Gchil3100.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3100.t1
Unique NameGchil3100.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:77256..78035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1380391.JIAS01000004_gene2917
PFAMsadh_short_C2
Max annot lvl204441|Rhodospirillales
Evalue4.38e-56
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MWB6@1224|Proteobacteria,2U3IW@28211|Alphaproteobacteria,2JVWS@204441|Rhodospirillales
DescriptionKR domain
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3100Gchil3100Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 77256..78035 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3100.t1.stop1Gchil3100.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 77256..77258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3100.t1.CDS1Gchil3100.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 77256..78035 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3100.t1.exon1Gchil3100.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 77256..78035 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3100.t1.start1Gchil3100.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 78033..78035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3100.t1Gchil3100.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 77256..78035 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3100.t1 ID=Gchil3100.t1|Name=Gchil3100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=260bp
MSDTITQSPPLSTDLKGKTALVTGGHRGIGREISVCLAEAGADIIIIDRK
GPAGSDVPDICAQLGRKYLAFCADVSNVEELRRVGEKASKDGIDILVNNA
GVAITKPFEELSVEDWDITMNVNLRSAFVLSQIVSRGENGMIARRKGVIV
NISTSSVFVPLRNHAAYACSKAGMNQLTVQMALELGHHNIRTNGVAPTVV
MTEMSRKRWEGEEGQKLKSRIPLGRFVRLREVANTVLFLASPQSEMVNGV
TVRVDGGVV*
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spliced messenger RNA

>Gchil3100.t1 ID=Gchil3100.t1|Name=Gchil3100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00004382_pilon:77256..78035- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATACCATTACACAGTCACCGCCGTTATCTACGGATCTAAAGGG
AAAGACAGCACTTGTTACGGGGGGCCATCGGGGAATTGGACGTGAAATTA
GCGTCTGTCTCGCAGAAGCAGGAGCAGATATCATTATTATTGACCGAAAA
GGTCCGGCGGGCTCTGACGTTCCCGATATTTGTGCCCAACTCGGTAGAAA
GTATCTCGCCTTTTGTGCGGATGTAAGCAATGTCGAGGAACTTCGAAGGG
TCGGTGAAAAGGCTTCCAAAGACGGAATCGATATACTGGTCAACAACGCT
GGGGTGGCCATCACAAAACCTTTTGAAGAACTAAGTGTAGAGGATTGGGA
TATTACAATGAATGTGAATCTTCGGTCCGCCTTTGTTCTTTCTCAGATAG
TGTCGAGGGGCGAAAACGGCATGATTGCTCGTAGAAAGGGAGTTATTGTT
AACATCAGCACCTCTTCGGTTTTTGTTCCGCTGAGAAACCATGCAGCCTA
CGCGTGCTCAAAAGCTGGTATGAATCAGTTGACAGTCCAAATGGCACTCG
AGCTGGGGCATCACAACATTCGCACAAATGGGGTCGCACCAACTGTCGTA
ATGACAGAAATGAGTCGAAAAAGATGGGAAGGAGAAGAGGGACAAAAACT
AAAGTCACGGATTCCTCTAGGTCGGTTTGTGAGACTTAGGGAGGTTGCTA
ACACCGTTCTGTTCCTTGCCAGCCCGCAAAGTGAAATGGTGAACGGGGTG
ACAGTGCGAGTTGATGGGGGTGTAGTGTAA
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protein sequence of Gchil3100.t1

>Gchil3100.t1 ID=Gchil3100.t1|Name=Gchil3100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=260bp
MSDTITQSPPLSTDLKGKTALVTGGHRGIGREISVCLAEAGADIIIIDRK
GPAGSDVPDICAQLGRKYLAFCADVSNVEELRRVGEKASKDGIDILVNNA
GVAITKPFEELSVEDWDITMNVNLRSAFVLSQIVSRGENGMIARRKGVIV
NISTSSVFVPLRNHAAYACSKAGMNQLTVQMALELGHHNIRTNGVAPTVV
MTEMSRKRWEGEEGQKLKSRIPLGRFVRLREVANTVLFLASPQSEMVNGV
TVRVDGGVV*
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mRNA from alignment at tig00004382_pilon:77256..78035-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3100.t1 ID=Gchil3100.t1|Name=Gchil3100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00004382_pilon:77256..78035- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGATACCATTACACAGTCACCGCCGTTATCTACGGATCTAAAGGG
AAAGACAGCACTTGTTACGGGGGGCCATCGGGGAATTGGACGTGAAATTA
GCGTCTGTCTCGCAGAAGCAGGAGCAGATATCATTATTATTGACCGAAAA
GGTCCGGCGGGCTCTGACGTTCCCGATATTTGTGCCCAACTCGGTAGAAA
GTATCTCGCCTTTTGTGCGGATGTAAGCAATGTCGAGGAACTTCGAAGGG
TCGGTGAAAAGGCTTCCAAAGACGGAATCGATATACTGGTCAACAACGCT
GGGGTGGCCATCACAAAACCTTTTGAAGAACTAAGTGTAGAGGATTGGGA
TATTACAATGAATGTGAATCTTCGGTCCGCCTTTGTTCTTTCTCAGATAG
TGTCGAGGGGCGAAAACGGCATGATTGCTCGTAGAAAGGGAGTTATTGTT
AACATCAGCACCTCTTCGGTTTTTGTTCCGCTGAGAAACCATGCAGCCTA
CGCGTGCTCAAAAGCTGGTATGAATCAGTTGACAGTCCAAATGGCACTCG
AGCTGGGGCATCACAACATTCGCACAAATGGGGTCGCACCAACTGTCGTA
ATGACAGAAATGAGTCGAAAAAGATGGGAAGGAGAAGAGGGACAAAAACT
AAAGTCACGGATTCCTCTAGGTCGGTTTGTGAGACTTAGGGAGGTTGCTA
ACACCGTTCTGTTCCTTGCCAGCCCGCAAAGTGAAATGGTGAACGGGGTG
ACAGTGCGAGTTGATGGGGGTGTAGTGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:77256..78035-

>Gchil3100.t1 ID=Gchil3100.t1|Name=Gchil3100.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00004382_pilon:77256..78035- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGATACCATTACACAGTCACCGCCGTTATCTACGGATCTAAAGGG
AAAGACAGCACTTGTTACGGGGGGCCATCGGGGAATTGGACGTGAAATTA
GCGTCTGTCTCGCAGAAGCAGGAGCAGATATCATTATTATTGACCGAAAA
GGTCCGGCGGGCTCTGACGTTCCCGATATTTGTGCCCAACTCGGTAGAAA
GTATCTCGCCTTTTGTGCGGATGTAAGCAATGTCGAGGAACTTCGAAGGG
TCGGTGAAAAGGCTTCCAAAGACGGAATCGATATACTGGTCAACAACGCT
GGGGTGGCCATCACAAAACCTTTTGAAGAACTAAGTGTAGAGGATTGGGA
TATTACAATGAATGTGAATCTTCGGTCCGCCTTTGTTCTTTCTCAGATAG
TGTCGAGGGGCGAAAACGGCATGATTGCTCGTAGAAAGGGAGTTATTGTT
AACATCAGCACCTCTTCGGTTTTTGTTCCGCTGAGAAACCATGCAGCCTA
CGCGTGCTCAAAAGCTGGTATGAATCAGTTGACAGTCCAAATGGCACTCG
AGCTGGGGCATCACAACATTCGCACAAATGGGGTCGCACCAACTGTCGTA
ATGACAGAAATGAGTCGAAAAAGATGGGAAGGAGAAGAGGGACAAAAACT
AAAGTCACGGATTCCTCTAGGTCGGTTTGTGAGACTTAGGGAGGTTGCTA
ACACCGTTCTGTTCCTTGCCAGCCCGCAAAGTGAAATGGTGAACGGGGTG
ACAGTGCGAGTTGATGGGGGTGTAGTGTAA
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