Gchil3045.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3045.t1
Unique NameGchil3045.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length179
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1330686..1331222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705874.1
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K11111
KEGG ModuleM00424
Evalue3.07e-13
EggNOG OGs2E4ZS@1|root,2SBUF@2759|Eukaryota
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryB
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3045Gchil3045Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1330686..1331222 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3045.t1.start1Gchil3045.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1330686..1330688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3045.t1.CDS1Gchil3045.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1330686..1331222 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3045.t1.exon1Gchil3045.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1330686..1331222 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3045.t1.stop1Gchil3045.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1331220..1331222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3045.t1Gchil3045.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1330686..1331222 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3045.t1 ID=Gchil3045.t1|Name=Gchil3045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=179bp
MTSSATVPFNSTVKITDKNVSKPTRKKGRRDCYTRFSALEEAHLLEGVRK
YGAGKWKKILTCYEFHWKRTAVDLKDKYRNIIRAQEREKRKRLERMGVSK
QEAGTNDDHLANVPLRSGMVFQVNSVRGNMNESRLPRAGYNVQNTSEDSK
SCKREKRIEAPSAMKLARLLCYPEGESY*
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spliced messenger RNA

>Gchil3045.t1 ID=Gchil3045.t1|Name=Gchil3045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000106_pilon:1330686..1331222+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCAAGTGCGACTGTGCCATTCAACTCAACCGTGAAAATTACTGA
CAAAAATGTGTCGAAACCGACGCGAAAAAAAGGCAGACGGGATTGTTACA
CACGTTTCTCCGCTTTAGAAGAGGCTCATCTCTTGGAAGGCGTGAGGAAG
TATGGGGCAGGAAAATGGAAGAAGATCCTCACCTGCTATGAGTTTCATTG
GAAACGTACTGCTGTTGATTTGAAAGACAAGTATCGAAATATTATTCGGG
CACAGGAAAGAGAGAAGAGGAAACGACTGGAGAGAATGGGTGTTTCAAAG
CAAGAGGCTGGAACCAATGATGATCATTTGGCTAATGTTCCGCTCAGAAG
TGGAATGGTTTTCCAGGTGAACAGTGTAAGAGGTAACATGAACGAATCTC
GGCTTCCAAGAGCCGGCTACAACGTTCAGAACACAAGTGAAGATTCAAAG
TCTTGTAAAAGAGAAAAGCGTATCGAGGCACCTTCTGCAATGAAGCTTGC
GAGGCTGCTATGTTACCCGGAAGGCGAAAGCTACTAG
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protein sequence of Gchil3045.t1

>Gchil3045.t1 ID=Gchil3045.t1|Name=Gchil3045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=179bp
MTSSATVPFNSTVKITDKNVSKPTRKKGRRDCYTRFSALEEAHLLEGVRK
YGAGKWKKILTCYEFHWKRTAVDLKDKYRNIIRAQEREKRKRLERMGVSK
QEAGTNDDHLANVPLRSGMVFQVNSVRGNMNESRLPRAGYNVQNTSEDSK
SCKREKRIEAPSAMKLARLLCYPEGESY*
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mRNA from alignment at tig00000106_pilon:1330686..1331222+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3045.t1 ID=Gchil3045.t1|Name=Gchil3045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp|location=Sequence derived from alignment at tig00000106_pilon:1330686..1331222+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCAAGTGCGACTGTGCCATTCAACTCAACCGTGAAAATTACTGA
CAAAAATGTGTCGAAACCGACGCGAAAAAAAGGCAGACGGGATTGTTACA
CACGTTTCTCCGCTTTAGAAGAGGCTCATCTCTTGGAAGGCGTGAGGAAG
TATGGGGCAGGAAAATGGAAGAAGATCCTCACCTGCTATGAGTTTCATTG
GAAACGTACTGCTGTTGATTTGAAAGACAAGTATCGAAATATTATTCGGG
CACAGGAAAGAGAGAAGAGGAAACGACTGGAGAGAATGGGTGTTTCAAAG
CAAGAGGCTGGAACCAATGATGATCATTTGGCTAATGTTCCGCTCAGAAG
TGGAATGGTTTTCCAGGTGAACAGTGTAAGAGGTAACATGAACGAATCTC
GGCTTCCAAGAGCCGGCTACAACGTTCAGAACACAAGTGAAGATTCAAAG
TCTTGTAAAAGAGAAAAGCGTATCGAGGCACCTTCTGCAATGAAGCTTGC
GAGGCTGCTATGTTACCCGGAAGGCGAAAGCTACTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:1330686..1331222+

>Gchil3045.t1 ID=Gchil3045.t1|Name=Gchil3045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=537bp|location=Sequence derived from alignment at tig00000106_pilon:1330686..1331222+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCAAGTGCGACTGTGCCATTCAACTCAACCGTGAAAATTACTGA
CAAAAATGTGTCGAAACCGACGCGAAAAAAAGGCAGACGGGATTGTTACA
CACGTTTCTCCGCTTTAGAAGAGGCTCATCTCTTGGAAGGCGTGAGGAAG
TATGGGGCAGGAAAATGGAAGAAGATCCTCACCTGCTATGAGTTTCATTG
GAAACGTACTGCTGTTGATTTGAAAGACAAGTATCGAAATATTATTCGGG
CACAGGAAAGAGAGAAGAGGAAACGACTGGAGAGAATGGGTGTTTCAAAG
CAAGAGGCTGGAACCAATGATGATCATTTGGCTAATGTTCCGCTCAGAAG
TGGAATGGTTTTCCAGGTGAACAGTGTAAGAGGTAACATGAACGAATCTC
GGCTTCCAAGAGCCGGCTACAACGTTCAGAACACAAGTGAAGATTCAAAG
TCTTGTAAAAGAGAAAAGCGTATCGAGGCACCTTCTGCAATGAAGCTTGC
GAGGCTGCTATGTTACCCGGAAGGCGAAAGCTACTAG
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