Gchil3092.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3092.t1
Unique Name	Gchil3092.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:45210..46556 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4641.GSMUA_Achr11P00690_001
Preferred name	MSRA4
PFAMs	PMSR
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07304
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Evalue	6.75e-52
EggNOG OGs	COG0225@1\|root,KOG1635@2759\|Eukaryota,37JIQ@33090\|Viridiplantae,3GDQG@35493\|Streptophyta,3KWV2@4447\|Liliopsida
EC	1.8.4.11
Description	Peptide methionine sulfoxide
COG category	O
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3092	Gchil3092	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 45210..46556 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3092.t1.stop1	Gchil3092.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 45210..45212 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3092.t1.CDS1	Gchil3092.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 45210..46556 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3092.t1.exon1	Gchil3092.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 45210..46556 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3092.t1.start1	Gchil3092.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 46554..46556 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3092.t1	Gchil3092.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 45210..46556 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:45210..46556-
coding sequence from alignment at tig00004382_pilon:45210..46556-

mRNA sequence

>Gchil3092.t1 ID=Gchil3092.t1|Name=Gchil3092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=449bp
MGNVAKKTAVQNGKSKATTLVDEAIQTNPVVIFSKTYCPYCGSAKSDIRS
ALNKIGNPPTPKIFELDRMGYLGSQVQNYLAQITGRYTVPNVFIGGSTVG
GGDDIAAFARRGVLVQMLTQAPQKLAHQFPPQVAQSKPKPRSPEEAVENA
IKENAVMVFSKSYCPFCVQAKDLLEERVAAVEGLMPMKAFEMDEMGAEGN
AMQQYLLQKTGQRTVPNIFIGGKHVGGCDDVQGLDARNELVPMLASAVTS
VASRATTEVLAAEEEAETDTVQSAIVENEERQTAETKQIVFGAGCFWGVE
LAFQRVAGVLKTEVGYSNGKMARVTYDAICTGATGAAEVVRVWYDPSVVT
LNDLLKVWESRHDPTSLNKQGNDVGTQYRSAIYFSDENQAEDVRQWISEA
SGRHTKEVVTDVAAIKNYCSAEEYHQRYLEKKGQSAEKGSTATIRCYG*

spliced messenger RNA

>Gchil3092.t1 ID=Gchil3092.t1|Name=Gchil3092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00004382_pilon:45210..46556- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAACGTGGCAAAGAAGACCGCAGTTCAAAATGGAAAATCCAAAGC
TACAACATTGGTCGATGAGGCGATTCAAACTAATCCAGTGGTAATCTTCA
GCAAGACATATTGTCCGTATTGTGGATCTGCCAAATCCGACATTCGCTCC
GCTCTGAACAAGATTGGCAACCCACCAACACCCAAGATTTTTGAATTGGA
CAGAATGGGATATCTAGGCTCTCAAGTTCAGAATTATCTCGCCCAAATTA
CTGGCCGATACACAGTACCAAACGTGTTCATCGGTGGTTCCACAGTTGGG
GGCGGTGATGACATTGCAGCTTTTGCGCGTCGTGGCGTCCTTGTGCAAAT
GCTGACCCAAGCCCCACAGAAACTTGCTCATCAATTTCCCCCACAAGTCG
CTCAATCCAAGCCGAAGCCAAGAAGCCCCGAGGAAGCTGTTGAGAACGCA
ATTAAGGAGAACGCAGTTATGGTTTTTAGCAAGTCATATTGTCCGTTTTG
TGTCCAAGCCAAGGACCTTTTGGAAGAGCGTGTCGCCGCTGTCGAGGGTT
TGATGCCGATGAAGGCATTTGAAATGGATGAAATGGGCGCCGAAGGCAAT
GCCATGCAACAGTACTTGTTGCAGAAGACTGGACAACGAACCGTGCCCAA
CATCTTCATCGGCGGCAAGCACGTTGGTGGTTGCGATGATGTGCAAGGTC
TTGATGCTCGCAATGAGCTTGTTCCAATGCTCGCCAGTGCGGTCACTTCT
GTTGCGTCCCGGGCTACAACGGAGGTCCTCGCCGCGGAAGAAGAAGCAGA
AACTGACACTGTCCAATCTGCGATTGTGGAAAACGAAGAAAGACAAACGG
CAGAAACGAAGCAGATCGTCTTTGGAGCTGGTTGCTTCTGGGGCGTTGAA
TTGGCCTTCCAACGCGTTGCCGGTGTTTTGAAGACTGAGGTCGGTTATTC
CAACGGAAAGATGGCACGAGTTACCTACGACGCCATTTGCACTGGCGCTA
CAGGTGCGGCAGAGGTCGTTCGCGTGTGGTACGATCCATCTGTTGTGACT
TTGAATGACCTCTTGAAAGTTTGGGAGTCGCGTCATGACCCCACTTCCTT
AAACAAGCAGGGGAATGATGTTGGTACGCAATACAGGAGTGCCATATATT
TTTCTGATGAAAATCAGGCCGAGGACGTCCGGCAGTGGATTTCGGAGGCT
TCGGGGAGGCACACAAAGGAGGTAGTGACAGATGTGGCGGCGATTAAGAA
TTACTGTTCAGCGGAAGAGTATCATCAAAGATACCTTGAAAAGAAGGGGC
AGAGTGCTGAGAAAGGCTCGACGGCCACCATTCGTTGCTATGGATGA

protein sequence of Gchil3092.t1

>Gchil3092.t1 ID=Gchil3092.t1|Name=Gchil3092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=449bp
MGNVAKKTAVQNGKSKATTLVDEAIQTNPVVIFSKTYCPYCGSAKSDIRS
ALNKIGNPPTPKIFELDRMGYLGSQVQNYLAQITGRYTVPNVFIGGSTVG
GGDDIAAFARRGVLVQMLTQAPQKLAHQFPPQVAQSKPKPRSPEEAVENA
IKENAVMVFSKSYCPFCVQAKDLLEERVAAVEGLMPMKAFEMDEMGAEGN
AMQQYLLQKTGQRTVPNIFIGGKHVGGCDDVQGLDARNELVPMLASAVTS
VASRATTEVLAAEEEAETDTVQSAIVENEERQTAETKQIVFGAGCFWGVE
LAFQRVAGVLKTEVGYSNGKMARVTYDAICTGATGAAEVVRVWYDPSVVT
LNDLLKVWESRHDPTSLNKQGNDVGTQYRSAIYFSDENQAEDVRQWISEA
SGRHTKEVVTDVAAIKNYCSAEEYHQRYLEKKGQSAEKGSTATIRCYG*

mRNA from alignment at tig00004382_pilon:45210..46556-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3092.t1 ID=Gchil3092.t1|Name=Gchil3092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00004382_pilon:45210..46556- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAACGTGGCAAAGAAGACCGCAGTTCAAAATGGAAAATCCAAAGC
TACAACATTGGTCGATGAGGCGATTCAAACTAATCCAGTGGTAATCTTCA
GCAAGACATATTGTCCGTATTGTGGATCTGCCAAATCCGACATTCGCTCC
GCTCTGAACAAGATTGGCAACCCACCAACACCCAAGATTTTTGAATTGGA
CAGAATGGGATATCTAGGCTCTCAAGTTCAGAATTATCTCGCCCAAATTA
CTGGCCGATACACAGTACCAAACGTGTTCATCGGTGGTTCCACAGTTGGG
GGCGGTGATGACATTGCAGCTTTTGCGCGTCGTGGCGTCCTTGTGCAAAT
GCTGACCCAAGCCCCACAGAAACTTGCTCATCAATTTCCCCCACAAGTCG
CTCAATCCAAGCCGAAGCCAAGAAGCCCCGAGGAAGCTGTTGAGAACGCA
ATTAAGGAGAACGCAGTTATGGTTTTTAGCAAGTCATATTGTCCGTTTTG
TGTCCAAGCCAAGGACCTTTTGGAAGAGCGTGTCGCCGCTGTCGAGGGTT
TGATGCCGATGAAGGCATTTGAAATGGATGAAATGGGCGCCGAAGGCAAT
GCCATGCAACAGTACTTGTTGCAGAAGACTGGACAACGAACCGTGCCCAA
CATCTTCATCGGCGGCAAGCACGTTGGTGGTTGCGATGATGTGCAAGGTC
TTGATGCTCGCAATGAGCTTGTTCCAATGCTCGCCAGTGCGGTCACTTCT
GTTGCGTCCCGGGCTACAACGGAGGTCCTCGCCGCGGAAGAAGAAGCAGA
AACTGACACTGTCCAATCTGCGATTGTGGAAAACGAAGAAAGACAAACGG
CAGAAACGAAGCAGATCGTCTTTGGAGCTGGTTGCTTCTGGGGCGTTGAA
TTGGCCTTCCAACGCGTTGCCGGTGTTTTGAAGACTGAGGTCGGTTATTC
CAACGGAAAGATGGCACGAGTTACCTACGACGCCATTTGCACTGGCGCTA
CAGGTGCGGCAGAGGTCGTTCGCGTGTGGTACGATCCATCTGTTGTGACT
TTGAATGACCTCTTGAAAGTTTGGGAGTCGCGTCATGACCCCACTTCCTT
AAACAAGCAGGGGAATGATGTTGGTACGCAATACAGGAGTGCCATATATT
TTTCTGATGAAAATCAGGCCGAGGACGTCCGGCAGTGGATTTCGGAGGCT
TCGGGGAGGCACACAAAGGAGGTAGTGACAGATGTGGCGGCGATTAAGAA
TTACTGTTCAGCGGAAGAGTATCATCAAAGATACCTTGAAAAGAAGGGGC
AGAGTGCTGAGAAAGGCTCGACGGCCACCATTCGTTGCTATGGATGA

Coding sequence (CDS) from alignment at tig00004382_pilon:45210..46556-

>Gchil3092.t1 ID=Gchil3092.t1|Name=Gchil3092.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00004382_pilon:45210..46556- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAACGTGGCAAAGAAGACCGCAGTTCAAAATGGAAAATCCAAAGC
TACAACATTGGTCGATGAGGCGATTCAAACTAATCCAGTGGTAATCTTCA
GCAAGACATATTGTCCGTATTGTGGATCTGCCAAATCCGACATTCGCTCC
GCTCTGAACAAGATTGGCAACCCACCAACACCCAAGATTTTTGAATTGGA
CAGAATGGGATATCTAGGCTCTCAAGTTCAGAATTATCTCGCCCAAATTA
CTGGCCGATACACAGTACCAAACGTGTTCATCGGTGGTTCCACAGTTGGG
GGCGGTGATGACATTGCAGCTTTTGCGCGTCGTGGCGTCCTTGTGCAAAT
GCTGACCCAAGCCCCACAGAAACTTGCTCATCAATTTCCCCCACAAGTCG
CTCAATCCAAGCCGAAGCCAAGAAGCCCCGAGGAAGCTGTTGAGAACGCA
ATTAAGGAGAACGCAGTTATGGTTTTTAGCAAGTCATATTGTCCGTTTTG
TGTCCAAGCCAAGGACCTTTTGGAAGAGCGTGTCGCCGCTGTCGAGGGTT
TGATGCCGATGAAGGCATTTGAAATGGATGAAATGGGCGCCGAAGGCAAT
GCCATGCAACAGTACTTGTTGCAGAAGACTGGACAACGAACCGTGCCCAA
CATCTTCATCGGCGGCAAGCACGTTGGTGGTTGCGATGATGTGCAAGGTC
TTGATGCTCGCAATGAGCTTGTTCCAATGCTCGCCAGTGCGGTCACTTCT
GTTGCGTCCCGGGCTACAACGGAGGTCCTCGCCGCGGAAGAAGAAGCAGA
AACTGACACTGTCCAATCTGCGATTGTGGAAAACGAAGAAAGACAAACGG
CAGAAACGAAGCAGATCGTCTTTGGAGCTGGTTGCTTCTGGGGCGTTGAA
TTGGCCTTCCAACGCGTTGCCGGTGTTTTGAAGACTGAGGTCGGTTATTC
CAACGGAAAGATGGCACGAGTTACCTACGACGCCATTTGCACTGGCGCTA
CAGGTGCGGCAGAGGTCGTTCGCGTGTGGTACGATCCATCTGTTGTGACT
TTGAATGACCTCTTGAAAGTTTGGGAGTCGCGTCATGACCCCACTTCCTT
AAACAAGCAGGGGAATGATGTTGGTACGCAATACAGGAGTGCCATATATT
TTTCTGATGAAAATCAGGCCGAGGACGTCCGGCAGTGGATTTCGGAGGCT
TCGGGGAGGCACACAAAGGAGGTAGTGACAGATGTGGCGGCGATTAAGAA
TTACTGTTCAGCGGAAGAGTATCATCAAAGATACCTTGAAAAGAAGGGGC
AGAGTGCTGAGAAAGGCTCGACGGCCACCATTCGTTGCTATGGATGA