Gchil3096.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3096.t1
Unique NameGchil3096.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length530
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:64156..65745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3096Gchil3096Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 64156..65745 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3096.t1.start1Gchil3096.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 64156..64158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3096.t1.CDS1Gchil3096.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 64156..65745 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3096.t1.exon1Gchil3096.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 64156..65745 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3096.t1.stop1Gchil3096.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 65743..65745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3096.t1Gchil3096.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 64156..65745 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3096.t1 ID=Gchil3096.t1|Name=Gchil3096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=530bp
MATGFPSYPTHSEAQALASLATTSATEPFTGIQYFHELLRVLRDPAIARF
LFASDPIELQHLLNPQLPLFSVSNDMYETNVEPDSNPLDSLSDHWNSRQF
SFPALSSDGRTFGFLVSQDTYIPSSAWGFSQETIENLSLTRFVKEHNEGF
SVFVAYYKEFNAYRLEYTKLATSTRQVRFLVAVDASVFQNLRQRESLFVK
DMLPALQVMQMSIEHRICPNCSLSAQECLCPPPVVKPVHPFDYNAFRKCA
MNHAGVFEGRTALSLFAGGVHFRSGLLGSRFVSRPRYDIDLVEGLRRLAI
NKHVGGETARHSNIFVEFARNVRQARVEDGTDASTETALGDCNILEISDA
SGSLNVGTDTWDPNRLVPFLPEETESPRATDTGLAPSFIDAFLGSSEAPE
RLEHTINISEEMMISMGSEHEIGSQKSTEQIGKAKSDDGLVESELAPRTN
EGKSSNDNQVKHLKAELRKERNRASAQRSNMRKKAMTDALKSDLKTTREK
ADLLRSQEMLLRKQNIYLKQQVAEKLVKE*
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spliced messenger RNA

>Gchil3096.t1 ID=Gchil3096.t1|Name=Gchil3096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00004382_pilon:64156..65745+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTGGGTTTCCATCGTACCCCACACACTCCGAAGCGCAGGCACT
GGCATCACTTGCCACGACTTCTGCCACAGAACCCTTCACTGGTATCCAGT
ACTTTCACGAACTGCTTCGAGTCCTTCGAGATCCGGCAATCGCCAGGTTT
CTATTTGCAAGTGACCCTATTGAGCTTCAGCACCTACTTAATCCACAACT
CCCATTATTTTCTGTGTCAAATGATATGTACGAAACAAATGTGGAGCCCG
ACTCGAATCCCCTAGACTCTCTGTCTGACCACTGGAACAGTCGACAGTTT
TCATTTCCCGCTCTTAGTTCTGATGGAAGAACATTCGGTTTTCTTGTTTC
ACAGGACACGTACATTCCAAGTTCTGCATGGGGTTTCAGTCAGGAAACAA
TAGAAAATTTAAGTCTAACTAGATTTGTCAAAGAGCACAACGAAGGTTTC
TCAGTTTTTGTAGCGTACTACAAAGAATTCAATGCATATCGACTTGAATA
CACAAAACTGGCCACGAGTACGCGCCAAGTACGGTTTCTTGTCGCGGTGG
ATGCAAGCGTTTTCCAGAATCTCCGTCAAAGAGAATCGTTGTTCGTGAAG
GACATGCTTCCGGCTCTGCAGGTCATGCAGATGTCGATAGAACATCGTAT
ATGCCCAAATTGTTCGCTCTCCGCTCAAGAATGCTTATGCCCGCCTCCAG
TCGTGAAACCCGTACATCCATTCGACTACAATGCATTTAGAAAATGCGCC
ATGAATCATGCAGGTGTTTTTGAAGGGAGAACAGCTTTGAGTTTGTTTGC
AGGTGGGGTTCATTTCAGAAGTGGTTTGCTGGGTTCTCGGTTTGTCTCAC
GTCCAAGATATGACATCGACCTCGTTGAAGGACTACGACGATTGGCAATT
AACAAGCATGTTGGTGGAGAAACTGCTAGACATTCTAATATATTCGTTGA
ATTTGCGAGAAATGTGCGGCAGGCCCGAGTCGAAGACGGAACTGACGCAT
CAACGGAAACTGCTTTGGGTGACTGCAACATACTTGAGATTAGCGATGCT
TCCGGATCGTTGAATGTGGGCACTGATACTTGGGATCCCAATCGTTTAGT
TCCTTTTCTACCAGAGGAGACAGAATCCCCTCGAGCTACTGACACGGGTC
TTGCCCCATCTTTCATAGACGCCTTTCTAGGTTCTTCTGAAGCCCCGGAG
AGACTAGAACATACAATCAATATATCCGAGGAGATGATGATCAGTATGGG
ATCGGAGCATGAGATTGGTTCTCAGAAATCTACCGAACAGATCGGAAAAG
CTAAAAGTGATGATGGCCTCGTAGAATCCGAATTAGCACCAAGAACCAAC
GAAGGGAAATCCAGCAACGATAATCAGGTTAAACATCTCAAAGCAGAGCT
TAGAAAAGAGCGGAACAGGGCAAGTGCTCAACGAAGCAACATGAGAAAGA
AAGCAATGACAGACGCATTGAAGAGCGACCTTAAAACTACTCGAGAAAAG
GCGGACTTGTTACGTTCGCAGGAGATGCTTCTCCGTAAGCAGAATATATA
TTTAAAGCAGCAAGTGGCAGAGAAACTGGTTAAGGAGTAG
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protein sequence of Gchil3096.t1

>Gchil3096.t1 ID=Gchil3096.t1|Name=Gchil3096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=530bp
MATGFPSYPTHSEAQALASLATTSATEPFTGIQYFHELLRVLRDPAIARF
LFASDPIELQHLLNPQLPLFSVSNDMYETNVEPDSNPLDSLSDHWNSRQF
SFPALSSDGRTFGFLVSQDTYIPSSAWGFSQETIENLSLTRFVKEHNEGF
SVFVAYYKEFNAYRLEYTKLATSTRQVRFLVAVDASVFQNLRQRESLFVK
DMLPALQVMQMSIEHRICPNCSLSAQECLCPPPVVKPVHPFDYNAFRKCA
MNHAGVFEGRTALSLFAGGVHFRSGLLGSRFVSRPRYDIDLVEGLRRLAI
NKHVGGETARHSNIFVEFARNVRQARVEDGTDASTETALGDCNILEISDA
SGSLNVGTDTWDPNRLVPFLPEETESPRATDTGLAPSFIDAFLGSSEAPE
RLEHTINISEEMMISMGSEHEIGSQKSTEQIGKAKSDDGLVESELAPRTN
EGKSSNDNQVKHLKAELRKERNRASAQRSNMRKKAMTDALKSDLKTTREK
ADLLRSQEMLLRKQNIYLKQQVAEKLVKE*
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mRNA from alignment at tig00004382_pilon:64156..65745+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3096.t1 ID=Gchil3096.t1|Name=Gchil3096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at tig00004382_pilon:64156..65745+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACTGGGTTTCCATCGTACCCCACACACTCCGAAGCGCAGGCACT
GGCATCACTTGCCACGACTTCTGCCACAGAACCCTTCACTGGTATCCAGT
ACTTTCACGAACTGCTTCGAGTCCTTCGAGATCCGGCAATCGCCAGGTTT
CTATTTGCAAGTGACCCTATTGAGCTTCAGCACCTACTTAATCCACAACT
CCCATTATTTTCTGTGTCAAATGATATGTACGAAACAAATGTGGAGCCCG
ACTCGAATCCCCTAGACTCTCTGTCTGACCACTGGAACAGTCGACAGTTT
TCATTTCCCGCTCTTAGTTCTGATGGAAGAACATTCGGTTTTCTTGTTTC
ACAGGACACGTACATTCCAAGTTCTGCATGGGGTTTCAGTCAGGAAACAA
TAGAAAATTTAAGTCTAACTAGATTTGTCAAAGAGCACAACGAAGGTTTC
TCAGTTTTTGTAGCGTACTACAAAGAATTCAATGCATATCGACTTGAATA
CACAAAACTGGCCACGAGTACGCGCCAAGTACGGTTTCTTGTCGCGGTGG
ATGCAAGCGTTTTCCAGAATCTCCGTCAAAGAGAATCGTTGTTCGTGAAG
GACATGCTTCCGGCTCTGCAGGTCATGCAGATGTCGATAGAACATCGTAT
ATGCCCAAATTGTTCGCTCTCCGCTCAAGAATGCTTATGCCCGCCTCCAG
TCGTGAAACCCGTACATCCATTCGACTACAATGCATTTAGAAAATGCGCC
ATGAATCATGCAGGTGTTTTTGAAGGGAGAACAGCTTTGAGTTTGTTTGC
AGGTGGGGTTCATTTCAGAAGTGGTTTGCTGGGTTCTCGGTTTGTCTCAC
GTCCAAGATATGACATCGACCTCGTTGAAGGACTACGACGATTGGCAATT
AACAAGCATGTTGGTGGAGAAACTGCTAGACATTCTAATATATTCGTTGA
ATTTGCGAGAAATGTGCGGCAGGCCCGAGTCGAAGACGGAACTGACGCAT
CAACGGAAACTGCTTTGGGTGACTGCAACATACTTGAGATTAGCGATGCT
TCCGGATCGTTGAATGTGGGCACTGATACTTGGGATCCCAATCGTTTAGT
TCCTTTTCTACCAGAGGAGACAGAATCCCCTCGAGCTACTGACACGGGTC
TTGCCCCATCTTTCATAGACGCCTTTCTAGGTTCTTCTGAAGCCCCGGAG
AGACTAGAACATACAATCAATATATCCGAGGAGATGATGATCAGTATGGG
ATCGGAGCATGAGATTGGTTCTCAGAAATCTACCGAACAGATCGGAAAAG
CTAAAAGTGATGATGGCCTCGTAGAATCCGAATTAGCACCAAGAACCAAC
GAAGGGAAATCCAGCAACGATAATCAGGTTAAACATCTCAAAGCAGAGCT
TAGAAAAGAGCGGAACAGGGCAAGTGCTCAACGAAGCAACATGAGAAAGA
AAGCAATGACAGACGCATTGAAGAGCGACCTTAAAACTACTCGAGAAAAG
GCGGACTTGTTACGTTCGCAGGAGATGCTTCTCCGTAAGCAGAATATATA
TTTAAAGCAGCAAGTGGCAGAGAAACTGGTTAAGGAGTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:64156..65745+

>Gchil3096.t1 ID=Gchil3096.t1|Name=Gchil3096.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1590bp|location=Sequence derived from alignment at tig00004382_pilon:64156..65745+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACTGGGTTTCCATCGTACCCCACACACTCCGAAGCGCAGGCACT
GGCATCACTTGCCACGACTTCTGCCACAGAACCCTTCACTGGTATCCAGT
ACTTTCACGAACTGCTTCGAGTCCTTCGAGATCCGGCAATCGCCAGGTTT
CTATTTGCAAGTGACCCTATTGAGCTTCAGCACCTACTTAATCCACAACT
CCCATTATTTTCTGTGTCAAATGATATGTACGAAACAAATGTGGAGCCCG
ACTCGAATCCCCTAGACTCTCTGTCTGACCACTGGAACAGTCGACAGTTT
TCATTTCCCGCTCTTAGTTCTGATGGAAGAACATTCGGTTTTCTTGTTTC
ACAGGACACGTACATTCCAAGTTCTGCATGGGGTTTCAGTCAGGAAACAA
TAGAAAATTTAAGTCTAACTAGATTTGTCAAAGAGCACAACGAAGGTTTC
TCAGTTTTTGTAGCGTACTACAAAGAATTCAATGCATATCGACTTGAATA
CACAAAACTGGCCACGAGTACGCGCCAAGTACGGTTTCTTGTCGCGGTGG
ATGCAAGCGTTTTCCAGAATCTCCGTCAAAGAGAATCGTTGTTCGTGAAG
GACATGCTTCCGGCTCTGCAGGTCATGCAGATGTCGATAGAACATCGTAT
ATGCCCAAATTGTTCGCTCTCCGCTCAAGAATGCTTATGCCCGCCTCCAG
TCGTGAAACCCGTACATCCATTCGACTACAATGCATTTAGAAAATGCGCC
ATGAATCATGCAGGTGTTTTTGAAGGGAGAACAGCTTTGAGTTTGTTTGC
AGGTGGGGTTCATTTCAGAAGTGGTTTGCTGGGTTCTCGGTTTGTCTCAC
GTCCAAGATATGACATCGACCTCGTTGAAGGACTACGACGATTGGCAATT
AACAAGCATGTTGGTGGAGAAACTGCTAGACATTCTAATATATTCGTTGA
ATTTGCGAGAAATGTGCGGCAGGCCCGAGTCGAAGACGGAACTGACGCAT
CAACGGAAACTGCTTTGGGTGACTGCAACATACTTGAGATTAGCGATGCT
TCCGGATCGTTGAATGTGGGCACTGATACTTGGGATCCCAATCGTTTAGT
TCCTTTTCTACCAGAGGAGACAGAATCCCCTCGAGCTACTGACACGGGTC
TTGCCCCATCTTTCATAGACGCCTTTCTAGGTTCTTCTGAAGCCCCGGAG
AGACTAGAACATACAATCAATATATCCGAGGAGATGATGATCAGTATGGG
ATCGGAGCATGAGATTGGTTCTCAGAAATCTACCGAACAGATCGGAAAAG
CTAAAAGTGATGATGGCCTCGTAGAATCCGAATTAGCACCAAGAACCAAC
GAAGGGAAATCCAGCAACGATAATCAGGTTAAACATCTCAAAGCAGAGCT
TAGAAAAGAGCGGAACAGGGCAAGTGCTCAACGAAGCAACATGAGAAAGA
AAGCAATGACAGACGCATTGAAGAGCGACCTTAAAACTACTCGAGAAAAG
GCGGACTTGTTACGTTCGCAGGAGATGCTTCTCCGTAAGCAGAATATATA
TTTAAAGCAGCAAGTGGCAGAGAAACTGGTTAAGGAGTAG
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