCCCAAGCATTCTTCATCGAGA
TTTGAAGTCATCCAATGTGTTGCTTAGCGATAGGAAGGGTAAGGATGGAA
TACCGCGGGTTGTGATTTGTGATTTCGGTGAAAGTCAGTTATTTGGTCAT
CACGAAGATTTCGAGTTAGGCACTGCTTCCTACATGTCTCCAAACGTTAT
CAGTCACGAAAAATACGAGGAAAGAGATGACACATACAGTTTCGGAATTT
TGCTGCATGAAATATTTACCGGTACTGTTCCTTTTGAGGGTCTGACTCCA
ACACAGGTCATGTTCCAAGTCGTACATGAAGGTTTACGACCATCGTGTGA
CACAGACAGTGCAATACCGACTTCAATTAAGCAGCTGATGGAAGATTGCT
GGCATTGCAAAAAGTCTGAAAGACCCCTATTCCATTCCATTATTTCAAGA
CTTGATTCTTTTGAAGCTAGTTTGAATCAGGAAAGAGAAGAAAATCGATC
TCCACTGCTGACAAGCGTTCCACGGGATTTGAAAGGCTTACTACCGTTGG
ACAATGTGGAGTTGATAAAGGCCACATCTCCTGCTTCTTCTGCATCGACT
AGCTAG