Gchil3035.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3035.t2
Unique Name	Gchil3035.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1228714..1230498 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706891.1
Preferred name	PANK4
PFAMs	DUF89,Fumble
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K09680
KEGG Reaction	R02971,R03018,R04391
KEGG Pathway	ko00770,ko01100,map00770,map01100
KEGG Module	M00120
GOs	GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	1.08e-137
EggNOG OGs	COG5146@1\|root,KOG2201@2759\|Eukaryota
EC	2.7.1.33
Description	pantothenate kinase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3035	Gchil3035	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1228714..1230498 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3035.t2.stop1	Gchil3035.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1228714..1228716 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3035.t2.CDS1	Gchil3035.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1228714..1230498 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3035.t2.exon1	Gchil3035.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1228714..1230498 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3035.t2.start1	Gchil3035.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1230496..1230498 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3035.t2	Gchil3035.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1228714..1230498 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1228714..1230498-
coding sequence from alignment at tig00000106_pilon:1228714..1230498-

mRNA sequence

>Gchil3035.t2 ID=Gchil3035.t2|Name=Gchil3035.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=595bp
MPPGLPQSPSTQPHLVQVDTALTVLAQINLLKESNALALDIGGSLAKLIY
LQPHSSNKPHPPPLKIHQVDGTVANALSVHVPILHGTLHFFAFESRNIYQ
MLRFIRRNWPHHIYRRYIRATGGGSFKYETAFRDEIGVFLNRLDEMTSTV
AGLNFLLTQVENEAYTYSQPNPERLPCAQTIPDSTRTFLPVNHDPFPYLL
VNIGSGVSIVKVTDHGKFERVSGSALGGGTFWGLARMLLDCETFDQVIDL
THKGDNRNVDMLVGDIYGGAYDNIGLDASVIAASFGKATMRRDYTRHQIS
AWSLIKDRFRRAIWGTIDLWLSFLHAIPVAGRLFKLLGIGNDVPWSPSLI
THTGAQYRPQDIALSLLRMVSYNIGQIAYLNARLHNLDTIYFAGNFIRNH
PYTIADISFAVDFWSGGKMKAFFLKHDGYLGAIGALIGASSASPREIFDE
SPPLAPDSRHTQLSPTDQGAVPNGQSATIESSSHWNRNSPADASVDSPET
QPECDREKELASSKPTEAGAADAQATHPEIIKSSKRRRKKNSKGHVSVIA
DPSEFLNGDSVCADEHESEGEWTTVTRVRRKAPIKDKRDSSAKG*

spliced messenger RNA

>Gchil3035.t2 ID=Gchil3035.t2|Name=Gchil3035.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00000106_pilon:1228714..1230498- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGGCCTCCCCCAGTCCCCCTCCACCCAGCCACATCTCGTCCA
GGTTGACACCGCCCTCACCGTGCTTGCACAGATCAACCTGCTCAAGGAGT
CCAACGCCCTCGCGCTCGACATCGGCGGCTCGCTCGCAAAGCTCATCTAC
CTGCAGCCCCACTCCTCCAACAAGCCCCATCCACCCCCCCTCAAAATTCA
CCAGGTCGACGGCACCGTGGCCAACGCACTGTCCGTCCATGTGCCCATTC
TCCATGGCACCCTACATTTCTTCGCCTTCGAGTCCAGGAACATTTACCAA
ATGCTCCGCTTTATTCGCCGCAATTGGCCTCACCACATTTACCGCAGGTA
CATACGCGCCACTGGCGGCGGCTCCTTCAAGTACGAGACCGCCTTTCGTG
ACGAGATTGGCGTCTTTCTTAACAGACTGGATGAGATGACTTCCACCGTT
GCAGGCCTCAACTTTCTGCTCACCCAGGTTGAGAATGAGGCCTACACCTA
CTCTCAGCCCAACCCGGAACGTCTGCCGTGCGCACAGACAATTCCAGATA
GCACTCGCACTTTTCTGCCTGTCAACCACGATCCCTTCCCGTATCTACTC
GTCAACATTGGCAGTGGCGTATCAATTGTAAAAGTCACCGATCACGGAAA
GTTTGAGCGTGTGAGCGGCAGCGCGCTCGGTGGCGGTACCTTCTGGGGAC
TGGCCAGAATGCTGCTCGATTGCGAAACTTTTGATCAGGTTATCGATCTT
ACGCACAAGGGCGACAACCGCAACGTGGACATGCTTGTGGGTGATATATA
CGGCGGTGCCTATGACAACATTGGCCTTGACGCAAGCGTAATCGCCGCGT
CATTTGGTAAGGCAACCATGCGAAGGGATTACACCCGTCATCAGATCAGC
GCATGGTCTCTCATCAAAGACCGCTTCCGCAGGGCCATCTGGGGCACAAT
TGATCTTTGGCTATCCTTCCTTCACGCAATTCCCGTTGCCGGCCGTTTGT
TCAAGCTTCTCGGCATCGGCAACGACGTGCCTTGGTCTCCTTCTCTTATC
ACGCACACAGGAGCCCAATACAGACCGCAAGACATTGCCTTGTCCCTGCT
GCGAATGGTGTCGTACAACATTGGCCAGATTGCCTACCTCAACGCTCGTC
TCCATAACCTGGACACCATTTACTTTGCAGGCAATTTTATACGCAACCAC
CCATATACAATTGCGGACATATCTTTCGCAGTGGACTTTTGGTCTGGTGG
CAAAATGAAAGCTTTCTTTCTAAAGCATGACGGTTATTTAGGAGCCATTG
GGGCACTCATCGGAGCTTCGAGTGCGTCACCTCGAGAAATCTTTGATGAG
TCACCACCACTCGCTCCAGACTCCCGACATACGCAATTGTCTCCTACAGA
CCAGGGCGCAGTCCCCAACGGCCAATCAGCAACTATCGAAAGTTCCTCGC
ATTGGAACAGAAATAGCCCTGCGGATGCCAGTGTGGATTCGCCCGAAACC
CAGCCAGAGTGCGACCGCGAGAAAGAGCTCGCCTCATCGAAACCGACCGA
AGCAGGTGCCGCCGATGCGCAAGCCACCCACCCTGAAATCATCAAGTCCT
CGAAAAGAAGGCGGAAGAAGAATTCAAAGGGGCATGTGAGTGTAATCGCC
GACCCTTCTGAGTTTTTGAACGGCGACTCCGTGTGTGCGGACGAGCACGA
GTCCGAGGGAGAGTGGACAACGGTGACTAGAGTACGCCGGAAGGCCCCTA
TCAAAGACAAGCGGGATTCGAGCGCAAAAGGTTGA

protein sequence of Gchil3035.t2

>Gchil3035.t2 ID=Gchil3035.t2|Name=Gchil3035.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=595bp
MPPGLPQSPSTQPHLVQVDTALTVLAQINLLKESNALALDIGGSLAKLIY
LQPHSSNKPHPPPLKIHQVDGTVANALSVHVPILHGTLHFFAFESRNIYQ
MLRFIRRNWPHHIYRRYIRATGGGSFKYETAFRDEIGVFLNRLDEMTSTV
AGLNFLLTQVENEAYTYSQPNPERLPCAQTIPDSTRTFLPVNHDPFPYLL
VNIGSGVSIVKVTDHGKFERVSGSALGGGTFWGLARMLLDCETFDQVIDL
THKGDNRNVDMLVGDIYGGAYDNIGLDASVIAASFGKATMRRDYTRHQIS
AWSLIKDRFRRAIWGTIDLWLSFLHAIPVAGRLFKLLGIGNDVPWSPSLI
THTGAQYRPQDIALSLLRMVSYNIGQIAYLNARLHNLDTIYFAGNFIRNH
PYTIADISFAVDFWSGGKMKAFFLKHDGYLGAIGALIGASSASPREIFDE
SPPLAPDSRHTQLSPTDQGAVPNGQSATIESSSHWNRNSPADASVDSPET
QPECDREKELASSKPTEAGAADAQATHPEIIKSSKRRRKKNSKGHVSVIA
DPSEFLNGDSVCADEHESEGEWTTVTRVRRKAPIKDKRDSSAKG*

mRNA from alignment at tig00000106_pilon:1228714..1230498-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3035.t2 ID=Gchil3035.t2|Name=Gchil3035.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at tig00000106_pilon:1228714..1230498- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCGGCCTCCCCCAGTCCCCCTCCACCCAGCCACATCTCGTCCA
GGTTGACACCGCCCTCACCGTGCTTGCACAGATCAACCTGCTCAAGGAGT
CCAACGCCCTCGCGCTCGACATCGGCGGCTCGCTCGCAAAGCTCATCTAC
CTGCAGCCCCACTCCTCCAACAAGCCCCATCCACCCCCCCTCAAAATTCA
CCAGGTCGACGGCACCGTGGCCAACGCACTGTCCGTCCATGTGCCCATTC
TCCATGGCACCCTACATTTCTTCGCCTTCGAGTCCAGGAACATTTACCAA
ATGCTCCGCTTTATTCGCCGCAATTGGCCTCACCACATTTACCGCAGGTA
CATACGCGCCACTGGCGGCGGCTCCTTCAAGTACGAGACCGCCTTTCGTG
ACGAGATTGGCGTCTTTCTTAACAGACTGGATGAGATGACTTCCACCGTT
GCAGGCCTCAACTTTCTGCTCACCCAGGTTGAGAATGAGGCCTACACCTA
CTCTCAGCCCAACCCGGAACGTCTGCCGTGCGCACAGACAATTCCAGATA
GCACTCGCACTTTTCTGCCTGTCAACCACGATCCCTTCCCGTATCTACTC
GTCAACATTGGCAGTGGCGTATCAATTGTAAAAGTCACCGATCACGGAAA
GTTTGAGCGTGTGAGCGGCAGCGCGCTCGGTGGCGGTACCTTCTGGGGAC
TGGCCAGAATGCTGCTCGATTGCGAAACTTTTGATCAGGTTATCGATCTT
ACGCACAAGGGCGACAACCGCAACGTGGACATGCTTGTGGGTGATATATA
CGGCGGTGCCTATGACAACATTGGCCTTGACGCAAGCGTAATCGCCGCGT
CATTTGGTAAGGCAACCATGCGAAGGGATTACACCCGTCATCAGATCAGC
GCATGGTCTCTCATCAAAGACCGCTTCCGCAGGGCCATCTGGGGCACAAT
TGATCTTTGGCTATCCTTCCTTCACGCAATTCCCGTTGCCGGCCGTTTGT
TCAAGCTTCTCGGCATCGGCAACGACGTGCCTTGGTCTCCTTCTCTTATC
ACGCACACAGGAGCCCAATACAGACCGCAAGACATTGCCTTGTCCCTGCT
GCGAATGGTGTCGTACAACATTGGCCAGATTGCCTACCTCAACGCTCGTC
TCCATAACCTGGACACCATTTACTTTGCAGGCAATTTTATACGCAACCAC
CCATATACAATTGCGGACATATCTTTCGCAGTGGACTTTTGGTCTGGTGG
CAAAATGAAAGCTTTCTTTCTAAAGCATGACGGTTATTTAGGAGCCATTG
GGGCACTCATCGGAGCTTCGAGTGCGTCACCTCGAGAAATCTTTGATGAG
TCACCACCACTCGCTCCAGACTCCCGACATACGCAATTGTCTCCTACAGA
CCAGGGCGCAGTCCCCAACGGCCAATCAGCAACTATCGAAAGTTCCTCGC
ATTGGAACAGAAATAGCCCTGCGGATGCCAGTGTGGATTCGCCCGAAACC
CAGCCAGAGTGCGACCGCGAGAAAGAGCTCGCCTCATCGAAACCGACCGA
AGCAGGTGCCGCCGATGCGCAAGCCACCCACCCTGAAATCATCAAGTCCT
CGAAAAGAAGGCGGAAGAAGAATTCAAAGGGGCATGTGAGTGTAATCGCC
GACCCTTCTGAGTTTTTGAACGGCGACTCCGTGTGTGCGGACGAGCACGA
GTCCGAGGGAGAGTGGACAACGGTGACTAGAGTACGCCGGAAGGCCCCTA
TCAAAGACAAGCGGGATTCGAGCGCAAAAGGTTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:1228714..1230498-

>Gchil3035.t2 ID=Gchil3035.t2|Name=Gchil3035.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1785bp|location=Sequence derived from alignment at tig00000106_pilon:1228714..1230498- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCCGGCCTCCCCCAGTCCCCCTCCACCCAGCCACATCTCGTCCA
GGTTGACACCGCCCTCACCGTGCTTGCACAGATCAACCTGCTCAAGGAGT
CCAACGCCCTCGCGCTCGACATCGGCGGCTCGCTCGCAAAGCTCATCTAC
CTGCAGCCCCACTCCTCCAACAAGCCCCATCCACCCCCCCTCAAAATTCA
CCAGGTCGACGGCACCGTGGCCAACGCACTGTCCGTCCATGTGCCCATTC
TCCATGGCACCCTACATTTCTTCGCCTTCGAGTCCAGGAACATTTACCAA
ATGCTCCGCTTTATTCGCCGCAATTGGCCTCACCACATTTACCGCAGGTA
CATACGCGCCACTGGCGGCGGCTCCTTCAAGTACGAGACCGCCTTTCGTG
ACGAGATTGGCGTCTTTCTTAACAGACTGGATGAGATGACTTCCACCGTT
GCAGGCCTCAACTTTCTGCTCACCCAGGTTGAGAATGAGGCCTACACCTA
CTCTCAGCCCAACCCGGAACGTCTGCCGTGCGCACAGACAATTCCAGATA
GCACTCGCACTTTTCTGCCTGTCAACCACGATCCCTTCCCGTATCTACTC
GTCAACATTGGCAGTGGCGTATCAATTGTAAAAGTCACCGATCACGGAAA
GTTTGAGCGTGTGAGCGGCAGCGCGCTCGGTGGCGGTACCTTCTGGGGAC
TGGCCAGAATGCTGCTCGATTGCGAAACTTTTGATCAGGTTATCGATCTT
ACGCACAAGGGCGACAACCGCAACGTGGACATGCTTGTGGGTGATATATA
CGGCGGTGCCTATGACAACATTGGCCTTGACGCAAGCGTAATCGCCGCGT
CATTTGGTAAGGCAACCATGCGAAGGGATTACACCCGTCATCAGATCAGC
GCATGGTCTCTCATCAAAGACCGCTTCCGCAGGGCCATCTGGGGCACAAT
TGATCTTTGGCTATCCTTCCTTCACGCAATTCCCGTTGCCGGCCGTTTGT
TCAAGCTTCTCGGCATCGGCAACGACGTGCCTTGGTCTCCTTCTCTTATC
ACGCACACAGGAGCCCAATACAGACCGCAAGACATTGCCTTGTCCCTGCT
GCGAATGGTGTCGTACAACATTGGCCAGATTGCCTACCTCAACGCTCGTC
TCCATAACCTGGACACCATTTACTTTGCAGGCAATTTTATACGCAACCAC
CCATATACAATTGCGGACATATCTTTCGCAGTGGACTTTTGGTCTGGTGG
CAAAATGAAAGCTTTCTTTCTAAAGCATGACGGTTATTTAGGAGCCATTG
GGGCACTCATCGGAGCTTCGAGTGCGTCACCTCGAGAAATCTTTGATGAG
TCACCACCACTCGCTCCAGACTCCCGACATACGCAATTGTCTCCTACAGA
CCAGGGCGCAGTCCCCAACGGCCAATCAGCAACTATCGAAAGTTCCTCGC
ATTGGAACAGAAATAGCCCTGCGGATGCCAGTGTGGATTCGCCCGAAACC
CAGCCAGAGTGCGACCGCGAGAAAGAGCTCGCCTCATCGAAACCGACCGA
AGCAGGTGCCGCCGATGCGCAAGCCACCCACCCTGAAATCATCAAGTCCT
CGAAAAGAAGGCGGAAGAAGAATTCAAAGGGGCATGTGAGTGTAATCGCC
GACCCTTCTGAGTTTTTGAACGGCGACTCCGTGTGTGCGGACGAGCACGA
GTCCGAGGGAGAGTGGACAACGGTGACTAGAGTACGCCGGAAGGCCCCTA
TCAAAGACAAGCGGGATTCGAGCGCAAAAGGTTGA