Gchil3065.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3065.t1
Unique NameGchil3065.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length101
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1627259..1627637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005094467.1
Preferred nameSHFM1
PFAMsDSS1_SEM1
Max annot lvl33208|Metazoa
KEGG koko:K10881
KEGG Pathwayko03050,ko03440,ko05169,map03050,map03440,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0000724,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032991,GO:0033554,GO:0034641,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
Evalue1.26e-09
EggNOG OGsKOG4764@1|root,KOG4764@2759|Eukaryota,3A8FA@33154|Opisthokonta,3BTZ6@33208|Metazoa,3D9FW@33213|Bilateria
Descriptionproteasome assembly
COG categoryS
BRITEko00000,ko00001,ko00002,ko03051,ko03400,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3065Gchil3065Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1627259..1627637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3065.t1Gchil3065.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1627259..1627637 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3065.t1.stop1Gchil3065.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1627259..1627261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3065.t1.CDS1Gchil3065.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1627259..1627404 -
Gchil3065.t1.CDS2Gchil3065.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1627481..1627637 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3065.t1.exon1Gchil3065.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1627259..1627404 -
Gchil3065.t1.exon2Gchil3065.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1627481..1627637 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3065.t1.intron1Gchil3065.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 1627405..1627480 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3065.t1.start1Gchil3065.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1627635..1627637 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3065.t1 ID=Gchil3065.t1|Name=Gchil3065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=101bp
MADDTNSPNAAAAAAAAAATATATAVKSEPTASPQNIDVLEEDDTFEEFE
DRDYNNAQMNPDHTVEWQDNWDDEVEGDDHFSRTLRAELQAQNNTPATNE
*
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spliced messenger RNA

>Gchil3065.t1 ID=Gchil3065.t1|Name=Gchil3065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=303bp|location=Sequence derived from alignment at tig00000106_pilon:1627259..1627637- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGACACCAACAGCCCCAACGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCACCGCCACCGCCACCGCCGTCAAGTCCGAGCCCACCGCCTCCC
CGCAAAACATCGACGTGCTCGAGGAGGACGACACTTTTGAGGAGTTTGAA
GATCGAGACTACAACAACGCCCAAATGAACCCCGACCACACCGTCGAGTG
GCAGGACAACTGGGACGACGAGGTCGAGGGCGACGATCACTTTTCGCGCA
CGCTGCGCGCCGAGCTGCAAGCCCAAAACAACACACCCGCCACCAACGAA
TGA
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protein sequence of Gchil3065.t1

>Gchil3065.t1 ID=Gchil3065.t1|Name=Gchil3065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=101bp
MADDTNSPNAAAAAAAAAATATATAVKSEPTASPQNIDVLEEDDTFEEFE
DRDYNNAQMNPDHTVEWQDNWDDEVEGDDHFSRTLRAELQAQNNTPATNE
*
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mRNA from alignment at tig00000106_pilon:1627259..1627637-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3065.t1 ID=Gchil3065.t1|Name=Gchil3065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp|location=Sequence derived from alignment at tig00000106_pilon:1627259..1627637- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACGACACCAACAGCCCCAACGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCACCGCCACCGCCACCGCCGTCAAGTCCGAGCCCACCGCCTCCC
CGCAAAACATCGACGTGCTCGAGGAGGACGACACTTTTGAGGAGTTTGAA
GATCGAGGTACGCGCCCGCCCACCCTTTCCCTTCCCCCGGCGCTTCCCCA
GTTCATCTGACCCCCACCCCCATCCGCGCGCAGACTACAACAACGCCCAA
ATGAACCCCGACCACACCGTCGAGTGGCAGGACAACTGGGACGACGAGGT
CGAGGGCGACGATCACTTTTCGCGCACGCTGCGCGCCGAGCTGCAAGCCC
AAAACAACACACCCGCCACCAACGAATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1627259..1627637-

>Gchil3065.t1 ID=Gchil3065.t1|Name=Gchil3065.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=303bp|location=Sequence derived from alignment at tig00000106_pilon:1627259..1627637- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGACGACACCAACAGCCCCAACGCCGCCGCCGCCGCCGCCGCCGC
CGCCGCCACCGCCACCGCCACCGCCGTCAAGTCCGAGCCCACCGCCTCCC
CGCAAAACATCGACGTGCTCGAGGAGGACGACACTTTTGAGGAGTTTGAA
GATCGAGACTACAACAACGCCCAAATGAACCCCGACCACACCGTCGAGTG
GCAGGACAACTGGGACGACGAGGTCGAGGGCGACGATCACTTTTCGCGCA
CGCTGCGCGCCGAGCTGCAAGCCCAAAACAACACACCCGCCACCAACGAA
TGA
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