Gchil3023.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3023.t1
Unique NameGchil3023.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length535
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1147325..1148929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo108941
PFAMsNAPRTase
Max annot lvl4776|Peronosporales
KEGG rclassRC00033
KEGG koko:K00763
KEGG ReactionR01724
KEGG Pathwayko00760,ko01100,map00760,map01100
Evalue1.6e-130
EggNOG OGsCOG1488@1|root,KOG2511@2759|Eukaryota,3QAFQ@4776|Peronosporales
EC6.3.4.21
Descriptionnicotinate phosphoribosyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3023Gchil3023Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1147325..1148929 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3023.t1.stop1Gchil3023.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1147325..1147327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3023.t1.CDS1Gchil3023.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1147325..1148929 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3023.t1.exon1Gchil3023.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1147325..1148929 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3023.t1.start1Gchil3023.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1148927..1148929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3023.t1Gchil3023.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1147325..1148929 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3023.t1 ID=Gchil3023.t1|Name=Gchil3023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=535bp
MHLSPLLTDKYQVTMAYTYWKAATHETASCFDLYFRKAPFHLPFAVFAGL
HQCIRFIHSFRFTPRHTNYISTLIPNCDPRFLAWLQAVHCKSLRVMAQKE
GSFVFANVPLMRLSGPLAIVQLLETTLLNLVNYATLVATNAFRFRLAAGP
HASLFEFGLRRAQGPDGAMSASRYTFQAGFDATSNLAAGLEFDIPVVGTH
AHSFVQSFSSSHDASPDHLFLTSSSGNQISFDAFRHRVLHIRDSVASSYK
TVHAELVAFMCYAVVHPHSFVALVDTYNSLQSGVPNFMCVALTLHEHAFT
PLGIRLDSGDLGRLSIGAHSLFHDIAKAYIQRYGADADQVNSMVSALSIV
ASDNITVPKLHQLRNLDHKISAYGIGTHLVTCFEQPALGAVFKLSSIAHE
PRIKFSDDHTKTSTPGEKVAYRAYDHGGKAMCDILALEHERVETAENKLT
LRDRDQPHLIVTVFPHRIRKLLHLVWDGEACSEQLDARQCTQRAKRRLAV
DAAEFDPDVIGQICEGKKYPVLISPSLYQLLCIK*
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spliced messenger RNA

>Gchil3023.t1 ID=Gchil3023.t1|Name=Gchil3023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000106_pilon:1147325..1148929- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGTCCCCATTGCTCACCGACAAGTACCAGGTCACCATGGCATA
CACCTATTGGAAGGCCGCTACCCACGAAACCGCCTCCTGCTTCGATCTCT
ATTTCAGGAAAGCACCCTTCCATCTGCCATTCGCCGTTTTCGCCGGCCTT
CACCAGTGCATTCGCTTCATCCACTCCTTCCGCTTCACCCCGCGACATAC
CAACTACATCTCCACCCTCATTCCCAACTGTGATCCGCGCTTTCTCGCAT
GGCTGCAAGCCGTCCATTGCAAATCGCTTCGCGTAATGGCGCAGAAAGAA
GGCTCATTTGTGTTTGCCAATGTTCCCTTGATGCGTCTTTCCGGTCCCTT
GGCTATTGTGCAACTGTTGGAAACCACTCTTCTCAATTTGGTCAACTACG
CAACTTTGGTTGCTACCAATGCCTTTCGATTCCGCCTCGCCGCCGGGCCC
CATGCCAGTCTGTTTGAGTTCGGTCTCAGAAGAGCCCAGGGCCCTGATGG
CGCAATGTCTGCCTCGCGCTACACTTTTCAAGCTGGATTTGATGCCACCA
GCAATTTGGCCGCTGGTTTAGAGTTTGACATTCCTGTCGTTGGCACTCAC
GCCCACTCTTTCGTTCAAAGCTTTTCTTCCTCCCATGATGCTAGCCCCGA
TCACCTCTTCCTCACCTCTTCCTCGGGCAACCAAATTTCTTTTGATGCTT
TCAGGCATCGCGTATTGCACATTCGAGATAGTGTGGCGTCAAGTTACAAA
ACTGTACACGCTGAACTCGTTGCCTTTATGTGTTATGCCGTTGTGCACCC
TCATTCATTTGTCGCCTTAGTAGACACGTACAATTCGCTTCAATCGGGCG
TGCCCAATTTCATGTGCGTCGCTTTAACATTGCACGAGCACGCTTTCACT
CCACTTGGAATACGACTGGACTCCGGCGACTTGGGCCGCCTGTCCATTGG
CGCCCATTCCCTCTTTCATGACATTGCAAAAGCTTACATTCAACGTTATG
GAGCAGATGCAGATCAGGTGAACAGCATGGTCTCAGCTTTGTCCATTGTA
GCAAGCGATAACATCACCGTTCCAAAGCTGCACCAGCTTCGAAATTTGGA
CCATAAAATATCGGCCTATGGCATTGGAACGCATCTTGTGACATGTTTTG
AACAACCAGCGCTTGGTGCTGTGTTCAAGTTGTCTAGCATTGCCCATGAA
CCGCGGATTAAGTTTTCTGATGATCACACGAAAACCTCCACACCTGGTGA
GAAGGTAGCTTATCGTGCTTACGACCACGGTGGTAAAGCTATGTGTGACA
TTCTCGCATTAGAGCATGAACGAGTAGAGACGGCTGAAAACAAACTAACG
CTGAGAGATAGAGATCAGCCACATCTAATCGTCACCGTATTTCCGCACCG
AATACGAAAGCTTTTACACTTGGTGTGGGACGGGGAAGCTTGCAGTGAAC
AACTTGACGCGAGGCAGTGCACGCAACGTGCAAAACGTCGGTTAGCAGTA
GATGCCGCAGAGTTTGACCCTGACGTGATTGGGCAAATCTGCGAAGGCAA
GAAATATCCTGTACTGATTTCCCCTTCTTTGTATCAACTTCTTTGTATCA
AATGA
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protein sequence of Gchil3023.t1

>Gchil3023.t1 ID=Gchil3023.t1|Name=Gchil3023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=535bp
MHLSPLLTDKYQVTMAYTYWKAATHETASCFDLYFRKAPFHLPFAVFAGL
HQCIRFIHSFRFTPRHTNYISTLIPNCDPRFLAWLQAVHCKSLRVMAQKE
GSFVFANVPLMRLSGPLAIVQLLETTLLNLVNYATLVATNAFRFRLAAGP
HASLFEFGLRRAQGPDGAMSASRYTFQAGFDATSNLAAGLEFDIPVVGTH
AHSFVQSFSSSHDASPDHLFLTSSSGNQISFDAFRHRVLHIRDSVASSYK
TVHAELVAFMCYAVVHPHSFVALVDTYNSLQSGVPNFMCVALTLHEHAFT
PLGIRLDSGDLGRLSIGAHSLFHDIAKAYIQRYGADADQVNSMVSALSIV
ASDNITVPKLHQLRNLDHKISAYGIGTHLVTCFEQPALGAVFKLSSIAHE
PRIKFSDDHTKTSTPGEKVAYRAYDHGGKAMCDILALEHERVETAENKLT
LRDRDQPHLIVTVFPHRIRKLLHLVWDGEACSEQLDARQCTQRAKRRLAV
DAAEFDPDVIGQICEGKKYPVLISPSLYQLLCIK*
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mRNA from alignment at tig00000106_pilon:1147325..1148929-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3023.t1 ID=Gchil3023.t1|Name=Gchil3023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000106_pilon:1147325..1148929- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCTGTCCCCATTGCTCACCGACAAGTACCAGGTCACCATGGCATA
CACCTATTGGAAGGCCGCTACCCACGAAACCGCCTCCTGCTTCGATCTCT
ATTTCAGGAAAGCACCCTTCCATCTGCCATTCGCCGTTTTCGCCGGCCTT
CACCAGTGCATTCGCTTCATCCACTCCTTCCGCTTCACCCCGCGACATAC
CAACTACATCTCCACCCTCATTCCCAACTGTGATCCGCGCTTTCTCGCAT
GGCTGCAAGCCGTCCATTGCAAATCGCTTCGCGTAATGGCGCAGAAAGAA
GGCTCATTTGTGTTTGCCAATGTTCCCTTGATGCGTCTTTCCGGTCCCTT
GGCTATTGTGCAACTGTTGGAAACCACTCTTCTCAATTTGGTCAACTACG
CAACTTTGGTTGCTACCAATGCCTTTCGATTCCGCCTCGCCGCCGGGCCC
CATGCCAGTCTGTTTGAGTTCGGTCTCAGAAGAGCCCAGGGCCCTGATGG
CGCAATGTCTGCCTCGCGCTACACTTTTCAAGCTGGATTTGATGCCACCA
GCAATTTGGCCGCTGGTTTAGAGTTTGACATTCCTGTCGTTGGCACTCAC
GCCCACTCTTTCGTTCAAAGCTTTTCTTCCTCCCATGATGCTAGCCCCGA
TCACCTCTTCCTCACCTCTTCCTCGGGCAACCAAATTTCTTTTGATGCTT
TCAGGCATCGCGTATTGCACATTCGAGATAGTGTGGCGTCAAGTTACAAA
ACTGTACACGCTGAACTCGTTGCCTTTATGTGTTATGCCGTTGTGCACCC
TCATTCATTTGTCGCCTTAGTAGACACGTACAATTCGCTTCAATCGGGCG
TGCCCAATTTCATGTGCGTCGCTTTAACATTGCACGAGCACGCTTTCACT
CCACTTGGAATACGACTGGACTCCGGCGACTTGGGCCGCCTGTCCATTGG
CGCCCATTCCCTCTTTCATGACATTGCAAAAGCTTACATTCAACGTTATG
GAGCAGATGCAGATCAGGTGAACAGCATGGTCTCAGCTTTGTCCATTGTA
GCAAGCGATAACATCACCGTTCCAAAGCTGCACCAGCTTCGAAATTTGGA
CCATAAAATATCGGCCTATGGCATTGGAACGCATCTTGTGACATGTTTTG
AACAACCAGCGCTTGGTGCTGTGTTCAAGTTGTCTAGCATTGCCCATGAA
CCGCGGATTAAGTTTTCTGATGATCACACGAAAACCTCCACACCTGGTGA
GAAGGTAGCTTATCGTGCTTACGACCACGGTGGTAAAGCTATGTGTGACA
TTCTCGCATTAGAGCATGAACGAGTAGAGACGGCTGAAAACAAACTAACG
CTGAGAGATAGAGATCAGCCACATCTAATCGTCACCGTATTTCCGCACCG
AATACGAAAGCTTTTACACTTGGTGTGGGACGGGGAAGCTTGCAGTGAAC
AACTTGACGCGAGGCAGTGCACGCAACGTGCAAAACGTCGGTTAGCAGTA
GATGCCGCAGAGTTTGACCCTGACGTGATTGGGCAAATCTGCGAAGGCAA
GAAATATCCTGTACTGATTTCCCCTTCTTTGTATCAACTTCTTTGTATCA
AATGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:1147325..1148929-

>Gchil3023.t1 ID=Gchil3023.t1|Name=Gchil3023.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00000106_pilon:1147325..1148929- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCTGTCCCCATTGCTCACCGACAAGTACCAGGTCACCATGGCATA
CACCTATTGGAAGGCCGCTACCCACGAAACCGCCTCCTGCTTCGATCTCT
ATTTCAGGAAAGCACCCTTCCATCTGCCATTCGCCGTTTTCGCCGGCCTT
CACCAGTGCATTCGCTTCATCCACTCCTTCCGCTTCACCCCGCGACATAC
CAACTACATCTCCACCCTCATTCCCAACTGTGATCCGCGCTTTCTCGCAT
GGCTGCAAGCCGTCCATTGCAAATCGCTTCGCGTAATGGCGCAGAAAGAA
GGCTCATTTGTGTTTGCCAATGTTCCCTTGATGCGTCTTTCCGGTCCCTT
GGCTATTGTGCAACTGTTGGAAACCACTCTTCTCAATTTGGTCAACTACG
CAACTTTGGTTGCTACCAATGCCTTTCGATTCCGCCTCGCCGCCGGGCCC
CATGCCAGTCTGTTTGAGTTCGGTCTCAGAAGAGCCCAGGGCCCTGATGG
CGCAATGTCTGCCTCGCGCTACACTTTTCAAGCTGGATTTGATGCCACCA
GCAATTTGGCCGCTGGTTTAGAGTTTGACATTCCTGTCGTTGGCACTCAC
GCCCACTCTTTCGTTCAAAGCTTTTCTTCCTCCCATGATGCTAGCCCCGA
TCACCTCTTCCTCACCTCTTCCTCGGGCAACCAAATTTCTTTTGATGCTT
TCAGGCATCGCGTATTGCACATTCGAGATAGTGTGGCGTCAAGTTACAAA
ACTGTACACGCTGAACTCGTTGCCTTTATGTGTTATGCCGTTGTGCACCC
TCATTCATTTGTCGCCTTAGTAGACACGTACAATTCGCTTCAATCGGGCG
TGCCCAATTTCATGTGCGTCGCTTTAACATTGCACGAGCACGCTTTCACT
CCACTTGGAATACGACTGGACTCCGGCGACTTGGGCCGCCTGTCCATTGG
CGCCCATTCCCTCTTTCATGACATTGCAAAAGCTTACATTCAACGTTATG
GAGCAGATGCAGATCAGGTGAACAGCATGGTCTCAGCTTTGTCCATTGTA
GCAAGCGATAACATCACCGTTCCAAAGCTGCACCAGCTTCGAAATTTGGA
CCATAAAATATCGGCCTATGGCATTGGAACGCATCTTGTGACATGTTTTG
AACAACCAGCGCTTGGTGCTGTGTTCAAGTTGTCTAGCATTGCCCATGAA
CCGCGGATTAAGTTTTCTGATGATCACACGAAAACCTCCACACCTGGTGA
GAAGGTAGCTTATCGTGCTTACGACCACGGTGGTAAAGCTATGTGTGACA
TTCTCGCATTAGAGCATGAACGAGTAGAGACGGCTGAAAACAAACTAACG
CTGAGAGATAGAGATCAGCCACATCTAATCGTCACCGTATTTCCGCACCG
AATACGAAAGCTTTTACACTTGGTGTGGGACGGGGAAGCTTGCAGTGAAC
AACTTGACGCGAGGCAGTGCACGCAACGTGCAAAACGTCGGTTAGCAGTA
GATGCCGCAGAGTTTGACCCTGACGTGATTGGGCAAATCTGCGAAGGCAA
GAAATATCCTGTACTGATTTCCCCTTCTTTGTATCAACTTCTTTGTATCA
AATGA
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