Gchil3077.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3077.t1
Unique NameGchil3077.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1715242..1716870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA22702
PFAMsTB2_DP1_HVA22
Max annot lvl2759|Eukaryota
Evalue5.28e-23
EggNOG OGs28M3K@1|root,2QTKE@2759|Eukaryota
DescriptionTB2/DP1, HVA22 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3077Gchil3077Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1715242..1716870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3077.t1.stop1Gchil3077.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1715242..1715244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3077.t1.CDS1Gchil3077.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1715242..1716870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3077.t1.exon1Gchil3077.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1715242..1716870 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3077.t1.start1Gchil3077.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1716868..1716870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3077.t1Gchil3077.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1715242..1716870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3077.t1 ID=Gchil3077.t1|Name=Gchil3077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=543bp
MLLSPELCQSLSMEYVRAARLLTKEAQLYLQEVLPLARETLKSSFTTFFL
ITRLLHAIARPLLALLQKLYNVLFPAISILLMKLWSAFCLQPARALAVEA
AISLALVFVSYLERRFRFLPRLRLFCVRTSSRVKRNYQLCLAEIRAKSKL
AALATPHIIFICLACLFHSIIGKRVSYFLQGARLLVLACIRPAVRSAMLL
YTVEVETVPETASETAPTNSDFAHILNSSQNRSFGAVTRRRRWSTGHAIM
PVSPATTRVKNRDTSLPRNSGNRYLSESESNDTPQQYSSVLALFEMPDCE
KEQEALELATLRFWVVFALAWAVRSFSWYFCPALFKSMLVNLDNFLLYFL
LWTELDITRGSETIYSLISRTVRGSGQRRAQNRLEKFNVVLRVLVATGVV
SEDRAGDLSTVVAESGLALLGGIFLITPRMVTFVGTIAVGFILPSYLSQG
VIESREAKVLYRHNWLSYWSMLYLIEIVYTATAHSLAWLPLWYHAKLAVV
LWLQLPYFRGAATVLDRVMEFLGKTMSSVQRQVVTPRKRKRA*
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spliced messenger RNA

>Gchil3077.t1 ID=Gchil3077.t1|Name=Gchil3077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000106_pilon:1715242..1716870- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGTCACCTGAGCTTTGTCAATCGCTAAGCATGGAATATGTGCG
TGCTGCCAGGTTGTTGACAAAAGAAGCTCAACTATACTTACAGGAGGTAC
TGCCACTCGCCCGCGAAACGCTCAAGTCTTCGTTTACAACTTTCTTCCTC
ATAACCCGTCTTCTGCACGCTATCGCACGCCCATTGCTCGCCCTTCTTCA
AAAACTTTACAATGTTTTGTTTCCCGCTATCTCTATCTTGTTAATGAAAC
TGTGGAGTGCGTTTTGTCTACAACCAGCTCGTGCTCTAGCAGTGGAAGCT
GCCATATCTCTCGCTTTGGTCTTCGTCTCCTATCTAGAAAGACGGTTTCG
GTTTTTGCCTCGTTTACGCTTGTTTTGCGTGCGAACTTCCTCCCGCGTGA
AAAGGAATTATCAACTGTGCCTTGCTGAAATTCGCGCAAAGTCTAAGTTG
GCAGCGCTGGCAACCCCACATATAATTTTCATTTGTCTTGCTTGTCTCTT
TCACTCCATTATTGGAAAGCGAGTATCCTATTTCTTACAAGGTGCTCGCC
TGCTTGTATTGGCATGTATTCGACCGGCAGTGCGCTCTGCCATGCTTCTG
TACACTGTTGAGGTCGAAACAGTACCGGAAACAGCATCGGAAACGGCCCC
CACTAACAGCGACTTTGCTCACATACTTAACTCATCACAAAACCGGTCTT
TCGGCGCTGTGACTCGTAGGCGTCGTTGGAGTACTGGCCATGCAATAATG
CCGGTTTCGCCAGCAACAACTCGCGTGAAAAATAGAGATACGTCGCTTCC
GCGCAACAGTGGTAACCGATATTTGTCTGAGTCTGAATCGAATGATACTC
CTCAACAGTATTCTTCGGTGTTGGCGCTTTTCGAGATGCCTGATTGTGAA
AAGGAACAAGAGGCGTTAGAACTTGCAACCTTGCGCTTTTGGGTTGTTTT
TGCGCTTGCTTGGGCTGTCCGATCATTTTCTTGGTATTTCTGCCCTGCAC
TATTCAAGTCAATGCTTGTCAACCTGGACAACTTTCTTTTGTACTTCTTG
TTGTGGACGGAACTTGATATCACCAGAGGATCGGAAACAATTTACTCGCT
AATTTCTAGAACCGTGAGGGGTAGTGGACAGAGGCGCGCTCAAAACAGAT
TAGAAAAGTTCAATGTCGTGCTGAGAGTTTTAGTTGCAACTGGCGTTGTG
AGCGAAGATCGGGCCGGAGATCTGTCCACTGTTGTGGCAGAATCAGGATT
GGCATTATTAGGAGGAATCTTCCTCATAACTCCACGAATGGTTACGTTTG
TAGGAACCATAGCAGTTGGATTTATTTTGCCTAGCTACCTTTCGCAGGGA
GTTATAGAATCACGCGAAGCGAAAGTACTCTACCGACATAACTGGTTATC
GTATTGGAGTATGTTATATTTGATTGAGATTGTATACACAGCGACGGCAC
ACTCTTTGGCGTGGCTCCCGTTGTGGTATCATGCCAAGCTGGCCGTTGTG
TTGTGGTTACAACTTCCGTATTTCCGAGGGGCCGCGACTGTACTCGATCG
CGTAATGGAATTTTTGGGTAAGACAATGTCGTCTGTTCAGCGGCAAGTAG
TGACGCCGCGAAAGAGAAAAAGGGCATGA
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protein sequence of Gchil3077.t1

>Gchil3077.t1 ID=Gchil3077.t1|Name=Gchil3077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=543bp
MLLSPELCQSLSMEYVRAARLLTKEAQLYLQEVLPLARETLKSSFTTFFL
ITRLLHAIARPLLALLQKLYNVLFPAISILLMKLWSAFCLQPARALAVEA
AISLALVFVSYLERRFRFLPRLRLFCVRTSSRVKRNYQLCLAEIRAKSKL
AALATPHIIFICLACLFHSIIGKRVSYFLQGARLLVLACIRPAVRSAMLL
YTVEVETVPETASETAPTNSDFAHILNSSQNRSFGAVTRRRRWSTGHAIM
PVSPATTRVKNRDTSLPRNSGNRYLSESESNDTPQQYSSVLALFEMPDCE
KEQEALELATLRFWVVFALAWAVRSFSWYFCPALFKSMLVNLDNFLLYFL
LWTELDITRGSETIYSLISRTVRGSGQRRAQNRLEKFNVVLRVLVATGVV
SEDRAGDLSTVVAESGLALLGGIFLITPRMVTFVGTIAVGFILPSYLSQG
VIESREAKVLYRHNWLSYWSMLYLIEIVYTATAHSLAWLPLWYHAKLAVV
LWLQLPYFRGAATVLDRVMEFLGKTMSSVQRQVVTPRKRKRA*
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mRNA from alignment at tig00000106_pilon:1715242..1716870-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3077.t1 ID=Gchil3077.t1|Name=Gchil3077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000106_pilon:1715242..1716870- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCTGTCACCTGAGCTTTGTCAATCGCTAAGCATGGAATATGTGCG
TGCTGCCAGGTTGTTGACAAAAGAAGCTCAACTATACTTACAGGAGGTAC
TGCCACTCGCCCGCGAAACGCTCAAGTCTTCGTTTACAACTTTCTTCCTC
ATAACCCGTCTTCTGCACGCTATCGCACGCCCATTGCTCGCCCTTCTTCA
AAAACTTTACAATGTTTTGTTTCCCGCTATCTCTATCTTGTTAATGAAAC
TGTGGAGTGCGTTTTGTCTACAACCAGCTCGTGCTCTAGCAGTGGAAGCT
GCCATATCTCTCGCTTTGGTCTTCGTCTCCTATCTAGAAAGACGGTTTCG
GTTTTTGCCTCGTTTACGCTTGTTTTGCGTGCGAACTTCCTCCCGCGTGA
AAAGGAATTATCAACTGTGCCTTGCTGAAATTCGCGCAAAGTCTAAGTTG
GCAGCGCTGGCAACCCCACATATAATTTTCATTTGTCTTGCTTGTCTCTT
TCACTCCATTATTGGAAAGCGAGTATCCTATTTCTTACAAGGTGCTCGCC
TGCTTGTATTGGCATGTATTCGACCGGCAGTGCGCTCTGCCATGCTTCTG
TACACTGTTGAGGTCGAAACAGTACCGGAAACAGCATCGGAAACGGCCCC
CACTAACAGCGACTTTGCTCACATACTTAACTCATCACAAAACCGGTCTT
TCGGCGCTGTGACTCGTAGGCGTCGTTGGAGTACTGGCCATGCAATAATG
CCGGTTTCGCCAGCAACAACTCGCGTGAAAAATAGAGATACGTCGCTTCC
GCGCAACAGTGGTAACCGATATTTGTCTGAGTCTGAATCGAATGATACTC
CTCAACAGTATTCTTCGGTGTTGGCGCTTTTCGAGATGCCTGATTGTGAA
AAGGAACAAGAGGCGTTAGAACTTGCAACCTTGCGCTTTTGGGTTGTTTT
TGCGCTTGCTTGGGCTGTCCGATCATTTTCTTGGTATTTCTGCCCTGCAC
TATTCAAGTCAATGCTTGTCAACCTGGACAACTTTCTTTTGTACTTCTTG
TTGTGGACGGAACTTGATATCACCAGAGGATCGGAAACAATTTACTCGCT
AATTTCTAGAACCGTGAGGGGTAGTGGACAGAGGCGCGCTCAAAACAGAT
TAGAAAAGTTCAATGTCGTGCTGAGAGTTTTAGTTGCAACTGGCGTTGTG
AGCGAAGATCGGGCCGGAGATCTGTCCACTGTTGTGGCAGAATCAGGATT
GGCATTATTAGGAGGAATCTTCCTCATAACTCCACGAATGGTTACGTTTG
TAGGAACCATAGCAGTTGGATTTATTTTGCCTAGCTACCTTTCGCAGGGA
GTTATAGAATCACGCGAAGCGAAAGTACTCTACCGACATAACTGGTTATC
GTATTGGAGTATGTTATATTTGATTGAGATTGTATACACAGCGACGGCAC
ACTCTTTGGCGTGGCTCCCGTTGTGGTATCATGCCAAGCTGGCCGTTGTG
TTGTGGTTACAACTTCCGTATTTCCGAGGGGCCGCGACTGTACTCGATCG
CGTAATGGAATTTTTGGGTAAGACAATGTCGTCTGTTCAGCGGCAAGTAG
TGACGCCGCGAAAGAGAAAAAGGGCATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1715242..1716870-

>Gchil3077.t1 ID=Gchil3077.t1|Name=Gchil3077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000106_pilon:1715242..1716870- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCTGTCACCTGAGCTTTGTCAATCGCTAAGCATGGAATATGTGCG
TGCTGCCAGGTTGTTGACAAAAGAAGCTCAACTATACTTACAGGAGGTAC
TGCCACTCGCCCGCGAAACGCTCAAGTCTTCGTTTACAACTTTCTTCCTC
ATAACCCGTCTTCTGCACGCTATCGCACGCCCATTGCTCGCCCTTCTTCA
AAAACTTTACAATGTTTTGTTTCCCGCTATCTCTATCTTGTTAATGAAAC
TGTGGAGTGCGTTTTGTCTACAACCAGCTCGTGCTCTAGCAGTGGAAGCT
GCCATATCTCTCGCTTTGGTCTTCGTCTCCTATCTAGAAAGACGGTTTCG
GTTTTTGCCTCGTTTACGCTTGTTTTGCGTGCGAACTTCCTCCCGCGTGA
AAAGGAATTATCAACTGTGCCTTGCTGAAATTCGCGCAAAGTCTAAGTTG
GCAGCGCTGGCAACCCCACATATAATTTTCATTTGTCTTGCTTGTCTCTT
TCACTCCATTATTGGAAAGCGAGTATCCTATTTCTTACAAGGTGCTCGCC
TGCTTGTATTGGCATGTATTCGACCGGCAGTGCGCTCTGCCATGCTTCTG
TACACTGTTGAGGTCGAAACAGTACCGGAAACAGCATCGGAAACGGCCCC
CACTAACAGCGACTTTGCTCACATACTTAACTCATCACAAAACCGGTCTT
TCGGCGCTGTGACTCGTAGGCGTCGTTGGAGTACTGGCCATGCAATAATG
CCGGTTTCGCCAGCAACAACTCGCGTGAAAAATAGAGATACGTCGCTTCC
GCGCAACAGTGGTAACCGATATTTGTCTGAGTCTGAATCGAATGATACTC
CTCAACAGTATTCTTCGGTGTTGGCGCTTTTCGAGATGCCTGATTGTGAA
AAGGAACAAGAGGCGTTAGAACTTGCAACCTTGCGCTTTTGGGTTGTTTT
TGCGCTTGCTTGGGCTGTCCGATCATTTTCTTGGTATTTCTGCCCTGCAC
TATTCAAGTCAATGCTTGTCAACCTGGACAACTTTCTTTTGTACTTCTTG
TTGTGGACGGAACTTGATATCACCAGAGGATCGGAAACAATTTACTCGCT
AATTTCTAGAACCGTGAGGGGTAGTGGACAGAGGCGCGCTCAAAACAGAT
TAGAAAAGTTCAATGTCGTGCTGAGAGTTTTAGTTGCAACTGGCGTTGTG
AGCGAAGATCGGGCCGGAGATCTGTCCACTGTTGTGGCAGAATCAGGATT
GGCATTATTAGGAGGAATCTTCCTCATAACTCCACGAATGGTTACGTTTG
TAGGAACCATAGCAGTTGGATTTATTTTGCCTAGCTACCTTTCGCAGGGA
GTTATAGAATCACGCGAAGCGAAAGTACTCTACCGACATAACTGGTTATC
GTATTGGAGTATGTTATATTTGATTGAGATTGTATACACAGCGACGGCAC
ACTCTTTGGCGTGGCTCCCGTTGTGGTATCATGCCAAGCTGGCCGTTGTG
TTGTGGTTACAACTTCCGTATTTCCGAGGGGCCGCGACTGTACTCGATCG
CGTAATGGAATTTTTGGGTAAGACAATGTCGTCTGTTCAGCGGCAAGTAG
TGACGCCGCGAAAGAGAAAAAGGGCATGA
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