Gchil3076.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3076.t1
Unique NameGchil3076.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1714356..1715132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173022.Cri9333_2508
PFAMsDUF1292,DUF3727
Max annot lvl1117|Cyanobacteria
Evalue1.73e-13
EggNOG OGs2B3Q5@1|root,31WDP@2|Bacteria,1G5B3@1117|Cyanobacteria,1H96Y@1150|Oscillatoriales
DescriptionPFAM Uncharacterised protein family UPF0473
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3076Gchil3076Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1714356..1715132 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3076.t1.start1Gchil3076.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1714356..1714358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3076.t1.CDS1Gchil3076.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1714356..1715132 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3076.t1.exon1Gchil3076.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1714356..1715132 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3076.t1.stop1Gchil3076.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1715130..1715132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3076.t1Gchil3076.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1714356..1715132 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3076.t1 ID=Gchil3076.t1|Name=Gchil3076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=259bp
MSAFIPPYLSAKRSAVLSTRTTCNNSFTKRLILLRNHRRAQHQRPETHTR
RIPPFAPICFNDGPGGDDDEDEEDDLQVTLRDPATRRSITVGIEEEFDFD
GKSHILCYPIDDPVALVENNHDGKLHPILDDDKIADLYPSAKAVCAERHI
ELKNTAYIMTLEDEREFADEDESEFVDEDDLEEEKEEDDEDDEDDDHSVE
VIAEFSHKEKEYMVIRPFQTIWLVASENNGTYMPIRDEQLEIVRPTIEKI
LAERDLSQ*
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spliced messenger RNA

>Gchil3076.t1 ID=Gchil3076.t1|Name=Gchil3076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000106_pilon:1714356..1715132+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGTTTATTCCACCGTACCTCTCCGCGAAGCGCTCTGCCGTGCT
TTCAACACGGACCACATGCAACAACTCTTTTACAAAACGTCTGATTCTCT
TGAGGAATCACAGACGTGCTCAACATCAGCGACCTGAGACTCATACACGC
CGTATACCTCCGTTCGCACCAATTTGTTTTAATGACGGACCCGGAGGTGA
CGATGACGAGGATGAAGAGGATGATCTGCAAGTGACCCTTCGCGATCCAG
CCACACGACGTTCCATCACAGTTGGCATTGAAGAGGAATTTGACTTTGAT
GGGAAATCTCATATTTTGTGCTACCCCATCGATGACCCCGTCGCGTTAGT
AGAGAATAATCATGATGGGAAGCTTCATCCTATTCTAGACGACGATAAAA
TCGCCGATCTCTATCCCAGTGCGAAAGCAGTTTGTGCTGAACGCCATATC
GAGCTCAAGAATACAGCCTATATCATGACTTTGGAGGACGAAAGAGAATT
CGCGGACGAAGACGAAAGTGAATTCGTGGATGAAGACGATCTCgaagaag
aaaaagaagaggatgacgaggatgacgaggatgacgaCCATTCTGTGGAA
GTAATTGCCGAGTTTTCGCACAAAGAGAAAGAGTACATGGTTATCCGTCC
TTTTCAAACGATCTGGCTGGTAGCAAGCGAGAATAATGGTACGTATATGC
CTATTAGAGATGAGCAGCTCGAAATCGTGCGACCCACTATCGAAAAGATC
CTCGCCGAACGTGATCTTAGCCAATGA
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protein sequence of Gchil3076.t1

>Gchil3076.t1 ID=Gchil3076.t1|Name=Gchil3076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=259bp
MSAFIPPYLSAKRSAVLSTRTTCNNSFTKRLILLRNHRRAQHQRPETHTR
RIPPFAPICFNDGPGGDDDEDEEDDLQVTLRDPATRRSITVGIEEEFDFD
GKSHILCYPIDDPVALVENNHDGKLHPILDDDKIADLYPSAKAVCAERHI
ELKNTAYIMTLEDEREFADEDESEFVDEDDLEEEKEEDDEDDEDDDHSVE
VIAEFSHKEKEYMVIRPFQTIWLVASENNGTYMPIRDEQLEIVRPTIEKI
LAERDLSQ*
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mRNA from alignment at tig00000106_pilon:1714356..1715132+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3076.t1 ID=Gchil3076.t1|Name=Gchil3076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000106_pilon:1714356..1715132+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCGTTTATTCCACCGTACCTCTCCGCGAAGCGCTCTGCCGTGCT
TTCAACACGGACCACATGCAACAACTCTTTTACAAAACGTCTGATTCTCT
TGAGGAATCACAGACGTGCTCAACATCAGCGACCTGAGACTCATACACGC
CGTATACCTCCGTTCGCACCAATTTGTTTTAATGACGGACCCGGAGGTGA
CGATGACGAGGATGAAGAGGATGATCTGCAAGTGACCCTTCGCGATCCAG
CCACACGACGTTCCATCACAGTTGGCATTGAAGAGGAATTTGACTTTGAT
GGGAAATCTCATATTTTGTGCTACCCCATCGATGACCCCGTCGCGTTAGT
AGAGAATAATCATGATGGGAAGCTTCATCCTATTCTAGACGACGATAAAA
TCGCCGATCTCTATCCCAGTGCGAAAGCAGTTTGTGCTGAACGCCATATC
GAGCTCAAGAATACAGCCTATATCATGACTTTGGAGGACGAAAGAGAATT
CGCGGACGAAGACGAAAGTGAATTCGTGGATGAAGACGATCTCgaagaag
aaaaagaagaggatgacgaggatgacgaggatgacgaCCATTCTGTGGAA
GTAATTGCCGAGTTTTCGCACAAAGAGAAAGAGTACATGGTTATCCGTCC
TTTTCAAACGATCTGGCTGGTAGCAAGCGAGAATAATGGTACGTATATGC
CTATTAGAGATGAGCAGCTCGAAATCGTGCGACCCACTATCGAAAAGATC
CTCGCCGAACGTGATCTTAGCCAATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1714356..1715132+

>Gchil3076.t1 ID=Gchil3076.t1|Name=Gchil3076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000106_pilon:1714356..1715132+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCGTTTATTCCACCGTACCTCTCCGCGAAGCGCTCTGCCGTGCT
TTCAACACGGACCACATGCAACAACTCTTTTACAAAACGTCTGATTCTCT
TGAGGAATCACAGACGTGCTCAACATCAGCGACCTGAGACTCATACACGC
CGTATACCTCCGTTCGCACCAATTTGTTTTAATGACGGACCCGGAGGTGA
CGATGACGAGGATGAAGAGGATGATCTGCAAGTGACCCTTCGCGATCCAG
CCACACGACGTTCCATCACAGTTGGCATTGAAGAGGAATTTGACTTTGAT
GGGAAATCTCATATTTTGTGCTACCCCATCGATGACCCCGTCGCGTTAGT
AGAGAATAATCATGATGGGAAGCTTCATCCTATTCTAGACGACGATAAAA
TCGCCGATCTCTATCCCAGTGCGAAAGCAGTTTGTGCTGAACGCCATATC
GAGCTCAAGAATACAGCCTATATCATGACTTTGGAGGACGAAAGAGAATT
CGCGGACGAAGACGAAAGTGAATTCGTGGATGAAGACGATCTCgaagaag
aaaaagaagaggatgacgaggatgacgaggatgacgaCCATTCTGTGGAA
GTAATTGCCGAGTTTTCGCACAAAGAGAAAGAGTACATGGTTATCCGTCC
TTTTCAAACGATCTGGCTGGTAGCAAGCGAGAATAATGGTACGTATATGC
CTATTAGAGATGAGCAGCTCGAAATCGTGCGACCCACTATCGAAAAGATC
CTCGCCGAACGTGATCTTAGCCAATGA
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