Gchil3055.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3055.t1
Unique NameGchil3055.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1560931..1561716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.48
PFAMsPEX11
Max annot lvl4776|Peronosporales
Evalue8.33e-15
EggNOG OGs2CV0J@1|root,2RQ4E@2759|Eukaryota,3QA4G@4776|Peronosporales
DescriptionPeroxisomal biogenesis factor 11 (PEX11)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3055Gchil3055Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1560931..1561716 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3055.t1.start1Gchil3055.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1560931..1560933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3055.t1.CDS1Gchil3055.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1560931..1561716 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3055.t1.exon1Gchil3055.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1560931..1561716 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3055.t1.stop1Gchil3055.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1561714..1561716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3055.t1Gchil3055.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1560931..1561716 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3055.t1 ID=Gchil3055.t1|Name=Gchil3055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=262bp
MSVICSPLQVDTWHRAISNSEGRDKLFRLVQYVCKLLRGVKEIGDKSGSS
ATSGSPLLAVESAMATSRQISRLLKWTSVYAKRRHDMLRIPHTSVEMSNL
VSDLALFAYYLCDNITFLCKTGVVRRDASKASRRAARFWMLSVMSGLLST
VVTMVEIRRRHKLTRELIIKAENKERDSDDESADTDETRQAACKEMGALM
RLQRCAMVACTKQLSDLVVSLSLSRERGLHSALVGGCGVVSSAVGCWQTW
PAKEVIEPNSD*
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spliced messenger RNA

>Gchil3055.t1 ID=Gchil3055.t1|Name=Gchil3055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000106_pilon:1560931..1561716+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGTTATTTGCTCCCCGCTTCAGGTTGACACTTGGCACAGGGCGAT
ATCAAATTCCGAAGGACGCGATAAGCTTTTCCGCCTAGTTCAATATGTTT
GCAAGTTACTTCGCGGTGTGAAAGAAATTGGCGATAAATCGGGTTCAAGC
GCTACCTCGGGGTCTCCTCTGCTTGCAGTGGAATCTGCCATGGCAACTTC
ACGACAGATCAGTCGTTTACTGAAGTGGACGTCCGTATACGCGAAGCGTC
GCCATGATATGCTCCGAATTCCACACACTAGCGTGGAGATGAGCAACTTG
GTGTCTGATTTGGCTTTGTTTGCGTACTACCTCTGCGATAATATTACTTT
TCTGTGTAAGACGGGTGTGGTAAGGCGTGATGCGTCGAAGGCGTCAAGGA
GAGCAGCACGGTTCTGGATGCTTTCCGTGATGAGTGGTTTATTGAGCACG
GTGGTGACCATGGTGGAGATTCGGCGTCGTCACAAACTTACGCGTGAGCT
CATCATAAAAGCGGAGAACAAAGAACGGGACAGTGACGATGAGAGTGCAG
ATACCGATGAGACACGACAGGCGGCATGTAAGGAGATGGGAGCGTTGATG
AGACTTCAACGATGCGCAATGGTGGCATGTACAAAGCAATTGTCGGACCT
AGTTGTTTCGTTGAGTCTTAGTAGGGAACGTGGTTTGCACTCCGCGTTGG
TCGGTGGTTGTGGAGTTGTAAGTAGTGCAGTTGGATGTTGGCAAACTTGG
CCTGCCAAGGAAGTGATAGAGCCTAACAGCGACTGA
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protein sequence of Gchil3055.t1

>Gchil3055.t1 ID=Gchil3055.t1|Name=Gchil3055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MSVICSPLQVDTWHRAISNSEGRDKLFRLVQYVCKLLRGVKEIGDKSGSS
ATSGSPLLAVESAMATSRQISRLLKWTSVYAKRRHDMLRIPHTSVEMSNL
VSDLALFAYYLCDNITFLCKTGVVRRDASKASRRAARFWMLSVMSGLLST
VVTMVEIRRRHKLTRELIIKAENKERDSDDESADTDETRQAACKEMGALM
RLQRCAMVACTKQLSDLVVSLSLSRERGLHSALVGGCGVVSSAVGCWQTW
PAKEVIEPNSD*
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mRNA from alignment at tig00000106_pilon:1560931..1561716+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3055.t1 ID=Gchil3055.t1|Name=Gchil3055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00000106_pilon:1560931..1561716+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGTTATTTGCTCCCCGCTTCAGGTTGACACTTGGCACAGGGCGAT
ATCAAATTCCGAAGGACGCGATAAGCTTTTCCGCCTAGTTCAATATGTTT
GCAAGTTACTTCGCGGTGTGAAAGAAATTGGCGATAAATCGGGTTCAAGC
GCTACCTCGGGGTCTCCTCTGCTTGCAGTGGAATCTGCCATGGCAACTTC
ACGACAGATCAGTCGTTTACTGAAGTGGACGTCCGTATACGCGAAGCGTC
GCCATGATATGCTCCGAATTCCACACACTAGCGTGGAGATGAGCAACTTG
GTGTCTGATTTGGCTTTGTTTGCGTACTACCTCTGCGATAATATTACTTT
TCTGTGTAAGACGGGTGTGGTAAGGCGTGATGCGTCGAAGGCGTCAAGGA
GAGCAGCACGGTTCTGGATGCTTTCCGTGATGAGTGGTTTATTGAGCACG
GTGGTGACCATGGTGGAGATTCGGCGTCGTCACAAACTTACGCGTGAGCT
CATCATAAAAGCGGAGAACAAAGAACGGGACAGTGACGATGAGAGTGCAG
ATACCGATGAGACACGACAGGCGGCATGTAAGGAGATGGGAGCGTTGATG
AGACTTCAACGATGCGCAATGGTGGCATGTACAAAGCAATTGTCGGACCT
AGTTGTTTCGTTGAGTCTTAGTAGGGAACGTGGTTTGCACTCCGCGTTGG
TCGGTGGTTGTGGAGTTGTAAGTAGTGCAGTTGGATGTTGGCAAACTTGG
CCTGCCAAGGAAGTGATAGAGCCTAACAGCGACTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1560931..1561716+

>Gchil3055.t1 ID=Gchil3055.t1|Name=Gchil3055.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00000106_pilon:1560931..1561716+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGTTATTTGCTCCCCGCTTCAGGTTGACACTTGGCACAGGGCGAT
ATCAAATTCCGAAGGACGCGATAAGCTTTTCCGCCTAGTTCAATATGTTT
GCAAGTTACTTCGCGGTGTGAAAGAAATTGGCGATAAATCGGGTTCAAGC
GCTACCTCGGGGTCTCCTCTGCTTGCAGTGGAATCTGCCATGGCAACTTC
ACGACAGATCAGTCGTTTACTGAAGTGGACGTCCGTATACGCGAAGCGTC
GCCATGATATGCTCCGAATTCCACACACTAGCGTGGAGATGAGCAACTTG
GTGTCTGATTTGGCTTTGTTTGCGTACTACCTCTGCGATAATATTACTTT
TCTGTGTAAGACGGGTGTGGTAAGGCGTGATGCGTCGAAGGCGTCAAGGA
GAGCAGCACGGTTCTGGATGCTTTCCGTGATGAGTGGTTTATTGAGCACG
GTGGTGACCATGGTGGAGATTCGGCGTCGTCACAAACTTACGCGTGAGCT
CATCATAAAAGCGGAGAACAAAGAACGGGACAGTGACGATGAGAGTGCAG
ATACCGATGAGACACGACAGGCGGCATGTAAGGAGATGGGAGCGTTGATG
AGACTTCAACGATGCGCAATGGTGGCATGTACAAAGCAATTGTCGGACCT
AGTTGTTTCGTTGAGTCTTAGTAGGGAACGTGGTTTGCACTCCGCGTTGG
TCGGTGGTTGTGGAGTTGTAAGTAGTGCAGTTGGATGTTGGCAAACTTGG
CCTGCCAAGGAAGTGATAGAGCCTAACAGCGACTGA
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