Gchil3020.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3020.t1
Unique Name	Gchil3020.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	603

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1081345..1083153 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703327.1
PFAMs	SufE,tRNA_Me_trans
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00037,RC00039
KEGG ko	ko:K13523,ko:K21027
KEGG Reaction	R02241,R09034,R09381
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,ko04072,map00561,map00564,map01100,map01110,map04072
KEGG Module	M00089
Evalue	1.25e-142
EggNOG OGs	COG0482@1\|root,KOG2805@2759\|Eukaryota
EC	2.3.1.51,2.8.1.14
Description	mitochondrial tRNA thio-modification
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3020	Gchil3020	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1081345..1083153 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3020.t1.start1	Gchil3020.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1081345..1081347 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3020.t1.CDS1	Gchil3020.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1081345..1083153 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3020.t1.exon1	Gchil3020.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1081345..1083153 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3020.t1.stop1	Gchil3020.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1083151..1083153 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3020.t1	Gchil3020.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1081345..1083153 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1081345..1083153+
coding sequence from alignment at tig00000106_pilon:1081345..1083153+

mRNA sequence

>Gchil3020.t1 ID=Gchil3020.t1|Name=Gchil3020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp
MKLPKRRRGSRILGFIPGLVPPSSQTRTAPRISHQFKRTKNEIVSSRTSH
VKLVCVLPQRLETLITDIGQQPNATSRYMKLVELGDHMISIPEESLTAST
RVSGCFSITHISVHLCAHGTVSLRGYSDARISRGLVALLALGLDGCFIED
ILKLDLNEVLRRAVLPEGIGPSRINGLANIFREIQRQVRVLRNRLPSAQN
NDEHVLTGRWSERQGEDVAVLLSGGVDSSVAMRLALENGARVHPFYLKIW
LDDELAHMGECPWEEDIEYANDVCKQVGVKLHDVPFQRAYWDEVVSYTVQ
EAQKGRTPNPDILCNSRIKFGAFYDKIGKHYERIVTGHYAQTTKDESGRV
ELRLSRDELKDQTYFLAHLRQDQLATASFPVGKYKKGEIRKLAEVYNLPN
KARRDSQGICFLGKLKFNDFLDHHLGQRKGSLVEFETGQELGYHNGYWFF
TLGQRRGVGLSGGPWYVVAKDVPQNIVYVSKDYNSVSKERKRFDFDSVLW
ISGQWPKQLRDPGDTLRVRVKTRHGPRFHDAMLTRLDDDDKGRVELDSRD
KGLAPGQFSAFYDYEGRCLGSGVIKSDVSLSDAPAEVRSLRLLSKKLQAH
FL*

spliced messenger RNA

>Gchil3020.t1 ID=Gchil3020.t1|Name=Gchil3020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00000106_pilon:1081345..1083153+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTGCCTAAGCGAAGACGGGGCTCGCGGATTCTGGGTTTTATTCC
AGGTTTGGTTCCACCTTCATCTCAGACCCGCACCGCTCCTAGAATCAGTC
ACCAATTCAAGCGAACGAAGAATGAAATAGTCAGTTCTCGAACCAGCCAT
GTAAAATTGGTTTGCGTTCTTCCACAGCGACTGGAGACTTTGATTACCGA
TATAGGACAACAGCCAAACGCTACATCTCGATATATGAAACTGGTCGAGC
TCGGTGACCATATGATTTCCATTCCCGAAGAAAGTCTTACGGCTTCTACC
AGGGTTTCTGGATGTTTTTCAATAACTCACATCAGTGTGCATCTCTGTGC
TCATGGTACCGTAAGCTTACGAGGATATTCAGATGCCCGTATTTCACGCG
GGCTGGTTGCTTTACTTGCGCTCGGACTCGATGGATGTTTTATTGAAGAT
ATACTCAAACTAGATTTAAATGAGGTGCTGCGCAGGGCTGTTCTACCCGA
AGGCATTGGTCCATCTCGGATTAATGGTCTCGCCAACATTTTCCGAGAAA
TTCAGAGACAGGTTCGTGTTCTTAGGAATAGGCTTCCCAGTGCGCAGAAC
AACGATGAACACGTTTTGACCGGCAGGTGGAGCGAACGGCAAGGAGAGGA
TGTTGCCGTCTTGCTTTCTGGTGGCGTAGACAGTTCAGTAGCAATGCGTC
TTGCTCTTGAAAATGGAGCTAGAGTTCATCCCTTTTACCTAAAGATATGG
CTTGACGATGAATTAGCACACATGGGAGAATGTCCATGGGAGGAAGATAT
AGAGTATGCGAACGATGTTTGCAAACAAGTTGGCGTAAAATTGCACGACG
TTCCATTCCAGCGAGCATACTGGGACGAAGTTGTATCGTATACAGTTCAA
GAAGCTCAAAAAGGACGTACCCCGAACCCGGACATATTGTGCAATTCTAG
GATAAAGTTTGGTGCATTCTATGATAAGATTGGAAAGCACTATGAAAGAA
TTGTAACAGGCCACTACGCTCAAACCACAAAAGACGAGTCTGGGAGAGTG
GAGCTAAGACTGTCACGGGATGAGTTAAAAGACCAGACATACTTCCTAGC
CCATTTAAGACAAGACCAGCTTGCCACAGCTTCTTTTCCAGTTGGAAAAT
ATAAAAAGGGTGAAATCCGAAAGCTTGCTGAAGTCTACAATCTTCCAAAC
AAAGCTCGTCGAGATTCGCAGGGGATATGTTTTCTGGGAAAATTGAAATT
CAACGACTTCCTTGATCATCACCTTGGTCAAAGGAAAGGATCACTTGTCG
AATTTGAAACCGGTCAAGAACTCGGTTATCACAATGGCTATTGGTTCTTT
ACTCTGGGTCAGAGGAGGGGAGTTGGATTGTCCGGCGGGCCTTGGTACGT
TGTAGCCAAGGATGTACCACAAAACATTGTATATGTAAGCAAGGACTACA
ACAGTGTATCGAAAGAACGGAAACGTTTTGATTTTGACTCGGTTCTCTGG
ATTTCCGGGCAATGGCCGAAACAACTACGAGATCCAGGTGACACGTTGCG
AGTGAGAGTGAAGACTAGACATGGACCTCGATTTCATGACGCTATGCTGA
CGAGGTTGGATGATGATGACAAGGGCCGAGTCGAACTAGACTCGAGGGAT
AAAGGACTTGCTCCTGGTCAATTTTCAGCATTTTATGACTACGAAGGAAG
ATGCCTTGGTTCGGGCGTAATTAAGTCTGATGTTTCCTTGTCCGACGCAC
CTGCTGAAGTAAGGAGCCTTCGCTTGCTTTCAAAGAAGCTCCAAGCACAT
TTTCTGTGA

protein sequence of Gchil3020.t1

>Gchil3020.t1 ID=Gchil3020.t1|Name=Gchil3020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=603bp
MKLPKRRRGSRILGFIPGLVPPSSQTRTAPRISHQFKRTKNEIVSSRTSH
VKLVCVLPQRLETLITDIGQQPNATSRYMKLVELGDHMISIPEESLTAST
RVSGCFSITHISVHLCAHGTVSLRGYSDARISRGLVALLALGLDGCFIED
ILKLDLNEVLRRAVLPEGIGPSRINGLANIFREIQRQVRVLRNRLPSAQN
NDEHVLTGRWSERQGEDVAVLLSGGVDSSVAMRLALENGARVHPFYLKIW
LDDELAHMGECPWEEDIEYANDVCKQVGVKLHDVPFQRAYWDEVVSYTVQ
EAQKGRTPNPDILCNSRIKFGAFYDKIGKHYERIVTGHYAQTTKDESGRV
ELRLSRDELKDQTYFLAHLRQDQLATASFPVGKYKKGEIRKLAEVYNLPN
KARRDSQGICFLGKLKFNDFLDHHLGQRKGSLVEFETGQELGYHNGYWFF
TLGQRRGVGLSGGPWYVVAKDVPQNIVYVSKDYNSVSKERKRFDFDSVLW
ISGQWPKQLRDPGDTLRVRVKTRHGPRFHDAMLTRLDDDDKGRVELDSRD
KGLAPGQFSAFYDYEGRCLGSGVIKSDVSLSDAPAEVRSLRLLSKKLQAH
FL*

mRNA from alignment at tig00000106_pilon:1081345..1083153+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3020.t1 ID=Gchil3020.t1|Name=Gchil3020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00000106_pilon:1081345..1083153+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTGCCTAAGCGAAGACGGGGCTCGCGGATTCTGGGTTTTATTCC
AGGTTTGGTTCCACCTTCATCTCAGACCCGCACCGCTCCTAGAATCAGTC
ACCAATTCAAGCGAACGAAGAATGAAATAGTCAGTTCTCGAACCAGCCAT
GTAAAATTGGTTTGCGTTCTTCCACAGCGACTGGAGACTTTGATTACCGA
TATAGGACAACAGCCAAACGCTACATCTCGATATATGAAACTGGTCGAGC
TCGGTGACCATATGATTTCCATTCCCGAAGAAAGTCTTACGGCTTCTACC
AGGGTTTCTGGATGTTTTTCAATAACTCACATCAGTGTGCATCTCTGTGC
TCATGGTACCGTAAGCTTACGAGGATATTCAGATGCCCGTATTTCACGCG
GGCTGGTTGCTTTACTTGCGCTCGGACTCGATGGATGTTTTATTGAAGAT
ATACTCAAACTAGATTTAAATGAGGTGCTGCGCAGGGCTGTTCTACCCGA
AGGCATTGGTCCATCTCGGATTAATGGTCTCGCCAACATTTTCCGAGAAA
TTCAGAGACAGGTTCGTGTTCTTAGGAATAGGCTTCCCAGTGCGCAGAAC
AACGATGAACACGTTTTGACCGGCAGGTGGAGCGAACGGCAAGGAGAGGA
TGTTGCCGTCTTGCTTTCTGGTGGCGTAGACAGTTCAGTAGCAATGCGTC
TTGCTCTTGAAAATGGAGCTAGAGTTCATCCCTTTTACCTAAAGATATGG
CTTGACGATGAATTAGCACACATGGGAGAATGTCCATGGGAGGAAGATAT
AGAGTATGCGAACGATGTTTGCAAACAAGTTGGCGTAAAATTGCACGACG
TTCCATTCCAGCGAGCATACTGGGACGAAGTTGTATCGTATACAGTTCAA
GAAGCTCAAAAAGGACGTACCCCGAACCCGGACATATTGTGCAATTCTAG
GATAAAGTTTGGTGCATTCTATGATAAGATTGGAAAGCACTATGAAAGAA
TTGTAACAGGCCACTACGCTCAAACCACAAAAGACGAGTCTGGGAGAGTG
GAGCTAAGACTGTCACGGGATGAGTTAAAAGACCAGACATACTTCCTAGC
CCATTTAAGACAAGACCAGCTTGCCACAGCTTCTTTTCCAGTTGGAAAAT
ATAAAAAGGGTGAAATCCGAAAGCTTGCTGAAGTCTACAATCTTCCAAAC
AAAGCTCGTCGAGATTCGCAGGGGATATGTTTTCTGGGAAAATTGAAATT
CAACGACTTCCTTGATCATCACCTTGGTCAAAGGAAAGGATCACTTGTCG
AATTTGAAACCGGTCAAGAACTCGGTTATCACAATGGCTATTGGTTCTTT
ACTCTGGGTCAGAGGAGGGGAGTTGGATTGTCCGGCGGGCCTTGGTACGT
TGTAGCCAAGGATGTACCACAAAACATTGTATATGTAAGCAAGGACTACA
ACAGTGTATCGAAAGAACGGAAACGTTTTGATTTTGACTCGGTTCTCTGG
ATTTCCGGGCAATGGCCGAAACAACTACGAGATCCAGGTGACACGTTGCG
AGTGAGAGTGAAGACTAGACATGGACCTCGATTTCATGACGCTATGCTGA
CGAGGTTGGATGATGATGACAAGGGCCGAGTCGAACTAGACTCGAGGGAT
AAAGGACTTGCTCCTGGTCAATTTTCAGCATTTTATGACTACGAAGGAAG
ATGCCTTGGTTCGGGCGTAATTAAGTCTGATGTTTCCTTGTCCGACGCAC
CTGCTGAAGTAAGGAGCCTTCGCTTGCTTTCAAAGAAGCTCCAAGCACAT
TTTCTGTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:1081345..1083153+

>Gchil3020.t1 ID=Gchil3020.t1|Name=Gchil3020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1809bp|location=Sequence derived from alignment at tig00000106_pilon:1081345..1083153+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGTTGCCTAAGCGAAGACGGGGCTCGCGGATTCTGGGTTTTATTCC
AGGTTTGGTTCCACCTTCATCTCAGACCCGCACCGCTCCTAGAATCAGTC
ACCAATTCAAGCGAACGAAGAATGAAATAGTCAGTTCTCGAACCAGCCAT
GTAAAATTGGTTTGCGTTCTTCCACAGCGACTGGAGACTTTGATTACCGA
TATAGGACAACAGCCAAACGCTACATCTCGATATATGAAACTGGTCGAGC
TCGGTGACCATATGATTTCCATTCCCGAAGAAAGTCTTACGGCTTCTACC
AGGGTTTCTGGATGTTTTTCAATAACTCACATCAGTGTGCATCTCTGTGC
TCATGGTACCGTAAGCTTACGAGGATATTCAGATGCCCGTATTTCACGCG
GGCTGGTTGCTTTACTTGCGCTCGGACTCGATGGATGTTTTATTGAAGAT
ATACTCAAACTAGATTTAAATGAGGTGCTGCGCAGGGCTGTTCTACCCGA
AGGCATTGGTCCATCTCGGATTAATGGTCTCGCCAACATTTTCCGAGAAA
TTCAGAGACAGGTTCGTGTTCTTAGGAATAGGCTTCCCAGTGCGCAGAAC
AACGATGAACACGTTTTGACCGGCAGGTGGAGCGAACGGCAAGGAGAGGA
TGTTGCCGTCTTGCTTTCTGGTGGCGTAGACAGTTCAGTAGCAATGCGTC
TTGCTCTTGAAAATGGAGCTAGAGTTCATCCCTTTTACCTAAAGATATGG
CTTGACGATGAATTAGCACACATGGGAGAATGTCCATGGGAGGAAGATAT
AGAGTATGCGAACGATGTTTGCAAACAAGTTGGCGTAAAATTGCACGACG
TTCCATTCCAGCGAGCATACTGGGACGAAGTTGTATCGTATACAGTTCAA
GAAGCTCAAAAAGGACGTACCCCGAACCCGGACATATTGTGCAATTCTAG
GATAAAGTTTGGTGCATTCTATGATAAGATTGGAAAGCACTATGAAAGAA
TTGTAACAGGCCACTACGCTCAAACCACAAAAGACGAGTCTGGGAGAGTG
GAGCTAAGACTGTCACGGGATGAGTTAAAAGACCAGACATACTTCCTAGC
CCATTTAAGACAAGACCAGCTTGCCACAGCTTCTTTTCCAGTTGGAAAAT
ATAAAAAGGGTGAAATCCGAAAGCTTGCTGAAGTCTACAATCTTCCAAAC
AAAGCTCGTCGAGATTCGCAGGGGATATGTTTTCTGGGAAAATTGAAATT
CAACGACTTCCTTGATCATCACCTTGGTCAAAGGAAAGGATCACTTGTCG
AATTTGAAACCGGTCAAGAACTCGGTTATCACAATGGCTATTGGTTCTTT
ACTCTGGGTCAGAGGAGGGGAGTTGGATTGTCCGGCGGGCCTTGGTACGT
TGTAGCCAAGGATGTACCACAAAACATTGTATATGTAAGCAAGGACTACA
ACAGTGTATCGAAAGAACGGAAACGTTTTGATTTTGACTCGGTTCTCTGG
ATTTCCGGGCAATGGCCGAAACAACTACGAGATCCAGGTGACACGTTGCG
AGTGAGAGTGAAGACTAGACATGGACCTCGATTTCATGACGCTATGCTGA
CGAGGTTGGATGATGATGACAAGGGCCGAGTCGAACTAGACTCGAGGGAT
AAAGGACTTGCTCCTGGTCAATTTTCAGCATTTTATGACTACGAAGGAAG
ATGCCTTGGTTCGGGCGTAATTAAGTCTGATGTTTCCTTGTCCGACGCAC
CTGCTGAAGTAAGGAGCCTTCGCTTGCTTTCAAAGAAGCTCCAAGCACAT
TTTCTGTGA