Gchil3046.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3046.t1
Unique NameGchil3046.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1333934..1335370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008617443.1
Preferred nameMSS116
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K17679
GOsGO:0000166,GO:0000372,GO:0000373,GO:0000375,GO:0000376,GO:0000377,GO:0000959,GO:0000963,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006354,GO:0006390,GO:0006392,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019438,GO:0030554,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033592,GO:0034337,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0090615,GO:0097159,GO:0097367,GO:0097617,GO:0097659,GO:0140053,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Evalue5.48e-74
EggNOG OGsCOG0513@1|root,KOG0342@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
COG categoryJKL
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3046Gchil3046Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1333934..1335370 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3046.t1.start1Gchil3046.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1333934..1333936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3046.t1.CDS1Gchil3046.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1333934..1335370 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3046.t1.exon1Gchil3046.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1333934..1335370 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3046.t1.stop1Gchil3046.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1335368..1335370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3046.t1Gchil3046.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1333934..1335370 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3046.t1 ID=Gchil3046.t1|Name=Gchil3046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=479bp
MSTIQERTIPVALTGSDILASVRSAVGRSLAFLLPALHRTITEPQSATSV
LVLVATRHVARLTMNVVRSLLSFSDQHTARMASGGTKVRIDLELMEENRN
PTVIVATPGRLLDHLTNESSGFKEALQQIKVLILDEADRLMEAPIVEEVE
KILQHLPAPEQRQTMVFASNLRGDFKAFAALALRPNYEFMDFDEDQLATQ
KVAQSLLVTRLQDQSAALAVLLMQCMKLSDYKIVVFFTTARHTQFYAQLF
EAMGRSVFVLHSRLSEAERENVCSAFREKQNVILFTSDMVTPNLQFAHVS
SVIQVGLPIDRAQYMHRIEKTSHAEKGGSAVVLLAPFEKERFKTQVSGLS
IQQIPKLPKDMMAAMQGAVEGSIKKVPLYVKVNGYRAYLGFYHSKAEVLG
KPREEMVKIAAEWALQVAMLSEIPSISKRSAMLMGIDERLVNIAPEYPRR
GRFRGRGRGFVHRGRGGHRGQSREDTAR*
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spliced messenger RNA

>Gchil3046.t1 ID=Gchil3046.t1|Name=Gchil3046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000106_pilon:1333934..1335370+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACCATTCAGGAGCGAACAATACCTGTTGCGCTTACGGGGTCGGA
TATTTTAGCCAGCGTGCGATCCGCAGTAGGCAGGTCATTGGCATTTCTTC
TCCCGGCCTTGCATCGTACAATAACTGAACCACAGTCTGCGACATCTGTC
CTCGTTCTTGTTGCGACGAGGCATGTCGCCCGTCTAACCATGAATGTCGT
CCGATCCCTTTTATCTTTCTCAGACCAGCATACAGCTCGCATGGCCTCAG
GAGGAACCAAAGTCAGGATAGATCTGGAACTTATGGAAGAGAACAGGAAC
CCGACTGTGATCGTCGCAACCCCAGGTCGCTTGCTCGACCATCTTACAAA
TGAATCTTCAGGCTTCAAGGAGGCGCTGCAGCAGATTAAGGTACTCATAC
TGGACGAAGCCGACCGCCTAATGGAGGCACCTATCGTGGAAGAAGTCGAA
AAGATCCTACAGCATTTGCCAGCTCCCGAACAGCGACAGACCATGGTATT
TGCCTCAAACCTTCGCGGCGATTTTAAAGCATTTGCTGCACTTGCTCTCC
GCCCAAACTACGAGTTCATGGATTTTGATGAGGATCAGCTCGCAACACAG
AAAGTTGCACAATCATTGCTCGTGACAAGACTTCAAGACCAATCTGCAGC
ACTAGCGGTGTTGCTGATGCAATGCATGAAACTCTCAGACTACAAAATCG
TGGTCTTCTTTACGACAGCCCGTCACACGCAGTTTTACGCTCAATTGTTC
GAGGCGATGGGTCGCTCGGTGTTCGTTCTACATTCCCGACTGAGCGAAGC
CGAACGCGAAAATGTCTGTTCCGCATTCCGAGAGAAACAAAACGTCATTC
TCTTCACATCTGACATGGTTACACCAAACCTTCAATTCGCTCATGTATCA
AGCGTCATTCAAGTTGGTCTCCCAATCGATCGAGCGCAGTATATGCATCG
AATTGAAAAGACTTCTCATGCAGAAAAAGGCGGGAGTGCGGTTGTACTTC
TAGCTCCTTTTGAGAAGGAGCGATTCAAGACTCAAGTGTCTGGCCTATCA
ATTCAACAGATCCCAAAGCTTCCGAAAGATATGATGGCTGCCATGCAGGG
CGCAGTTGAGGGGAGCATCAAGAAGGTTCCACTGTATGTCAAAGTGAATG
GTTACCGTGCCTACTTAGGTTTCTATCATTCGAAGGCCGAAGTTCTCGGC
AAGCCTCGCGAGGAAATGGTCAAGATCGCTGCGGAATGGGCTCTTCAGGT
CGCCATGTTGTCTGAGATTCCCTCTATTTCTAAGCGATCGGCGATGCTGA
TGGGGATTGATGAGCGGCTTGTTAATATTGCACCCGAATATCCAAGACGC
GGACGATTCCGTGGCCGTGGGCGAGGCTTCGTGCACCGAGGTCGCGGAGG
GCATCGAGGCCAGAGCAGGGAAGACACCGCCCGCTGA
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protein sequence of Gchil3046.t1

>Gchil3046.t1 ID=Gchil3046.t1|Name=Gchil3046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=479bp
MSTIQERTIPVALTGSDILASVRSAVGRSLAFLLPALHRTITEPQSATSV
LVLVATRHVARLTMNVVRSLLSFSDQHTARMASGGTKVRIDLELMEENRN
PTVIVATPGRLLDHLTNESSGFKEALQQIKVLILDEADRLMEAPIVEEVE
KILQHLPAPEQRQTMVFASNLRGDFKAFAALALRPNYEFMDFDEDQLATQ
KVAQSLLVTRLQDQSAALAVLLMQCMKLSDYKIVVFFTTARHTQFYAQLF
EAMGRSVFVLHSRLSEAERENVCSAFREKQNVILFTSDMVTPNLQFAHVS
SVIQVGLPIDRAQYMHRIEKTSHAEKGGSAVVLLAPFEKERFKTQVSGLS
IQQIPKLPKDMMAAMQGAVEGSIKKVPLYVKVNGYRAYLGFYHSKAEVLG
KPREEMVKIAAEWALQVAMLSEIPSISKRSAMLMGIDERLVNIAPEYPRR
GRFRGRGRGFVHRGRGGHRGQSREDTAR*
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mRNA from alignment at tig00000106_pilon:1333934..1335370+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3046.t1 ID=Gchil3046.t1|Name=Gchil3046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000106_pilon:1333934..1335370+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTACCATTCAGGAGCGAACAATACCTGTTGCGCTTACGGGGTCGGA
TATTTTAGCCAGCGTGCGATCCGCAGTAGGCAGGTCATTGGCATTTCTTC
TCCCGGCCTTGCATCGTACAATAACTGAACCACAGTCTGCGACATCTGTC
CTCGTTCTTGTTGCGACGAGGCATGTCGCCCGTCTAACCATGAATGTCGT
CCGATCCCTTTTATCTTTCTCAGACCAGCATACAGCTCGCATGGCCTCAG
GAGGAACCAAAGTCAGGATAGATCTGGAACTTATGGAAGAGAACAGGAAC
CCGACTGTGATCGTCGCAACCCCAGGTCGCTTGCTCGACCATCTTACAAA
TGAATCTTCAGGCTTCAAGGAGGCGCTGCAGCAGATTAAGGTACTCATAC
TGGACGAAGCCGACCGCCTAATGGAGGCACCTATCGTGGAAGAAGTCGAA
AAGATCCTACAGCATTTGCCAGCTCCCGAACAGCGACAGACCATGGTATT
TGCCTCAAACCTTCGCGGCGATTTTAAAGCATTTGCTGCACTTGCTCTCC
GCCCAAACTACGAGTTCATGGATTTTGATGAGGATCAGCTCGCAACACAG
AAAGTTGCACAATCATTGCTCGTGACAAGACTTCAAGACCAATCTGCAGC
ACTAGCGGTGTTGCTGATGCAATGCATGAAACTCTCAGACTACAAAATCG
TGGTCTTCTTTACGACAGCCCGTCACACGCAGTTTTACGCTCAATTGTTC
GAGGCGATGGGTCGCTCGGTGTTCGTTCTACATTCCCGACTGAGCGAAGC
CGAACGCGAAAATGTCTGTTCCGCATTCCGAGAGAAACAAAACGTCATTC
TCTTCACATCTGACATGGTTACACCAAACCTTCAATTCGCTCATGTATCA
AGCGTCATTCAAGTTGGTCTCCCAATCGATCGAGCGCAGTATATGCATCG
AATTGAAAAGACTTCTCATGCAGAAAAAGGCGGGAGTGCGGTTGTACTTC
TAGCTCCTTTTGAGAAGGAGCGATTCAAGACTCAAGTGTCTGGCCTATCA
ATTCAACAGATCCCAAAGCTTCCGAAAGATATGATGGCTGCCATGCAGGG
CGCAGTTGAGGGGAGCATCAAGAAGGTTCCACTGTATGTCAAAGTGAATG
GTTACCGTGCCTACTTAGGTTTCTATCATTCGAAGGCCGAAGTTCTCGGC
AAGCCTCGCGAGGAAATGGTCAAGATCGCTGCGGAATGGGCTCTTCAGGT
CGCCATGTTGTCTGAGATTCCCTCTATTTCTAAGCGATCGGCGATGCTGA
TGGGGATTGATGAGCGGCTTGTTAATATTGCACCCGAATATCCAAGACGC
GGACGATTCCGTGGCCGTGGGCGAGGCTTCGTGCACCGAGGTCGCGGAGG
GCATCGAGGCCAGAGCAGGGAAGACACCGCCCGCTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1333934..1335370+

>Gchil3046.t1 ID=Gchil3046.t1|Name=Gchil3046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000106_pilon:1333934..1335370+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTACCATTCAGGAGCGAACAATACCTGTTGCGCTTACGGGGTCGGA
TATTTTAGCCAGCGTGCGATCCGCAGTAGGCAGGTCATTGGCATTTCTTC
TCCCGGCCTTGCATCGTACAATAACTGAACCACAGTCTGCGACATCTGTC
CTCGTTCTTGTTGCGACGAGGCATGTCGCCCGTCTAACCATGAATGTCGT
CCGATCCCTTTTATCTTTCTCAGACCAGCATACAGCTCGCATGGCCTCAG
GAGGAACCAAAGTCAGGATAGATCTGGAACTTATGGAAGAGAACAGGAAC
CCGACTGTGATCGTCGCAACCCCAGGTCGCTTGCTCGACCATCTTACAAA
TGAATCTTCAGGCTTCAAGGAGGCGCTGCAGCAGATTAAGGTACTCATAC
TGGACGAAGCCGACCGCCTAATGGAGGCACCTATCGTGGAAGAAGTCGAA
AAGATCCTACAGCATTTGCCAGCTCCCGAACAGCGACAGACCATGGTATT
TGCCTCAAACCTTCGCGGCGATTTTAAAGCATTTGCTGCACTTGCTCTCC
GCCCAAACTACGAGTTCATGGATTTTGATGAGGATCAGCTCGCAACACAG
AAAGTTGCACAATCATTGCTCGTGACAAGACTTCAAGACCAATCTGCAGC
ACTAGCGGTGTTGCTGATGCAATGCATGAAACTCTCAGACTACAAAATCG
TGGTCTTCTTTACGACAGCCCGTCACACGCAGTTTTACGCTCAATTGTTC
GAGGCGATGGGTCGCTCGGTGTTCGTTCTACATTCCCGACTGAGCGAAGC
CGAACGCGAAAATGTCTGTTCCGCATTCCGAGAGAAACAAAACGTCATTC
TCTTCACATCTGACATGGTTACACCAAACCTTCAATTCGCTCATGTATCA
AGCGTCATTCAAGTTGGTCTCCCAATCGATCGAGCGCAGTATATGCATCG
AATTGAAAAGACTTCTCATGCAGAAAAAGGCGGGAGTGCGGTTGTACTTC
TAGCTCCTTTTGAGAAGGAGCGATTCAAGACTCAAGTGTCTGGCCTATCA
ATTCAACAGATCCCAAAGCTTCCGAAAGATATGATGGCTGCCATGCAGGG
CGCAGTTGAGGGGAGCATCAAGAAGGTTCCACTGTATGTCAAAGTGAATG
GTTACCGTGCCTACTTAGGTTTCTATCATTCGAAGGCCGAAGTTCTCGGC
AAGCCTCGCGAGGAAATGGTCAAGATCGCTGCGGAATGGGCTCTTCAGGT
CGCCATGTTGTCTGAGATTCCCTCTATTTCTAAGCGATCGGCGATGCTGA
TGGGGATTGATGAGCGGCTTGTTAATATTGCACCCGAATATCCAAGACGC
GGACGATTCCGTGGCCGTGGGCGAGGCTTCGTGCACCGAGGTCGCGGAGG
GCATCGAGGCCAGAGCAGGGAAGACACCGCCCGCTGA
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