Gchil3056.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3056.t1
Unique NameGchil3056.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1562858..1563694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3056Gchil3056Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1562858..1563694 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3056.t1.start1Gchil3056.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1562858..1562860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3056.t1.CDS1Gchil3056.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1562858..1563694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3056.t1.exon1Gchil3056.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1562858..1563694 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3056.t1.stop1Gchil3056.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1563692..1563694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3056.t1Gchil3056.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1562858..1563694 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3056.t1 ID=Gchil3056.t1|Name=Gchil3056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MADLMTQAPTTNPNRPTRRASHHKSLSEPALNPFESDDTMPPGESHDSSH
SRRQQTVHSSNVAGPSDLMLRNIVIAVTLLMAAFMFLHAALYVGIFVVGV
LAPAWRTFKSMEGRSASNVVIELLDSDEDDANNLNLRDVEADSSLKNWQQ
YWVLFALLFTVDALIIRSVFSSAITSPIHNTIAFSLLSWLTKNRAVNAAS
VYKKFVRPSFLKLEDGVDSMAATAMVHMDRASQEMIVLIHEAITPVVRQL
EQAATVTTAQIQQQQNKHVKSRRNNNNR*
back to top

spliced messenger RNA

>Gchil3056.t1 ID=Gchil3056.t1|Name=Gchil3056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000106_pilon:1562858..1563694+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACCTCATGACACAGGCGCCCACAACCAATCCGAACCGCCCCAC
CAGGCGTGCTTCCCATCACAAATCCCTTTCGGAACCCGCCTTGAATCCAT
TTGAATCAGACGACACGATGCCTCCTGGTGAGAGTCATGACTCATCGCAT
AGTCGTCGTCAACAGACTGTTCACTCCAGCAACGTCGCTGGACCATCAGA
CTTGATGTTGCGCAACATTGTAATAGCTGTCACTCTTCTAATGGCTGCTT
TCATGTTTCTTCACGCTGCACTATATGTTGGCATCTTTGTCGTTGGCGTT
CTTGCTCCAGCTTGGCGCACTTTTAAAAGTATGGAAGGCCGCTCGGCTTC
AAATGTCGTTATTGAACTTCTCGACAGCGATGAAGACGACGCGAACAATC
TCAACTTGAGAGATGTGGAAGCGGACAGCTCGCTGAAAAATTGGCAACAG
TACTGGGTTTTGTTTGCCCTACTCTTCACAGTCGACGCTCTGATCATTCG
ATCCGTATTTTCTTCCGCCATCACATCGCCGATTCATAACACGATTGCTT
TCTCGCTATTGTCTTGGCTTACCAAGAATCGAGCTGTCAATGCCGCGTCT
GTATACAAAAAGTTTGTAAGGCCTTCTTTTCTGAAGCTAGAGGATGGCGT
TGACTCCATGGCTGCCACCGCAATGGTGCACATGGATAGAGCCAGCCAAG
AAATGATTGTGTTAATTCACGAGGCAATTACACCGGTGGTAAGACAACTC
GAGCAGGCTGCTACAGTGACAACGGCTCAGATACAGCAACAACAAAATAA
GCATGTGAAATCCAGGAGAAACAATAACAATCGGTGA
back to top

protein sequence of Gchil3056.t1

>Gchil3056.t1 ID=Gchil3056.t1|Name=Gchil3056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MADLMTQAPTTNPNRPTRRASHHKSLSEPALNPFESDDTMPPGESHDSSH
SRRQQTVHSSNVAGPSDLMLRNIVIAVTLLMAAFMFLHAALYVGIFVVGV
LAPAWRTFKSMEGRSASNVVIELLDSDEDDANNLNLRDVEADSSLKNWQQ
YWVLFALLFTVDALIIRSVFSSAITSPIHNTIAFSLLSWLTKNRAVNAAS
VYKKFVRPSFLKLEDGVDSMAATAMVHMDRASQEMIVLIHEAITPVVRQL
EQAATVTTAQIQQQQNKHVKSRRNNNNR*
back to top

mRNA from alignment at tig00000106_pilon:1562858..1563694+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3056.t1 ID=Gchil3056.t1|Name=Gchil3056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000106_pilon:1562858..1563694+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACCTCATGACACAGGCGCCCACAACCAATCCGAACCGCCCCAC
CAGGCGTGCTTCCCATCACAAATCCCTTTCGGAACCCGCCTTGAATCCAT
TTGAATCAGACGACACGATGCCTCCTGGTGAGAGTCATGACTCATCGCAT
AGTCGTCGTCAACAGACTGTTCACTCCAGCAACGTCGCTGGACCATCAGA
CTTGATGTTGCGCAACATTGTAATAGCTGTCACTCTTCTAATGGCTGCTT
TCATGTTTCTTCACGCTGCACTATATGTTGGCATCTTTGTCGTTGGCGTT
CTTGCTCCAGCTTGGCGCACTTTTAAAAGTATGGAAGGCCGCTCGGCTTC
AAATGTCGTTATTGAACTTCTCGACAGCGATGAAGACGACGCGAACAATC
TCAACTTGAGAGATGTGGAAGCGGACAGCTCGCTGAAAAATTGGCAACAG
TACTGGGTTTTGTTTGCCCTACTCTTCACAGTCGACGCTCTGATCATTCG
ATCCGTATTTTCTTCCGCCATCACATCGCCGATTCATAACACGATTGCTT
TCTCGCTATTGTCTTGGCTTACCAAGAATCGAGCTGTCAATGCCGCGTCT
GTATACAAAAAGTTTGTAAGGCCTTCTTTTCTGAAGCTAGAGGATGGCGT
TGACTCCATGGCTGCCACCGCAATGGTGCACATGGATAGAGCCAGCCAAG
AAATGATTGTGTTAATTCACGAGGCAATTACACCGGTGGTAAGACAACTC
GAGCAGGCTGCTACAGTGACAACGGCTCAGATACAGCAACAACAAAATAA
GCATGTGAAATCCAGGAGAAACAATAACAATCGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000106_pilon:1562858..1563694+

>Gchil3056.t1 ID=Gchil3056.t1|Name=Gchil3056.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000106_pilon:1562858..1563694+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGACCTCATGACACAGGCGCCCACAACCAATCCGAACCGCCCCAC
CAGGCGTGCTTCCCATCACAAATCCCTTTCGGAACCCGCCTTGAATCCAT
TTGAATCAGACGACACGATGCCTCCTGGTGAGAGTCATGACTCATCGCAT
AGTCGTCGTCAACAGACTGTTCACTCCAGCAACGTCGCTGGACCATCAGA
CTTGATGTTGCGCAACATTGTAATAGCTGTCACTCTTCTAATGGCTGCTT
TCATGTTTCTTCACGCTGCACTATATGTTGGCATCTTTGTCGTTGGCGTT
CTTGCTCCAGCTTGGCGCACTTTTAAAAGTATGGAAGGCCGCTCGGCTTC
AAATGTCGTTATTGAACTTCTCGACAGCGATGAAGACGACGCGAACAATC
TCAACTTGAGAGATGTGGAAGCGGACAGCTCGCTGAAAAATTGGCAACAG
TACTGGGTTTTGTTTGCCCTACTCTTCACAGTCGACGCTCTGATCATTCG
ATCCGTATTTTCTTCCGCCATCACATCGCCGATTCATAACACGATTGCTT
TCTCGCTATTGTCTTGGCTTACCAAGAATCGAGCTGTCAATGCCGCGTCT
GTATACAAAAAGTTTGTAAGGCCTTCTTTTCTGAAGCTAGAGGATGGCGT
TGACTCCATGGCTGCCACCGCAATGGTGCACATGGATAGAGCCAGCCAAG
AAATGATTGTGTTAATTCACGAGGCAATTACACCGGTGGTAAGACAACTC
GAGCAGGCTGCTACAGTGACAACGGCTCAGATACAGCAACAACAAAATAA
GCATGTGAAATCCAGGAGAAACAATAACAATCGGTGA
back to top