Gchil3043.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3043.t1
Unique NameGchil3043.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1323011..1324546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009037794.1
PFAMsSel1
Max annot lvl2759|Eukaryota
KEGG koko:K07126,ko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Evalue4.25e-10
EggNOG OGsCOG0790@1|root,KOG1550@2759|Eukaryota
DescriptionERAD pathway
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3043Gchil3043Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1323011..1324546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3043.t1.stop1Gchil3043.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1323011..1323013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3043.t1.CDS1Gchil3043.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1323011..1324546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3043.t1.exon1Gchil3043.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1323011..1324546 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3043.t1.start1Gchil3043.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1324544..1324546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3043.t1Gchil3043.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1323011..1324546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3043.t1 ID=Gchil3043.t1|Name=Gchil3043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=512bp
MASSTSLSLTPPPRAARPRPASKPTPMSKSESLRDSVHSLVDGIVDDAVT
AAMLKAEKARVQSLINNLVTRVQSDASATKPQPPTMQGVAIGDHRLRRIA
HTPLTWTQTMDSLTLNIHVPDHVRKEHICIDFDSNSIGINIRSPGLAQPY
FVLDRQFVSKIDVAGCMWGLEAASSSRKLIVEVEKANVQWWARLFTTDNV
TDYSIVAQNDILLNGRALDTVAETTTITPSSAKSVVASEAQMDGLVEKSP
EKSETVEQRLKQTVESVVDDIVEEASNATVPSQPQPSREQQSPRPTTRHK
MLTRADLPKIVDQYRTAFEKGGPNSIESALQLATFYHHGIGVEQNDAEAA
RLYRHALENGALDPSAAFQLGLIYNQGAPGIEPNLEEAVRWWKLSAGLGN
PVAMFNLGVMFLNGSGCDLDPESAQQWFERANALNPQLKPPQLSKAQFAE
RLATASKLRRERMRRELPPEEKKRRKEQALQKVKYVAYGTTAVAGIGATM
IAFRYWWRNRL*
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spliced messenger RNA

>Gchil3043.t1 ID=Gchil3043.t1|Name=Gchil3043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000106_pilon:1323011..1324546- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTAGCACCTCGCTATCGCTCACTCCGCCTCCACGCGCTGCGAG
ACCGCGTCCTGCATCTAAACCCACCCCCATGTCAAAGTCCGAGTCGTTGC
GAGACTCCGTTCACAGCCTCGTTGACGGCATTGTCGATGATGCCGTCACT
GCCGCAATGCTGAAGGCCGAAAAGGCCAGGGTGCAGAGTCTTATAAACAA
CCTTGTAACCCGTGTTCAGTCAGATGCCAGTGCTACAAAGCCTCAACCAC
CCACCATGCAGGGGGTAGCCATTGGAGATCACCGTCTCAGACGTATTGCG
CATACACCGCTCACATGGACTCAAACAATGGATTCTCTAACTCTCAACAT
TCATGTTCCTGATCACGTGCGAAAAGAACACATTTGCATTGACTTTGATT
CTAACTCTATTGGTATTAACATTCGTTCACCCGGCCTTGCCCAGCCCTAT
TTTGTTCTTGACCGCCAGTTTGTTAGCAAAATTGATGTTGCCGGCTGTAT
GTGGGGGTTAGAGGCAGCATCTTCATCTCGAAAGCTCATCGTCGAGGTTG
AGAAGGCAAACGTGCAATGGTGGGCAAGATTGTTCACTACAGATAATGTA
ACGGACTATTCAATAGTAGCGCAGAATGACATACTTCTCAATGGCCGCGC
CTTGGATACTGTCGCCGAAACAACAACAATAACCCCATCTTCGGCGAAAA
GTGTCGTCGCGTCTGAGGCGCAGATGGATGGCCTAGTTGAGAAATCACCA
GAAAAAAGCGAAACCGTGGAACAAAGATTGAAACAGACTGTTGAATCAGT
GGTCGACGATATTGTCGAAGAAGCATCCAACGCTACTGTGCCATCTCAAC
CTCAACCTTCGAGAGAGCAGCAAAGTCCACGACCGACCACGCGTCACAAA
ATGCTGACACGAGCGGATCTTCCCAAAATCGTCGATCAGTATCGTACCGC
TTTTGAGAAGGGTGGACCAAACTCGATTGAATCCGCTTTGCAACTTGCTA
CCTTCTATCATCATGGTATTGGCGTCGAGCAAAACGATGCCGAAGCCGCA
CGTTTGTATCGTCACGCATTGGAAAATGGTGCGCTAGATCCGTCCGCAGC
CTTTCAACTAGGTTTGATATACAACCAGGGCGCTCCGGGCATAGAACCCA
ACCTTGAGGAAGCAGTGCGTTGGTGGAAACTTTCGGCTGGTCTTGGAAAC
CCAGTCGCAATGTTTAACCTAGGTGTGATGTTTCTCAATGGATCTGGGTG
CGACCTTGACCCTGAATCAGCCCAACAGTGGTTTGAGCGGGCGAATGCGC
TCAACCCGCAGCTGAAGCCCCCGCAGCTGTCCAAAGCTCAGTTTGCGGAG
AGATTGGCCACTGCGTCCAAGCTCAGAAGGGAACGCATGAGGCGCGAATT
GCCCCCCGAAGAGAAGAAGCGACGAAAGGAACAGGCGTTGCAGAAGGTAA
AATACGTTGCATATGGAACGACGGCTGTTGCCGGTATCGGCGCCACAATG
ATCGCCTTCAGATATTGGTGGCGCAACCGACTTTAG
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protein sequence of Gchil3043.t1

>Gchil3043.t1 ID=Gchil3043.t1|Name=Gchil3043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=512bp
MASSTSLSLTPPPRAARPRPASKPTPMSKSESLRDSVHSLVDGIVDDAVT
AAMLKAEKARVQSLINNLVTRVQSDASATKPQPPTMQGVAIGDHRLRRIA
HTPLTWTQTMDSLTLNIHVPDHVRKEHICIDFDSNSIGINIRSPGLAQPY
FVLDRQFVSKIDVAGCMWGLEAASSSRKLIVEVEKANVQWWARLFTTDNV
TDYSIVAQNDILLNGRALDTVAETTTITPSSAKSVVASEAQMDGLVEKSP
EKSETVEQRLKQTVESVVDDIVEEASNATVPSQPQPSREQQSPRPTTRHK
MLTRADLPKIVDQYRTAFEKGGPNSIESALQLATFYHHGIGVEQNDAEAA
RLYRHALENGALDPSAAFQLGLIYNQGAPGIEPNLEEAVRWWKLSAGLGN
PVAMFNLGVMFLNGSGCDLDPESAQQWFERANALNPQLKPPQLSKAQFAE
RLATASKLRRERMRRELPPEEKKRRKEQALQKVKYVAYGTTAVAGIGATM
IAFRYWWRNRL*
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mRNA from alignment at tig00000106_pilon:1323011..1324546-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3043.t1 ID=Gchil3043.t1|Name=Gchil3043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000106_pilon:1323011..1324546- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCTAGCACCTCGCTATCGCTCACTCCGCCTCCACGCGCTGCGAG
ACCGCGTCCTGCATCTAAACCCACCCCCATGTCAAAGTCCGAGTCGTTGC
GAGACTCCGTTCACAGCCTCGTTGACGGCATTGTCGATGATGCCGTCACT
GCCGCAATGCTGAAGGCCGAAAAGGCCAGGGTGCAGAGTCTTATAAACAA
CCTTGTAACCCGTGTTCAGTCAGATGCCAGTGCTACAAAGCCTCAACCAC
CCACCATGCAGGGGGTAGCCATTGGAGATCACCGTCTCAGACGTATTGCG
CATACACCGCTCACATGGACTCAAACAATGGATTCTCTAACTCTCAACAT
TCATGTTCCTGATCACGTGCGAAAAGAACACATTTGCATTGACTTTGATT
CTAACTCTATTGGTATTAACATTCGTTCACCCGGCCTTGCCCAGCCCTAT
TTTGTTCTTGACCGCCAGTTTGTTAGCAAAATTGATGTTGCCGGCTGTAT
GTGGGGGTTAGAGGCAGCATCTTCATCTCGAAAGCTCATCGTCGAGGTTG
AGAAGGCAAACGTGCAATGGTGGGCAAGATTGTTCACTACAGATAATGTA
ACGGACTATTCAATAGTAGCGCAGAATGACATACTTCTCAATGGCCGCGC
CTTGGATACTGTCGCCGAAACAACAACAATAACCCCATCTTCGGCGAAAA
GTGTCGTCGCGTCTGAGGCGCAGATGGATGGCCTAGTTGAGAAATCACCA
GAAAAAAGCGAAACCGTGGAACAAAGATTGAAACAGACTGTTGAATCAGT
GGTCGACGATATTGTCGAAGAAGCATCCAACGCTACTGTGCCATCTCAAC
CTCAACCTTCGAGAGAGCAGCAAAGTCCACGACCGACCACGCGTCACAAA
ATGCTGACACGAGCGGATCTTCCCAAAATCGTCGATCAGTATCGTACCGC
TTTTGAGAAGGGTGGACCAAACTCGATTGAATCCGCTTTGCAACTTGCTA
CCTTCTATCATCATGGTATTGGCGTCGAGCAAAACGATGCCGAAGCCGCA
CGTTTGTATCGTCACGCATTGGAAAATGGTGCGCTAGATCCGTCCGCAGC
CTTTCAACTAGGTTTGATATACAACCAGGGCGCTCCGGGCATAGAACCCA
ACCTTGAGGAAGCAGTGCGTTGGTGGAAACTTTCGGCTGGTCTTGGAAAC
CCAGTCGCAATGTTTAACCTAGGTGTGATGTTTCTCAATGGATCTGGGTG
CGACCTTGACCCTGAATCAGCCCAACAGTGGTTTGAGCGGGCGAATGCGC
TCAACCCGCAGCTGAAGCCCCCGCAGCTGTCCAAAGCTCAGTTTGCGGAG
AGATTGGCCACTGCGTCCAAGCTCAGAAGGGAACGCATGAGGCGCGAATT
GCCCCCCGAAGAGAAGAAGCGACGAAAGGAACAGGCGTTGCAGAAGGTAA
AATACGTTGCATATGGAACGACGGCTGTTGCCGGTATCGGCGCCACAATG
ATCGCCTTCAGATATTGGTGGCGCAACCGACTTTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:1323011..1324546-

>Gchil3043.t1 ID=Gchil3043.t1|Name=Gchil3043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1536bp|location=Sequence derived from alignment at tig00000106_pilon:1323011..1324546- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCTAGCACCTCGCTATCGCTCACTCCGCCTCCACGCGCTGCGAG
ACCGCGTCCTGCATCTAAACCCACCCCCATGTCAAAGTCCGAGTCGTTGC
GAGACTCCGTTCACAGCCTCGTTGACGGCATTGTCGATGATGCCGTCACT
GCCGCAATGCTGAAGGCCGAAAAGGCCAGGGTGCAGAGTCTTATAAACAA
CCTTGTAACCCGTGTTCAGTCAGATGCCAGTGCTACAAAGCCTCAACCAC
CCACCATGCAGGGGGTAGCCATTGGAGATCACCGTCTCAGACGTATTGCG
CATACACCGCTCACATGGACTCAAACAATGGATTCTCTAACTCTCAACAT
TCATGTTCCTGATCACGTGCGAAAAGAACACATTTGCATTGACTTTGATT
CTAACTCTATTGGTATTAACATTCGTTCACCCGGCCTTGCCCAGCCCTAT
TTTGTTCTTGACCGCCAGTTTGTTAGCAAAATTGATGTTGCCGGCTGTAT
GTGGGGGTTAGAGGCAGCATCTTCATCTCGAAAGCTCATCGTCGAGGTTG
AGAAGGCAAACGTGCAATGGTGGGCAAGATTGTTCACTACAGATAATGTA
ACGGACTATTCAATAGTAGCGCAGAATGACATACTTCTCAATGGCCGCGC
CTTGGATACTGTCGCCGAAACAACAACAATAACCCCATCTTCGGCGAAAA
GTGTCGTCGCGTCTGAGGCGCAGATGGATGGCCTAGTTGAGAAATCACCA
GAAAAAAGCGAAACCGTGGAACAAAGATTGAAACAGACTGTTGAATCAGT
GGTCGACGATATTGTCGAAGAAGCATCCAACGCTACTGTGCCATCTCAAC
CTCAACCTTCGAGAGAGCAGCAAAGTCCACGACCGACCACGCGTCACAAA
ATGCTGACACGAGCGGATCTTCCCAAAATCGTCGATCAGTATCGTACCGC
TTTTGAGAAGGGTGGACCAAACTCGATTGAATCCGCTTTGCAACTTGCTA
CCTTCTATCATCATGGTATTGGCGTCGAGCAAAACGATGCCGAAGCCGCA
CGTTTGTATCGTCACGCATTGGAAAATGGTGCGCTAGATCCGTCCGCAGC
CTTTCAACTAGGTTTGATATACAACCAGGGCGCTCCGGGCATAGAACCCA
ACCTTGAGGAAGCAGTGCGTTGGTGGAAACTTTCGGCTGGTCTTGGAAAC
CCAGTCGCAATGTTTAACCTAGGTGTGATGTTTCTCAATGGATCTGGGTG
CGACCTTGACCCTGAATCAGCCCAACAGTGGTTTGAGCGGGCGAATGCGC
TCAACCCGCAGCTGAAGCCCCCGCAGCTGTCCAAAGCTCAGTTTGCGGAG
AGATTGGCCACTGCGTCCAAGCTCAGAAGGGAACGCATGAGGCGCGAATT
GCCCCCCGAAGAGAAGAAGCGACGAAAGGAACAGGCGTTGCAGAAGGTAA
AATACGTTGCATATGGAACGACGGCTGTTGCCGGTATCGGCGCCACAATG
ATCGCCTTCAGATATTGGTGGCGCAACCGACTTTAG
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