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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005703789.1 |
| PFAMs | RRM_1,RRM_2 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.47e-109 |
| EggNOG OGs | KOG4660@1|root,KOG4660@2759|Eukaryota |
| Description | RNA binding |
| COG category | P |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil3041.t1 ID=Gchil3041.t1|Name=Gchil3041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=854bp MVDQWPSRVAVPTMVHRDDPQGVAGVAALSPQFDLAVSPARRSVPPIGSL SPQRSFLHSFSSPKKHSHLPFSQNPFSQVTPPPPPSIPAADLLAEATHSA ELHSAAATLLDDPSKPLTPDFDLFGLAKLDLGPSVKPTSTSPSNLITPFR STPFDLPFATSPPVSYPITPQSAPPPSTSPRRDAAHPTRCVQLRNIPPGI DDEDLRRLLTKFGPLRDLGAQQRSRGGHGSVLATYYDLRHARAAVRALDS TVQFGRCLDARFQCPVDIRSPFAFAANGHNTAQCANQGTLVVFNLDCSTS AEDIRSLFSSVGDVKEIRATPNKKHHKFVEFYDVRDAERAMHLLNKTEVA GKRIKIEISRPGGRAANMSRGTTQSSKMHSNNSNTLNSAAGLNHQPRNHF GNGPHSHIDVDSFRGSPTRHGVDALSPVPQTSPIRASSPCKHHSIPTSQA AQFAVPSPEVSYDMPSFDRTNPLSPRMASLLTPSGFDATNALSGSFEKSF VPSRSVDGIDVPMLRGLDSLPEPRPLDFQAMYSSEHPEIPRATAKAIPPP VSRKPVRDTYMQALYHSPPRVEDSHTGMISPPGDSATVRNQFGAIGTGNL LRNSASDMDSSPVFHQPPYADAISGNNSIRSNNGNANISRKIGNGSGVER SSNGSHRHSNGPKSNSHGRSYPNQHQVNSKYVLEIVKVRSGEETRTALMI RNIPNKYNQKMLLSTLENEHKGHFDFIYLPIDFKNKCNVGYAFINFTKPE YIEPFYNAFHGKKWGRFNSEKVCEITFARIQGRQQLIAHFQNSSLLLEDP KCRPVIFDSSGRQEEFPIGSHVRTRRGPSSRDTSHRACDSAPPFSPTKHR GRS* back to topspliced messenger RNA >Gchil3041.t1 ID=Gchil3041.t1|Name=Gchil3041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2562bp|location=Sequence derived from alignment at tig00000106_pilon:1316158..1318719+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGACCAGTGGCCCTCGCGCGTAGCCGTCCCAACTATGGTTCACCG CGACGACCCCCAAGGAGTTGCCGGGGTCGCCGCGCTTTCGCCGCAATTCG ACTTGGCTGTGTCGCCTGCGCGCCGTTCCGTACCCCCCATTGGTTCTCTC AGTCCACAACGTTCCTTTCTTCACTCCTTCTCCTCGCCTAAAAAGCACTC TCACCTGCCGTTTTCACAAAACCCCTTCTCACAAGTCACCCCCCCGCCTC CGCCTTCCATCCCTGCCGCAGACTTGTTGGCGGAGGCTACCCATTCGGCA GAGCTGCATTCTGCAGCCGCTACTCTGCTCGATGACCCCTCCAAACCGCT CACCCCCGATTTCGACCTCTTTGGACTCGCCAAGCTCGACCTGGGTCCGT CTGTCAAACCCACTTCCACGTCCCCATCCAATCTCATCACCCCGTTTCGC TCCACCCCATTCGACCTTCCGTTCGCCACCTCGCCGCCGGTATCGTATCC AATAACCCCGCAGTCCGCCCCGCCACCGTCCACATCCCCGCGCCGCGATG CTGCCCATCCTACGCGTTGCGTCCAGCTGCGGAACATTCCGCCCGGCATC GATGATGAGGACCTTCGTCGCTTGCTCACCAAGTTTGGTCCGCTTCGCGA CCTGGGAGCTCAGCAGCGTTCGCGGGGTGGCCATGGCTCGGTTTTAGCTA CTTACTACGACCTACGTCATGCTCGCGCCGCTGTTCGAGCGTTGGACTCT ACAGTGCAGTTTGGCAGATGTTTGGATGCTCGATTTCAGTGCCCGGTCGA TATTCGCTCGCCTTTTGCCTTTGCCGCCAATGGTCACAATACCGCCCAAT GTGCAAATCAGGGTACCCTGGTTGTCTTCAACTTGGATTGTTCCACTTCA GCCGAAGATATTCGCTCCTTGTTTAGCTCCGTTGGCGACGTCAAGGAGAT TCGCGCCACGCCTAATAAGAAGCATCATAAGTTTGTCGAGTTTTATGACG TACGTGATGCAGAACGTGCTATGCATTTGCTCAACAAGACTGAAGTTGCT GGAAAACGAATCAAGATTGAAATTTCAAGACCGGGCGGCAGAGCGGCCAA CATGTCACGCGGAACCACTCAGTCTTCAAAGATGCATTCAAACAACAGCA ACACGCTTAACAGTGCCGCTGGTTTGAATCATCAGCCGAGGAATCATTTT GGCAATGGACCGCATTCTCATATCGATGTCGACTCTTTTCGCGGGTCTCC CACGCGCCACGGAGTGGATGCATTGTCACCTGTACCGCAAACTTCACCGA TTCGCGCGTCGTCACCGTGCAAGCATCACTCAATCCCCACTTCTCAAGCT GCGCAATTCGCCGTTCCCTCCCCAGAGGTCTCTTACGACATGCCCTCTTT TGACCGCACCAATCCTCTTAGCCCCCGCATGGCGTCTCTGCTCACGCCGT CTGGGTTTGATGCCACAAATGCACTGTCTGGTTCGTTTGAGAAGTCGTTT GTACCCTCACGTTCTGTCGATGGGATTGATGTGCCTATGTTGCGTGGTCT GGATTCTCTTCCAGAGCCTCGTCCTTTGGACTTTCAGGCAATGTATTCTT CGGAGCACCCGGAAATCCCCCGTGCTACTGCGAAGGCTATTCCTCCGCCA GTTTCTCGGAAACCTGTTCGGGACACGTACATGCAAGCCCTTTACCACTC CCCACCTCGTGTCGAAGATTCACACACCGGCATGATATCTCCGCCGGGTG ATTCTGCTACGGTTCGCAATCAGTTTGGTGCAATTGGTACTGGGAATCTT CTGCGGAATAGTGCTTCGGACATGGATTCTTCGCCTGTTTTCCACCAGCC ACCTTATGCTGACGCCATAAGTGGGAACAATAGCATCCGTTCGAATAATG GAAACGCGAATATTTCGCGGAAGATTGGAAATGGATCCGGTGTGGAGCGG TCGTCAAACGGCTCACACCGCCATTCCAACGGGCCCAAGTCTAACTCTCA TGGCCGAAGTTATCCCAATCAGCACCAGGTGAATTCCAAATATGTTTTGG AGATTGTTAAAGTACGTTCAGGAGAGGAGACAAGGACGGCTCTTATGATC CGGAACATTCCGAACAAATACAACCAAAAGATGCTATTAAGTACTCTGGA GAACGAACATAAGGGTCATTTTGACTTTATTTATCTCCCCATCGACTTCA AGAATAAGTGCAACGTTGGGTATGCGTTCATCAACTTCACGAAGCCCGAG TATATCGAACCATTTTACAATGCCTTCCATGGAAAGAAGTGGGGTCGTTT CAATTCGGAGAAGGTGTGCGAGATAACTTTTGCACGGATTCAGGGCCGCC AGCAGCTCATTGCCCATTTTCAGAACTCCAGCTTGCTGTTAGAGGACCCT AAGTGCCGACCTGTTATATTCGATTCTTCTGGACGACAGGAAGAGTTTCC GATCGGTTCGCATGTGAGGACTAGGCGTGGTCCATCTAGTCGTGACACTT CTCACCGTGCATGCGACAGTGCGCCCCCGTTTTCGCCGACCAAGCACCGT GGGCGTAGCTGA back to topprotein sequence of Gchil3041.t1 >Gchil3041.t1 ID=Gchil3041.t1|Name=Gchil3041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=854bp
MVDQWPSRVAVPTMVHRDDPQGVAGVAALSPQFDLAVSPARRSVPPIGSL SPQRSFLHSFSSPKKHSHLPFSQNPFSQVTPPPPPSIPAADLLAEATHSA ELHSAAATLLDDPSKPLTPDFDLFGLAKLDLGPSVKPTSTSPSNLITPFR STPFDLPFATSPPVSYPITPQSAPPPSTSPRRDAAHPTRCVQLRNIPPGI DDEDLRRLLTKFGPLRDLGAQQRSRGGHGSVLATYYDLRHARAAVRALDS TVQFGRCLDARFQCPVDIRSPFAFAANGHNTAQCANQGTLVVFNLDCSTS AEDIRSLFSSVGDVKEIRATPNKKHHKFVEFYDVRDAERAMHLLNKTEVA GKRIKIEISRPGGRAANMSRGTTQSSKMHSNNSNTLNSAAGLNHQPRNHF GNGPHSHIDVDSFRGSPTRHGVDALSPVPQTSPIRASSPCKHHSIPTSQA AQFAVPSPEVSYDMPSFDRTNPLSPRMASLLTPSGFDATNALSGSFEKSF VPSRSVDGIDVPMLRGLDSLPEPRPLDFQAMYSSEHPEIPRATAKAIPPP VSRKPVRDTYMQALYHSPPRVEDSHTGMISPPGDSATVRNQFGAIGTGNL LRNSASDMDSSPVFHQPPYADAISGNNSIRSNNGNANISRKIGNGSGVER SSNGSHRHSNGPKSNSHGRSYPNQHQVNSKYVLEIVKVRSGEETRTALMI RNIPNKYNQKMLLSTLENEHKGHFDFIYLPIDFKNKCNVGYAFINFTKPE YIEPFYNAFHGKKWGRFNSEKVCEITFARIQGRQQLIAHFQNSSLLLEDP KCRPVIFDSSGRQEEFPIGSHVRTRRGPSSRDTSHRACDSAPPFSPTKHR GRS* back to topmRNA from alignment at tig00000106_pilon:1316158..1318719+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil3041.t1 ID=Gchil3041.t1|Name=Gchil3041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2562bp|location=Sequence derived from alignment at tig00000106_pilon:1316158..1318719+ (Gracilaria chilensis NLEC103_M9 male) ATGGTCGACCAGTGGCCCTCGCGCGTAGCCGTCCCAACTATGGTTCACCG
CGACGACCCCCAAGGAGTTGCCGGGGTCGCCGCGCTTTCGCCGCAATTCG
ACTTGGCTGTGTCGCCTGCGCGCCGTTCCGTACCCCCCATTGGTTCTCTC
AGTCCACAACGTTCCTTTCTTCACTCCTTCTCCTCGCCTAAAAAGCACTC
TCACCTGCCGTTTTCACAAAACCCCTTCTCACAAGTCACCCCCCCGCCTC
CGCCTTCCATCCCTGCCGCAGACTTGTTGGCGGAGGCTACCCATTCGGCA
GAGCTGCATTCTGCAGCCGCTACTCTGCTCGATGACCCCTCCAAACCGCT
CACCCCCGATTTCGACCTCTTTGGACTCGCCAAGCTCGACCTGGGTCCGT
CTGTCAAACCCACTTCCACGTCCCCATCCAATCTCATCACCCCGTTTCGC
TCCACCCCATTCGACCTTCCGTTCGCCACCTCGCCGCCGGTATCGTATCC
AATAACCCCGCAGTCCGCCCCGCCACCGTCCACATCCCCGCGCCGCGATG
CTGCCCATCCTACGCGTTGCGTCCAGCTGCGGAACATTCCGCCCGGCATC
GATGATGAGGACCTTCGTCGCTTGCTCACCAAGTTTGGTCCGCTTCGCGA
CCTGGGAGCTCAGCAGCGTTCGCGGGGTGGCCATGGCTCGGTTTTAGCTA
CTTACTACGACCTACGTCATGCTCGCGCCGCTGTTCGAGCGTTGGACTCT
ACAGTGCAGTTTGGCAGATGTTTGGATGCTCGATTTCAGTGCCCGGTCGA
TATTCGCTCGCCTTTTGCCTTTGCCGCCAATGGTCACAATACCGCCCAAT
GTGCAAATCAGGGTACCCTGGTTGTCTTCAACTTGGATTGTTCCACTTCA
GCCGAAGATATTCGCTCCTTGTTTAGCTCCGTTGGCGACGTCAAGGAGAT
TCGCGCCACGCCTAATAAGAAGCATCATAAGTTTGTCGAGTTTTATGACG
TACGTGATGCAGAACGTGCTATGCATTTGCTCAACAAGACTGAAGTTGCT
GGAAAACGAATCAAGATTGAAATTTCAAGACCGGGCGGCAGAGCGGCCAA
CATGTCACGCGGAACCACTCAGTCTTCAAAGATGCATTCAAACAACAGCA
ACACGCTTAACAGTGCCGCTGGTTTGAATCATCAGCCGAGGAATCATTTT
GGCAATGGACCGCATTCTCATATCGATGTCGACTCTTTTCGCGGGTCTCC
CACGCGCCACGGAGTGGATGCATTGTCACCTGTACCGCAAACTTCACCGA
TTCGCGCGTCGTCACCGTGCAAGCATCACTCAATCCCCACTTCTCAAGCT
GCGCAATTCGCCGTTCCCTCCCCAGAGGTCTCTTACGACATGCCCTCTTT
TGACCGCACCAATCCTCTTAGCCCCCGCATGGCGTCTCTGCTCACGCCGT
CTGGGTTTGATGCCACAAATGCACTGTCTGGTTCGTTTGAGAAGTCGTTT
GTACCCTCACGTTCTGTCGATGGGATTGATGTGCCTATGTTGCGTGGTCT
GGATTCTCTTCCAGAGCCTCGTCCTTTGGACTTTCAGGCAATGTATTCTT
CGGAGCACCCGGAAATCCCCCGTGCTACTGCGAAGGCTATTCCTCCGCCA
GTTTCTCGGAAACCTGTTCGGGACACGTACATGCAAGCCCTTTACCACTC
CCCACCTCGTGTCGAAGATTCACACACCGGCATGATATCTCCGCCGGGTG
ATTCTGCTACGGTTCGCAATCAGTTTGGTGCAATTGGTACTGGGAATCTT
CTGCGGAATAGTGCTTCGGACATGGATTCTTCGCCTGTTTTCCACCAGCC
ACCTTATGCTGACGCCATAAGTGGGAACAATAGCATCCGTTCGAATAATG
GAAACGCGAATATTTCGCGGAAGATTGGAAATGGATCCGGTGTGGAGCGG
TCGTCAAACGGCTCACACCGCCATTCCAACGGGCCCAAGTCTAACTCTCA
TGGCCGAAGTTATCCCAATCAGCACCAGGTGAATTCCAAATATGTTTTGG
AGATTGTTAAAGTACGTTCAGGAGAGGAGACAAGGACGGCTCTTATGATC
CGGAACATTCCGAACAAATACAACCAAAAGATGCTATTAAGTACTCTGGA
GAACGAACATAAGGGTCATTTTGACTTTATTTATCTCCCCATCGACTTCA
AGAATAAGTGCAACGTTGGGTATGCGTTCATCAACTTCACGAAGCCCGAG
TATATCGAACCATTTTACAATGCCTTCCATGGAAAGAAGTGGGGTCGTTT
CAATTCGGAGAAGGTGTGCGAGATAACTTTTGCACGGATTCAGGGCCGCC
AGCAGCTCATTGCCCATTTTCAGAACTCCAGCTTGCTGTTAGAGGACCCT
AAGTGCCGACCTGTTATATTCGATTCTTCTGGACGACAGGAAGAGTTTCC
GATCGGTTCGCATGTGAGGACTAGGCGTGGTCCATCTAGTCGTGACACTT
CTCACCGTGCATGCGACAGTGCGCCCCCGTTTTCGCCGACCAAGCACCGT
GGGCGTAGCTGA back to topCoding sequence (CDS) from alignment at tig00000106_pilon:1316158..1318719+ >Gchil3041.t1 ID=Gchil3041.t1|Name=Gchil3041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2562bp|location=Sequence derived from alignment at tig00000106_pilon:1316158..1318719+ (Gracilaria chilensis NLEC103_M9 male) ATGGTCGACCAGTGGCCCTCGCGCGTAGCCGTCCCAACTATGGTTCACCG CGACGACCCCCAAGGAGTTGCCGGGGTCGCCGCGCTTTCGCCGCAATTCG ACTTGGCTGTGTCGCCTGCGCGCCGTTCCGTACCCCCCATTGGTTCTCTC AGTCCACAACGTTCCTTTCTTCACTCCTTCTCCTCGCCTAAAAAGCACTC TCACCTGCCGTTTTCACAAAACCCCTTCTCACAAGTCACCCCCCCGCCTC CGCCTTCCATCCCTGCCGCAGACTTGTTGGCGGAGGCTACCCATTCGGCA GAGCTGCATTCTGCAGCCGCTACTCTGCTCGATGACCCCTCCAAACCGCT CACCCCCGATTTCGACCTCTTTGGACTCGCCAAGCTCGACCTGGGTCCGT CTGTCAAACCCACTTCCACGTCCCCATCCAATCTCATCACCCCGTTTCGC TCCACCCCATTCGACCTTCCGTTCGCCACCTCGCCGCCGGTATCGTATCC AATAACCCCGCAGTCCGCCCCGCCACCGTCCACATCCCCGCGCCGCGATG CTGCCCATCCTACGCGTTGCGTCCAGCTGCGGAACATTCCGCCCGGCATC GATGATGAGGACCTTCGTCGCTTGCTCACCAAGTTTGGTCCGCTTCGCGA CCTGGGAGCTCAGCAGCGTTCGCGGGGTGGCCATGGCTCGGTTTTAGCTA CTTACTACGACCTACGTCATGCTCGCGCCGCTGTTCGAGCGTTGGACTCT ACAGTGCAGTTTGGCAGATGTTTGGATGCTCGATTTCAGTGCCCGGTCGA TATTCGCTCGCCTTTTGCCTTTGCCGCCAATGGTCACAATACCGCCCAAT GTGCAAATCAGGGTACCCTGGTTGTCTTCAACTTGGATTGTTCCACTTCA GCCGAAGATATTCGCTCCTTGTTTAGCTCCGTTGGCGACGTCAAGGAGAT TCGCGCCACGCCTAATAAGAAGCATCATAAGTTTGTCGAGTTTTATGACG TACGTGATGCAGAACGTGCTATGCATTTGCTCAACAAGACTGAAGTTGCT GGAAAACGAATCAAGATTGAAATTTCAAGACCGGGCGGCAGAGCGGCCAA CATGTCACGCGGAACCACTCAGTCTTCAAAGATGCATTCAAACAACAGCA ACACGCTTAACAGTGCCGCTGGTTTGAATCATCAGCCGAGGAATCATTTT GGCAATGGACCGCATTCTCATATCGATGTCGACTCTTTTCGCGGGTCTCC CACGCGCCACGGAGTGGATGCATTGTCACCTGTACCGCAAACTTCACCGA TTCGCGCGTCGTCACCGTGCAAGCATCACTCAATCCCCACTTCTCAAGCT GCGCAATTCGCCGTTCCCTCCCCAGAGGTCTCTTACGACATGCCCTCTTT TGACCGCACCAATCCTCTTAGCCCCCGCATGGCGTCTCTGCTCACGCCGT CTGGGTTTGATGCCACAAATGCACTGTCTGGTTCGTTTGAGAAGTCGTTT GTACCCTCACGTTCTGTCGATGGGATTGATGTGCCTATGTTGCGTGGTCT GGATTCTCTTCCAGAGCCTCGTCCTTTGGACTTTCAGGCAATGTATTCTT CGGAGCACCCGGAAATCCCCCGTGCTACTGCGAAGGCTATTCCTCCGCCA GTTTCTCGGAAACCTGTTCGGGACACGTACATGCAAGCCCTTTACCACTC CCCACCTCGTGTCGAAGATTCACACACCGGCATGATATCTCCGCCGGGTG ATTCTGCTACGGTTCGCAATCAGTTTGGTGCAATTGGTACTGGGAATCTT CTGCGGAATAGTGCTTCGGACATGGATTCTTCGCCTGTTTTCCACCAGCC ACCTTATGCTGACGCCATAAGTGGGAACAATAGCATCCGTTCGAATAATG GAAACGCGAATATTTCGCGGAAGATTGGAAATGGATCCGGTGTGGAGCGG TCGTCAAACGGCTCACACCGCCATTCCAACGGGCCCAAGTCTAACTCTCA TGGCCGAAGTTATCCCAATCAGCACCAGGTGAATTCCAAATATGTTTTGG AGATTGTTAAAGTACGTTCAGGAGAGGAGACAAGGACGGCTCTTATGATC CGGAACATTCCGAACAAATACAACCAAAAGATGCTATTAAGTACTCTGGA GAACGAACATAAGGGTCATTTTGACTTTATTTATCTCCCCATCGACTTCA AGAATAAGTGCAACGTTGGGTATGCGTTCATCAACTTCACGAAGCCCGAG TATATCGAACCATTTTACAATGCCTTCCATGGAAAGAAGTGGGGTCGTTT CAATTCGGAGAAGGTGTGCGAGATAACTTTTGCACGGATTCAGGGCCGCC AGCAGCTCATTGCCCATTTTCAGAACTCCAGCTTGCTGTTAGAGGACCCT AAGTGCCGACCTGTTATATTCGATTCTTCTGGACGACAGGAAGAGTTTCC GATCGGTTCGCATGTGAGGACTAGGCGTGGTCCATCTAGTCGTGACACTT CTCACCGTGCATGCGACAGTGCGCCCCCGTTTTCGCCGACCAAGCACCGT GGGCGTAGCTGA back to top
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