Gchil3104.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3104.t1
Unique Name	Gchil3104.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:94488..95321 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706864.1
Preferred name	NUDT22
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0008150,GO:0008768,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0031981,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051716,GO:0052751,GO:0060359,GO:0070013,GO:0070887,GO:0071242,GO:1901698,GO:1901699
Evalue	1.21e-22
EggNOG OGs	28JDX@1\|root,2QRSW@2759\|Eukaryota
Description	GDP-mannose hydrolase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3104	Gchil3104	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 94488..95321 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3104.t1.start1	Gchil3104.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 94488..94490 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3104.t1.CDS1	Gchil3104.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 94488..95321 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3104.t1.exon1	Gchil3104.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 94488..95321 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3104.t1.stop1	Gchil3104.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 95319..95321 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3104.t1	Gchil3104.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 94488..95321 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:94488..95321+
coding sequence from alignment at tig00004382_pilon:94488..95321+

mRNA sequence

>Gchil3104.t1 ID=Gchil3104.t1|Name=Gchil3104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=278bp
MDTEGTHQVVIPFAPGRRFAVSFSAGNNRKPSKSVALEHSIETTWCKRIA
ENNSLFNGSKFRLARITTTAELVILHLGLTDYRTYLATHAPPQPLHRFGP
ESMALPLGNVLVPITQDGYTFILIRSGKSAEGKFKCVFPGGHAEPSEVVH
VEDGDCSMIRKELMVSARREALEELFLDEQLLQRADEMIFLGIVRRSADW
KPSMVFSAHLYCDSTEVERRYRERNDLQEESVNIIRCSVRNILESGVEST
LPNGYDPMPELLGAAELFVEMQRTSNR*

spliced messenger RNA

>Gchil3104.t1 ID=Gchil3104.t1|Name=Gchil3104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00004382_pilon:94488..95321+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACTGAAGGTACTCACCAAGTTGTGATACCCTTTGCTCCAGGTCG
CCGGTTCGCCGTGTCATTTTCAGCAGGGAACAACAGGAAACCATCCAAAT
CCGTGGCCCTGGAGCACAGCATTGAAACAACATGGTGTAAACGAATCGCT
GAAAACAATAGCCTATTCAACGGGTCCAAATTCCGTCTGGCTCGAATAAC
TACTACGGCGGAACTGGTTATCTTGCACCTCGGCTTAACAGACTACAGAA
CTTATCTTGCAACACATGCACCCCCGCAACCCTTGCATCGATTCGGTCCA
GAGTCCATGGCTCTGCCTCTCGGCAATGTCTTAGTGCCTATCACCCAAGA
TGGGTATACTTTCATTCTGATCAGATCAGGCAAGTCTGCAGAAGGCAAGT
TTAAGTGCGTGTTTCCGGGGGGACATGCTGAACCAAGCGAGGTCGTCCAT
GTGGAGGATGGAGACTGTTCCATGATCCGAAAAGAACTGATGGTCTCGGC
GCGGCGCGAAGCCTTGGAGGAGTTGTTTTTAGATGAGCAATTGTTACAAC
GCGCCGACGAAATGATATTTCTCGGCATCGTGAGACGAAGTGCGGACTGG
AAACCTAGTATGGTCTTCTCCGCTCACTTGTACTGTGACAGTACTGAAGT
TGAAAGGAGATATCGAGAACGAAACGATCTACAGGAAGAATCTGTAAATA
TAATTCGATGCTCCGTGCGCAACATTCTTGAGTCTGGTGTCGAGTCTACA
CTTCCAAATGGATACGACCCAATGCCAGAACTACTCGGCGCAGCTGAACT
ATTTGTTGAAATGCAACGAACTTCAAACCGATGA

protein sequence of Gchil3104.t1

>Gchil3104.t1 ID=Gchil3104.t1|Name=Gchil3104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=278bp
MDTEGTHQVVIPFAPGRRFAVSFSAGNNRKPSKSVALEHSIETTWCKRIA
ENNSLFNGSKFRLARITTTAELVILHLGLTDYRTYLATHAPPQPLHRFGP
ESMALPLGNVLVPITQDGYTFILIRSGKSAEGKFKCVFPGGHAEPSEVVH
VEDGDCSMIRKELMVSARREALEELFLDEQLLQRADEMIFLGIVRRSADW
KPSMVFSAHLYCDSTEVERRYRERNDLQEESVNIIRCSVRNILESGVEST
LPNGYDPMPELLGAAELFVEMQRTSNR*

mRNA from alignment at tig00004382_pilon:94488..95321+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3104.t1 ID=Gchil3104.t1|Name=Gchil3104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00004382_pilon:94488..95321+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATACTGAAGGTACTCACCAAGTTGTGATACCCTTTGCTCCAGGTCG
CCGGTTCGCCGTGTCATTTTCAGCAGGGAACAACAGGAAACCATCCAAAT
CCGTGGCCCTGGAGCACAGCATTGAAACAACATGGTGTAAACGAATCGCT
GAAAACAATAGCCTATTCAACGGGTCCAAATTCCGTCTGGCTCGAATAAC
TACTACGGCGGAACTGGTTATCTTGCACCTCGGCTTAACAGACTACAGAA
CTTATCTTGCAACACATGCACCCCCGCAACCCTTGCATCGATTCGGTCCA
GAGTCCATGGCTCTGCCTCTCGGCAATGTCTTAGTGCCTATCACCCAAGA
TGGGTATACTTTCATTCTGATCAGATCAGGCAAGTCTGCAGAAGGCAAGT
TTAAGTGCGTGTTTCCGGGGGGACATGCTGAACCAAGCGAGGTCGTCCAT
GTGGAGGATGGAGACTGTTCCATGATCCGAAAAGAACTGATGGTCTCGGC
GCGGCGCGAAGCCTTGGAGGAGTTGTTTTTAGATGAGCAATTGTTACAAC
GCGCCGACGAAATGATATTTCTCGGCATCGTGAGACGAAGTGCGGACTGG
AAACCTAGTATGGTCTTCTCCGCTCACTTGTACTGTGACAGTACTGAAGT
TGAAAGGAGATATCGAGAACGAAACGATCTACAGGAAGAATCTGTAAATA
TAATTCGATGCTCCGTGCGCAACATTCTTGAGTCTGGTGTCGAGTCTACA
CTTCCAAATGGATACGACCCAATGCCAGAACTACTCGGCGCAGCTGAACT
ATTTGTTGAAATGCAACGAACTTCAAACCGATGA

Coding sequence (CDS) from alignment at tig00004382_pilon:94488..95321+

>Gchil3104.t1 ID=Gchil3104.t1|Name=Gchil3104.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00004382_pilon:94488..95321+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATACTGAAGGTACTCACCAAGTTGTGATACCCTTTGCTCCAGGTCG
CCGGTTCGCCGTGTCATTTTCAGCAGGGAACAACAGGAAACCATCCAAAT
CCGTGGCCCTGGAGCACAGCATTGAAACAACATGGTGTAAACGAATCGCT
GAAAACAATAGCCTATTCAACGGGTCCAAATTCCGTCTGGCTCGAATAAC
TACTACGGCGGAACTGGTTATCTTGCACCTCGGCTTAACAGACTACAGAA
CTTATCTTGCAACACATGCACCCCCGCAACCCTTGCATCGATTCGGTCCA
GAGTCCATGGCTCTGCCTCTCGGCAATGTCTTAGTGCCTATCACCCAAGA
TGGGTATACTTTCATTCTGATCAGATCAGGCAAGTCTGCAGAAGGCAAGT
TTAAGTGCGTGTTTCCGGGGGGACATGCTGAACCAAGCGAGGTCGTCCAT
GTGGAGGATGGAGACTGTTCCATGATCCGAAAAGAACTGATGGTCTCGGC
GCGGCGCGAAGCCTTGGAGGAGTTGTTTTTAGATGAGCAATTGTTACAAC
GCGCCGACGAAATGATATTTCTCGGCATCGTGAGACGAAGTGCGGACTGG
AAACCTAGTATGGTCTTCTCCGCTCACTTGTACTGTGACAGTACTGAAGT
TGAAAGGAGATATCGAGAACGAAACGATCTACAGGAAGAATCTGTAAATA
TAATTCGATGCTCCGTGCGCAACATTCTTGAGTCTGGTGTCGAGTCTACA
CTTCCAAATGGATACGACCCAATGCCAGAACTACTCGGCGCAGCTGAACT
ATTTGTTGAAATGCAACGAACTTCAAACCGATGA