Gchil3066.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3066.t1
Unique NameGchil3066.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1628272..1629179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4897.EEB05387
Preferred nameARP1
PFAMsActin
Max annot lvl4751|Fungi
KEGG koko:K16575
GOsGO:0000003,GO:0000075,GO:0000132,GO:0000226,GO:0000278,GO:0000280,GO:0001100,GO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005869,GO:0005875,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007097,GO:0007127,GO:0007163,GO:0007346,GO:0008150,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0010970,GO:0015629,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030010,GO:0030071,GO:0030473,GO:0030705,GO:0030989,GO:0031577,GO:0031578,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046907,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051293,GO:0051294,GO:0051321,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0061982,GO:0065007,GO:0071174,GO:0071840,GO:0071944,GO:0072384,GO:0099111,GO:0099568,GO:0099738,GO:0140013,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902850,GO:1903046,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Evalue4.85e-64
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota,38CY2@33154|Opisthokonta,3NU18@4751|Fungi,3QKUA@4890|Ascomycota,3MBQC@451866|Taphrinomycotina
DescriptionBelongs to the actin family
COG categoryZ
BRITEko00000,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3066Gchil3066Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1628272..1629179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3066.t1Gchil3066.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1628272..1629179 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3066.t1.start1Gchil3066.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1628272..1628274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3066.t1.CDS1Gchil3066.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1628272..1629063 +
Gchil3066.t1.CDS2Gchil3066.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1629129..1629179 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3066.t1.exon1Gchil3066.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1628272..1629063 +
Gchil3066.t1.exon2Gchil3066.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1629129..1629179 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3066.t1.intron1Gchil3066.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1629064..1629128 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3066.t1.stop1Gchil3066.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1629177..1629179 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3066.t1 ID=Gchil3066.t1|Name=Gchil3066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=281bp
MHRGTVRNWGAAEEIWRHMCGELLSVAHGEHPFLVTENALNARSNRERLG
EFFFESLNAPSVCVALPGVLALFASGRCSGLVVDVGDTVCTVTGVAEGHV
LAHGVQRLELGGRDVNERLGALLRKSGASLVASWSEREAVRRMKERFCYV
ARDARHEEGEWARLARGTVNATLPDGNVVRVGAERFRAAEVLFRPEAMGV
ETGGVADATARCVGAADLSLRAPLLQSVLLCGGGTLTRGFAARLTAELRG
DGGGGCVAAGRATGSVDDVRRAGDDAKRIL*
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spliced messenger RNA

>Gchil3066.t1 ID=Gchil3066.t1|Name=Gchil3066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000106_pilon:1628272..1629179+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCGGCACGGTGCGCAACTGGGGCGCGGCCGAGGAGATTTGGCG
GCACATGTGCGGCGAGTTACTGTCGGTGGCGCACGGCGAACATCCGTTCC
TGGTGACGGAGAACGCGCTGAACGCGCGTAGCAACCGCGAGCGACTGGGC
GAGTTCTTCTTCGAAAGTCTCAACGCGCCGTCGGTGTGCGTGGCGTTGCC
CGGCGTGCTGGCGCTTTTCGCGTCGGGGCGGTGCAGCGGACTGGTGGTGG
ACGTGGGCGACACGGTGTGCACGGTGACGGGGGTGGCCGAGGGCCATGTG
CTGGCGCACGGGGTGCAGCGACTGGAACTTGGCGGACGCGACGTGAACGA
GCGACTGGGCGCGCTGCTGCGCAAGAGCGGGGCGTCACTGGTGGCCAGCT
GGTCGGAGCGCGAGGCGGTACGTCGCATGAAGGAGCGCTTTTGCTACGTT
GCGCGCGACGCGCGGCACGAAGAAGGCGAGTGGGCGCGTCTGGCTCGCGG
CACGGTGAACGCGACGTTGCCGGACGGCAACGTGGTGCGCGTGGGCGCGG
AGCGCTTCCGCGCGGCGGAGGTGCTGTTCCGACCCGAGGCGATGGGAGTG
GAGACGGGCGGGGTGGCCGATGCAACGGCGCGTTGCGTGGGCGCGGCCGA
CCTATCGCTGCGCGCGCCTCTGCTACAATCGGTGTTGCTGTGCGGCGGTG
GTACGTTGACGCGCGGCTTTGCGGCGCGTCTGACGGCCGAGCTGCGCGGC
GATGGTGGTGGTGGGTGCGTAGCAGCGGGGCGCGCAACGGGCTCTGTCGA
CGACGTTCGGCGCGCTGGCGACGACGCGAAGCGAATACTTTGA
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protein sequence of Gchil3066.t1

>Gchil3066.t1 ID=Gchil3066.t1|Name=Gchil3066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=281bp
MHRGTVRNWGAAEEIWRHMCGELLSVAHGEHPFLVTENALNARSNRERLG
EFFFESLNAPSVCVALPGVLALFASGRCSGLVVDVGDTVCTVTGVAEGHV
LAHGVQRLELGGRDVNERLGALLRKSGASLVASWSEREAVRRMKERFCYV
ARDARHEEGEWARLARGTVNATLPDGNVVRVGAERFRAAEVLFRPEAMGV
ETGGVADATARCVGAADLSLRAPLLQSVLLCGGGTLTRGFAARLTAELRG
DGGGGCVAAGRATGSVDDVRRAGDDAKRIL*
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mRNA from alignment at tig00000106_pilon:1628272..1629179+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3066.t1 ID=Gchil3066.t1|Name=Gchil3066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=908bp|location=Sequence derived from alignment at tig00000106_pilon:1628272..1629179+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCGGCACGGTGCGCAACTGGGGCGCGGCCGAGGAGATTTGGCG
GCACATGTGCGGCGAGTTACTGTCGGTGGCGCACGGCGAACATCCGTTCC
TGGTGACGGAGAACGCGCTGAACGCGCGTAGCAACCGCGAGCGACTGGGC
GAGTTCTTCTTCGAAAGTCTCAACGCGCCGTCGGTGTGCGTGGCGTTGCC
CGGCGTGCTGGCGCTTTTCGCGTCGGGGCGGTGCAGCGGACTGGTGGTGG
ACGTGGGCGACACGGTGTGCACGGTGACGGGGGTGGCCGAGGGCCATGTG
CTGGCGCACGGGGTGCAGCGACTGGAACTTGGCGGACGCGACGTGAACGA
GCGACTGGGCGCGCTGCTGCGCAAGAGCGGGGCGTCACTGGTGGCCAGCT
GGTCGGAGCGCGAGGCGGTACGTCGCATGAAGGAGCGCTTTTGCTACGTT
GCGCGCGACGCGCGGCACGAAGAAGGCGAGTGGGCGCGTCTGGCTCGCGG
CACGGTGAACGCGACGTTGCCGGACGGCAACGTGGTGCGCGTGGGCGCGG
AGCGCTTCCGCGCGGCGGAGGTGCTGTTCCGACCCGAGGCGATGGGAGTG
GAGACGGGCGGGGTGGCCGATGCAACGGCGCGTTGCGTGGGCGCGGCCGA
CCTATCGCTGCGCGCGCCTCTGCTACAATCGGTGTTGCTGTGCGGCGGTG
GTACGTTGACGCGCGGCTTTGCGGCGCGTCTGACGGCCGAGCTGCGCGGC
GATGGTGGTGGTGGGTGCGTAGCAGCGGGGCGCGCAACGGGCGTGCGTGT
GTTTGCGCCGCGCGACCGACTGACGTCGGCGTTTGCGGGCGGCTCGGTGC
TGGCCAGTCTGTCGACGACGTTCGGCGCGCTGGCGACGACGCGAAGCGAA
TACTTTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1628272..1629179+

>Gchil3066.t1 ID=Gchil3066.t1|Name=Gchil3066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000106_pilon:1628272..1629179+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCGGCACGGTGCGCAACTGGGGCGCGGCCGAGGAGATTTGGCG
GCACATGTGCGGCGAGTTACTGTCGGTGGCGCACGGCGAACATCCGTTCC
TGGTGACGGAGAACGCGCTGAACGCGCGTAGCAACCGCGAGCGACTGGGC
GAGTTCTTCTTCGAAAGTCTCAACGCGCCGTCGGTGTGCGTGGCGTTGCC
CGGCGTGCTGGCGCTTTTCGCGTCGGGGCGGTGCAGCGGACTGGTGGTGG
ACGTGGGCGACACGGTGTGCACGGTGACGGGGGTGGCCGAGGGCCATGTG
CTGGCGCACGGGGTGCAGCGACTGGAACTTGGCGGACGCGACGTGAACGA
GCGACTGGGCGCGCTGCTGCGCAAGAGCGGGGCGTCACTGGTGGCCAGCT
GGTCGGAGCGCGAGGCGGTACGTCGCATGAAGGAGCGCTTTTGCTACGTT
GCGCGCGACGCGCGGCACGAAGAAGGCGAGTGGGCGCGTCTGGCTCGCGG
CACGGTGAACGCGACGTTGCCGGACGGCAACGTGGTGCGCGTGGGCGCGG
AGCGCTTCCGCGCGGCGGAGGTGCTGTTCCGACCCGAGGCGATGGGAGTG
GAGACGGGCGGGGTGGCCGATGCAACGGCGCGTTGCGTGGGCGCGGCCGA
CCTATCGCTGCGCGCGCCTCTGCTACAATCGGTGTTGCTGTGCGGCGGTG
GTACGTTGACGCGCGGCTTTGCGGCGCGTCTGACGGCCGAGCTGCGCGGC
GATGGTGGTGGTGGGTGCGTAGCAGCGGGGCGCGCAACGGGCTCTGTCGA
CGACGTTCGGCGCGCTGGCGACGACGCGAAGCGAATACTTTGA
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