Gchil3047.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3047.t1
Unique Name	Gchil3047.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1402198..1404204 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1313172.YM304_00980
PFAMs	Beta_propel
Max annot lvl	201174\|Actinobacteria
Evalue	1.07e-106
EggNOG OGs	COG1948@1\|root,COG4880@2\|Bacteria,2I8JU@201174\|Actinobacteria
Description	Beta propeller domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3047	Gchil3047	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1402198..1404204 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3047.t1.stop1	Gchil3047.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1402198..1402200 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3047.t1.CDS1	Gchil3047.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1402198..1404204 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3047.t1.exon1	Gchil3047.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1402198..1404204 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3047.t1.start1	Gchil3047.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1404202..1404204 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3047.t1	Gchil3047.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1402198..1404204 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1402198..1404204-
coding sequence from alignment at tig00000106_pilon:1402198..1404204-

mRNA sequence

>Gchil3047.t1 ID=Gchil3047.t1|Name=Gchil3047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp
MTLFTSFSVAFLLIALANGANGNLINKFGNCPELNNYYINRAVNLVGPYG
LNSYNAYTRSRNPEGDVDPGTPGGPAGLPLHKPFADPQRVAGGNLTDADR
NTNADDSEEDNGLIPGVDYSTTNVQVTGVDEPDIIKTDGRRVFTVSGNTF
SVVEVLEGGKTGRRVGRLELPSRPQDMLIQGDFLLALGEVGNYRRPVHVR
YKTDPSQGEQATVVYQIHVNGGTPRLVSTLYLEGNYIRSREVDGVVRLVL
RFRPLSSVWLYYPTRNVPASQTQKWNREIIQYSRPGNWLPTYRLQRNGRE
QFGVYATCSDIYYSPNVFAGFNLLTVVTLPIAGFLEPSSSAAVVSDADTV
YATEKSLFVTTNEIRFNDVATNSVRWGSDYQTAIHHFALSDAGASYVASG
AVSGSTINQFAMHEWHDTFFIATTDGARWWSSRDLSRSKVTAFLPNRNTR
QLVKIGEVGNLGVGERIFSVRYIGETAYVVTFRQVDPLYIIDLSNPRAMR
VTGELKIPGFSSYLHPVGPGRLLGVGQEASLSGRTLGAKVSLFDVSDKTN
PLELATWTISGSSTEAQWDHRAFLYWPRERVAVLPVNVYLYSQRFTGAIV
LNISDSTITERGRVTHNTTGLNWWSWWQRSIKRNAIIGREHLWSMSESLL
QVNNLNQLSEVEGQVSIA*

spliced messenger RNA

>Gchil3047.t1 ID=Gchil3047.t1|Name=Gchil3047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00000106_pilon:1402198..1404204- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTGTTTACATCATTTTCCGTTGCTTTCCTCCTAATTGCCCTAGC
AAATGGCGCCAATGGCAACCTTATTAACAAGTTTGGCAACTGCCCAGAGC
TCAACAACTACTACATCAACCGTGCCGTGAACTTGGTCGGTCCATATGGA
CTTAATTCCTACAACGCATACACCCGCAGTCGAAACCCAGAAGGAGATGT
GGACCCTGGAACGCCAGGCGGTCCCGCCGGGCTTCCCCTCCACAAGCCGT
TCGCTGATCCGCAACGCGTTGCCGGCGGTAATCTTACCGATGCTGATCGC
AACACCAACGCTGATGACTCCGAGGAAGATAATGGTCTGATCCCGGGTGT
CGACTATTCGACAACTAACGTCCAGGTCACTGGTGTCGATGAACCGGATA
TCATCAAGACAGATGGCCGCCGAGTGTTCACGGTGAGCGGCAACACGTTC
TCTGTTGTGGAGGTGCTGGAGGGCGGAAAGACCGGCCGACGTGTCGGCAG
ATTGGAGCTGCCGTCGCGCCCACAGGATATGTTGATTCAGGGCGATTTCT
TACTTGCACTAGGGGAAGTAGGAAATTACAGACGCCCGGTGCACGTTCGC
TACAAGACGGATCCGTCGCAAGGAGAGCAGGCAACCGTTGTATATCAGAT
TCACGTCAACGGTGGTACGCCACGCCTGGTGTCCACGCTTTACCTCGAGG
GCAACTATATCAGATCGCGCGAGGTCGATGGTGTCGTCCGCCTGGTGTTG
CGCTTCCGCCCGCTGTCGTCCGTCTGGCTGTACTACCCAACGAGAAACGT
GCCAGCCTCGCAGACACAGAAGTGGAACCGTGAGATCATCCAGTATTCTC
GACCTGGGAACTGGCTGCCGACGTACCGGCTGCAGCGCAATGGCCGCGAG
CAATTCGGCGTGTATGCGACGTGTAGTGATATCTACTACTCGCCGAACGT
CTTTGCTGGCTTCAACCTCCTCACGGTCGTCACGCTGCCCATTGCGGGCT
TCTTAGAGCCTTCTAGTTCGGCAGCCGTTGTGTCCGACGCCGACACAGTG
TACGCTACGGAGAAGTCCTTGTTCGTCACGACTAACGAGATCCGCTTCAA
CGATGTGGCAACGAACTCGGTGCGCTGGGGTTCCGATTACCAAACTGCAA
TCCACCACTTTGCGCTGTCAGACGCAGGCGCGTCGTACGTGGCGAGCGGT
GCCGTGAGCGGCAGCACCATCAACCAGTTTGCAATGCATGAGTGGCACGA
CACGTTCTTCATCGCGACGACGGATGGCGCGAGATGGTGGAGTTCTCGCG
ATCTGAGCCGCAGCAAGGTGACGGCGTTCCTGCCCAACCGAAATACACGC
CAGCTAGTGAAGATTGGAGAAGTGGGAAACCTTGGTGTTGGCGAACGTAT
ATTCTCGGTGCGCTACATCGGGGAAACCGCGTATGTCGTGACGTTCCGCC
AAGTTGATCCGCTGTACATCATCGACCTGTCGAACCCGCGCGCGATGCGC
GTGACGGGTGAGCTTAAGATCCCAGGCTTCAGCTCATACTTACACCCAGT
CGGGCCGGGGCGTCTCCTTGGAGTCGGACAGGAGGCCAGTCTTTCTGGTC
GCACGCTAGGCGCGAAGGTGTCGCTCTTCGATGTGAGCGACAAGACGAAT
CCTCTTGAGCTCGCCACGTGGACTATAAGCGGCAGCAGCACGGAAGCACA
GTGGGATCACCGCGCGTTCCTGTACTGGCCCCGCGAGCGCGTTGCCGTGT
TGCCGGTGAATGTGTATTTGTACTCGCAGCGATTCACCGGCGCAATCGTG
CTCAACATATCCGATTCGACCATTACAGAGCGCGGCCGAGTGACGCACAA
CACAACCGGGCTGAACTGGTGGAGTTGGTGGCAGCGCAGCATCAAACGTA
ATGCGATCATCGGCAGGGAGCACCTTTGGTCCATGTCGGAGTCGCTTCTT
CAGGTCAACAATCTGAATCAGCTCAGCGAGGTCGAGGGTCAAGTCTCGAT
TGCTTAG

protein sequence of Gchil3047.t1

>Gchil3047.t1 ID=Gchil3047.t1|Name=Gchil3047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=669bp
MTLFTSFSVAFLLIALANGANGNLINKFGNCPELNNYYINRAVNLVGPYG
LNSYNAYTRSRNPEGDVDPGTPGGPAGLPLHKPFADPQRVAGGNLTDADR
NTNADDSEEDNGLIPGVDYSTTNVQVTGVDEPDIIKTDGRRVFTVSGNTF
SVVEVLEGGKTGRRVGRLELPSRPQDMLIQGDFLLALGEVGNYRRPVHVR
YKTDPSQGEQATVVYQIHVNGGTPRLVSTLYLEGNYIRSREVDGVVRLVL
RFRPLSSVWLYYPTRNVPASQTQKWNREIIQYSRPGNWLPTYRLQRNGRE
QFGVYATCSDIYYSPNVFAGFNLLTVVTLPIAGFLEPSSSAAVVSDADTV
YATEKSLFVTTNEIRFNDVATNSVRWGSDYQTAIHHFALSDAGASYVASG
AVSGSTINQFAMHEWHDTFFIATTDGARWWSSRDLSRSKVTAFLPNRNTR
QLVKIGEVGNLGVGERIFSVRYIGETAYVVTFRQVDPLYIIDLSNPRAMR
VTGELKIPGFSSYLHPVGPGRLLGVGQEASLSGRTLGAKVSLFDVSDKTN
PLELATWTISGSSTEAQWDHRAFLYWPRERVAVLPVNVYLYSQRFTGAIV
LNISDSTITERGRVTHNTTGLNWWSWWQRSIKRNAIIGREHLWSMSESLL
QVNNLNQLSEVEGQVSIA*

mRNA from alignment at tig00000106_pilon:1402198..1404204-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3047.t1 ID=Gchil3047.t1|Name=Gchil3047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00000106_pilon:1402198..1404204- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTTGTTTACATCATTTTCCGTTGCTTTCCTCCTAATTGCCCTAGC
AAATGGCGCCAATGGCAACCTTATTAACAAGTTTGGCAACTGCCCAGAGC
TCAACAACTACTACATCAACCGTGCCGTGAACTTGGTCGGTCCATATGGA
CTTAATTCCTACAACGCATACACCCGCAGTCGAAACCCAGAAGGAGATGT
GGACCCTGGAACGCCAGGCGGTCCCGCCGGGCTTCCCCTCCACAAGCCGT
TCGCTGATCCGCAACGCGTTGCCGGCGGTAATCTTACCGATGCTGATCGC
AACACCAACGCTGATGACTCCGAGGAAGATAATGGTCTGATCCCGGGTGT
CGACTATTCGACAACTAACGTCCAGGTCACTGGTGTCGATGAACCGGATA
TCATCAAGACAGATGGCCGCCGAGTGTTCACGGTGAGCGGCAACACGTTC
TCTGTTGTGGAGGTGCTGGAGGGCGGAAAGACCGGCCGACGTGTCGGCAG
ATTGGAGCTGCCGTCGCGCCCACAGGATATGTTGATTCAGGGCGATTTCT
TACTTGCACTAGGGGAAGTAGGAAATTACAGACGCCCGGTGCACGTTCGC
TACAAGACGGATCCGTCGCAAGGAGAGCAGGCAACCGTTGTATATCAGAT
TCACGTCAACGGTGGTACGCCACGCCTGGTGTCCACGCTTTACCTCGAGG
GCAACTATATCAGATCGCGCGAGGTCGATGGTGTCGTCCGCCTGGTGTTG
CGCTTCCGCCCGCTGTCGTCCGTCTGGCTGTACTACCCAACGAGAAACGT
GCCAGCCTCGCAGACACAGAAGTGGAACCGTGAGATCATCCAGTATTCTC
GACCTGGGAACTGGCTGCCGACGTACCGGCTGCAGCGCAATGGCCGCGAG
CAATTCGGCGTGTATGCGACGTGTAGTGATATCTACTACTCGCCGAACGT
CTTTGCTGGCTTCAACCTCCTCACGGTCGTCACGCTGCCCATTGCGGGCT
TCTTAGAGCCTTCTAGTTCGGCAGCCGTTGTGTCCGACGCCGACACAGTG
TACGCTACGGAGAAGTCCTTGTTCGTCACGACTAACGAGATCCGCTTCAA
CGATGTGGCAACGAACTCGGTGCGCTGGGGTTCCGATTACCAAACTGCAA
TCCACCACTTTGCGCTGTCAGACGCAGGCGCGTCGTACGTGGCGAGCGGT
GCCGTGAGCGGCAGCACCATCAACCAGTTTGCAATGCATGAGTGGCACGA
CACGTTCTTCATCGCGACGACGGATGGCGCGAGATGGTGGAGTTCTCGCG
ATCTGAGCCGCAGCAAGGTGACGGCGTTCCTGCCCAACCGAAATACACGC
CAGCTAGTGAAGATTGGAGAAGTGGGAAACCTTGGTGTTGGCGAACGTAT
ATTCTCGGTGCGCTACATCGGGGAAACCGCGTATGTCGTGACGTTCCGCC
AAGTTGATCCGCTGTACATCATCGACCTGTCGAACCCGCGCGCGATGCGC
GTGACGGGTGAGCTTAAGATCCCAGGCTTCAGCTCATACTTACACCCAGT
CGGGCCGGGGCGTCTCCTTGGAGTCGGACAGGAGGCCAGTCTTTCTGGTC
GCACGCTAGGCGCGAAGGTGTCGCTCTTCGATGTGAGCGACAAGACGAAT
CCTCTTGAGCTCGCCACGTGGACTATAAGCGGCAGCAGCACGGAAGCACA
GTGGGATCACCGCGCGTTCCTGTACTGGCCCCGCGAGCGCGTTGCCGTGT
TGCCGGTGAATGTGTATTTGTACTCGCAGCGATTCACCGGCGCAATCGTG
CTCAACATATCCGATTCGACCATTACAGAGCGCGGCCGAGTGACGCACAA
CACAACCGGGCTGAACTGGTGGAGTTGGTGGCAGCGCAGCATCAAACGTA
ATGCGATCATCGGCAGGGAGCACCTTTGGTCCATGTCGGAGTCGCTTCTT
CAGGTCAACAATCTGAATCAGCTCAGCGAGGTCGAGGGTCAAGTCTCGAT
TGCTTAG

Coding sequence (CDS) from alignment at tig00000106_pilon:1402198..1404204-

>Gchil3047.t1 ID=Gchil3047.t1|Name=Gchil3047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2007bp|location=Sequence derived from alignment at tig00000106_pilon:1402198..1404204- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTTGTTTACATCATTTTCCGTTGCTTTCCTCCTAATTGCCCTAGC
AAATGGCGCCAATGGCAACCTTATTAACAAGTTTGGCAACTGCCCAGAGC
TCAACAACTACTACATCAACCGTGCCGTGAACTTGGTCGGTCCATATGGA
CTTAATTCCTACAACGCATACACCCGCAGTCGAAACCCAGAAGGAGATGT
GGACCCTGGAACGCCAGGCGGTCCCGCCGGGCTTCCCCTCCACAAGCCGT
TCGCTGATCCGCAACGCGTTGCCGGCGGTAATCTTACCGATGCTGATCGC
AACACCAACGCTGATGACTCCGAGGAAGATAATGGTCTGATCCCGGGTGT
CGACTATTCGACAACTAACGTCCAGGTCACTGGTGTCGATGAACCGGATA
TCATCAAGACAGATGGCCGCCGAGTGTTCACGGTGAGCGGCAACACGTTC
TCTGTTGTGGAGGTGCTGGAGGGCGGAAAGACCGGCCGACGTGTCGGCAG
ATTGGAGCTGCCGTCGCGCCCACAGGATATGTTGATTCAGGGCGATTTCT
TACTTGCACTAGGGGAAGTAGGAAATTACAGACGCCCGGTGCACGTTCGC
TACAAGACGGATCCGTCGCAAGGAGAGCAGGCAACCGTTGTATATCAGAT
TCACGTCAACGGTGGTACGCCACGCCTGGTGTCCACGCTTTACCTCGAGG
GCAACTATATCAGATCGCGCGAGGTCGATGGTGTCGTCCGCCTGGTGTTG
CGCTTCCGCCCGCTGTCGTCCGTCTGGCTGTACTACCCAACGAGAAACGT
GCCAGCCTCGCAGACACAGAAGTGGAACCGTGAGATCATCCAGTATTCTC
GACCTGGGAACTGGCTGCCGACGTACCGGCTGCAGCGCAATGGCCGCGAG
CAATTCGGCGTGTATGCGACGTGTAGTGATATCTACTACTCGCCGAACGT
CTTTGCTGGCTTCAACCTCCTCACGGTCGTCACGCTGCCCATTGCGGGCT
TCTTAGAGCCTTCTAGTTCGGCAGCCGTTGTGTCCGACGCCGACACAGTG
TACGCTACGGAGAAGTCCTTGTTCGTCACGACTAACGAGATCCGCTTCAA
CGATGTGGCAACGAACTCGGTGCGCTGGGGTTCCGATTACCAAACTGCAA
TCCACCACTTTGCGCTGTCAGACGCAGGCGCGTCGTACGTGGCGAGCGGT
GCCGTGAGCGGCAGCACCATCAACCAGTTTGCAATGCATGAGTGGCACGA
CACGTTCTTCATCGCGACGACGGATGGCGCGAGATGGTGGAGTTCTCGCG
ATCTGAGCCGCAGCAAGGTGACGGCGTTCCTGCCCAACCGAAATACACGC
CAGCTAGTGAAGATTGGAGAAGTGGGAAACCTTGGTGTTGGCGAACGTAT
ATTCTCGGTGCGCTACATCGGGGAAACCGCGTATGTCGTGACGTTCCGCC
AAGTTGATCCGCTGTACATCATCGACCTGTCGAACCCGCGCGCGATGCGC
GTGACGGGTGAGCTTAAGATCCCAGGCTTCAGCTCATACTTACACCCAGT
CGGGCCGGGGCGTCTCCTTGGAGTCGGACAGGAGGCCAGTCTTTCTGGTC
GCACGCTAGGCGCGAAGGTGTCGCTCTTCGATGTGAGCGACAAGACGAAT
CCTCTTGAGCTCGCCACGTGGACTATAAGCGGCAGCAGCACGGAAGCACA
GTGGGATCACCGCGCGTTCCTGTACTGGCCCCGCGAGCGCGTTGCCGTGT
TGCCGGTGAATGTGTATTTGTACTCGCAGCGATTCACCGGCGCAATCGTG
CTCAACATATCCGATTCGACCATTACAGAGCGCGGCCGAGTGACGCACAA
CACAACCGGGCTGAACTGGTGGAGTTGGTGGCAGCGCAGCATCAAACGTA
ATGCGATCATCGGCAGGGAGCACCTTTGGTCCATGTCGGAGTCGCTTCTT
CAGGTCAACAATCTGAATCAGCTCAGCGAGGTCGAGGGTCAAGTCTCGAT
TGCTTAG