Gchil3018.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3018.t1
Unique Name	Gchil3018.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1076022..1076951 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb02g031090.1
PFAMs	PI-PLC-X
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue	6.26e-09
EggNOG OGs	KOG4306@1\|root,KOG4306@2759\|Eukaryota,37IGN@33090\|Viridiplantae,3GC8Y@35493\|Streptophyta,3KXWZ@4447\|Liliopsida,3I5HS@38820\|Poales
Description	Phosphatidylinositol-specific phospholipase C, X domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3018	Gchil3018	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1076022..1076951 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3018.t1.start1	Gchil3018.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1076022..1076024 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3018.t1.CDS1	Gchil3018.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1076022..1076951 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3018.t1.exon1	Gchil3018.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1076022..1076951 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3018.t1.stop1	Gchil3018.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1076949..1076951 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3018.t1	Gchil3018.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1076022..1076951 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1076022..1076951+
coding sequence from alignment at tig00000106_pilon:1076022..1076951+

mRNA sequence

>Gchil3018.t1 ID=Gchil3018.t1|Name=Gchil3018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=310bp
MSTDSSASIDSDSLTLYDLLLPGTHDSAAYVIRPDLASRSTALPLRVRAI
RTYLSTVQADFALTQKLTVYHQLQAGARFLDIRVSKRPPASDDGQFWTVH
GMVLCVPLVDILRQINCFHQHTDSAHTVIIVFRAQFLHPSEEIQLAHFVR
HTLKHTIFDGCEAQLRKVPFSELPPNVIAGLCGMPLSVEWGRDAWIDTYS
CDRKISFLQSVLQAYKSRFCRNDLFVLGWTVTPSVWDVTIRVLSLGYFRP
SVKSEAANMNARFDEFMNANSLALRQRCNVIFFDCFSRKLGTMVNSLNSL
SQSSYPWHS*

spliced messenger RNA

>Gchil3018.t1 ID=Gchil3018.t1|Name=Gchil3018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000106_pilon:1076022..1076951+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCGATTCCTCGGCCTCCATTGACTCAGATTCACTCACTTTGTA
CGACTTATTGTTACCAGGCACACACGATTCCGCTGCCTACGTCATTCGCC
CAGACCTAGCATCGCGTTCTACAGCATTGCCTCTTCGCGTGCGTGCCATA
CGCACCTATCTTTCTACGGTACAAGCTGATTTCGCCCTCACGCAGAAGCT
CACAGTTTACCATCAACTTCAAGCTGGGGCAAGATTCCTTGACATACGAG
TCTCGAAGCGCCCCCCCGCTTCGGATGATGGCCAGTTTTGGACCGTACAT
GGTATGGTATTGTGTGTTCCTCTCGTGGACATTTTACGACAGATTAACTG
CTTTCATCAACACACCGACTCGGCGCACACCGTTATCATAGTTTTTCGCG
CTCAGTTTCTGCATCCTTCCGAGGAGATCCAATTAGCACACTTTGTACGC
CACACTCTGAAACACACCATTTTTGACGGTTGTGAAGCGCAACTCCGAAA
AGTTCCGTTCTCTGAATTACCCCCTAATGTTATCGCTGGTCTATGTGGGA
TGCCATTATCCGTAGAATGGGGCCGCGATGCCTGGATCGACACCTACTCC
TGTGATCGAAAGATATCCTTTCTTCAATCCGTTTTGCAAGCCTACAAATC
ACGTTTCTGTCGAAACGACCTGTTTGTATTAGGTTGGACCGTAACCCCTT
CTGTATGGGATGTCACTATACGAGTCTTATCTCTGGGCTATTTCAGACCA
TCTGTCAAGTCAGAAGCTGCAAACATGAACGCCCGATTCGATGAGTTTAT
GAACGCCAACTCGCTAGCGCTACGGCAACGTTGTAATGTAATCTTCTTTG
ACTGCTTTTCAAGAAAGCTGGGCACAATGGTCAACTCACTCAACTCTTTA
TCACAAAGCTCGTATCCTTGGCATTCATGA

protein sequence of Gchil3018.t1

>Gchil3018.t1 ID=Gchil3018.t1|Name=Gchil3018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=310bp
MSTDSSASIDSDSLTLYDLLLPGTHDSAAYVIRPDLASRSTALPLRVRAI
RTYLSTVQADFALTQKLTVYHQLQAGARFLDIRVSKRPPASDDGQFWTVH
GMVLCVPLVDILRQINCFHQHTDSAHTVIIVFRAQFLHPSEEIQLAHFVR
HTLKHTIFDGCEAQLRKVPFSELPPNVIAGLCGMPLSVEWGRDAWIDTYS
CDRKISFLQSVLQAYKSRFCRNDLFVLGWTVTPSVWDVTIRVLSLGYFRP
SVKSEAANMNARFDEFMNANSLALRQRCNVIFFDCFSRKLGTMVNSLNSL
SQSSYPWHS*

mRNA from alignment at tig00000106_pilon:1076022..1076951+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3018.t1 ID=Gchil3018.t1|Name=Gchil3018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000106_pilon:1076022..1076951+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACCGATTCCTCGGCCTCCATTGACTCAGATTCACTCACTTTGTA
CGACTTATTGTTACCAGGCACACACGATTCCGCTGCCTACGTCATTCGCC
CAGACCTAGCATCGCGTTCTACAGCATTGCCTCTTCGCGTGCGTGCCATA
CGCACCTATCTTTCTACGGTACAAGCTGATTTCGCCCTCACGCAGAAGCT
CACAGTTTACCATCAACTTCAAGCTGGGGCAAGATTCCTTGACATACGAG
TCTCGAAGCGCCCCCCCGCTTCGGATGATGGCCAGTTTTGGACCGTACAT
GGTATGGTATTGTGTGTTCCTCTCGTGGACATTTTACGACAGATTAACTG
CTTTCATCAACACACCGACTCGGCGCACACCGTTATCATAGTTTTTCGCG
CTCAGTTTCTGCATCCTTCCGAGGAGATCCAATTAGCACACTTTGTACGC
CACACTCTGAAACACACCATTTTTGACGGTTGTGAAGCGCAACTCCGAAA
AGTTCCGTTCTCTGAATTACCCCCTAATGTTATCGCTGGTCTATGTGGGA
TGCCATTATCCGTAGAATGGGGCCGCGATGCCTGGATCGACACCTACTCC
TGTGATCGAAAGATATCCTTTCTTCAATCCGTTTTGCAAGCCTACAAATC
ACGTTTCTGTCGAAACGACCTGTTTGTATTAGGTTGGACCGTAACCCCTT
CTGTATGGGATGTCACTATACGAGTCTTATCTCTGGGCTATTTCAGACCA
TCTGTCAAGTCAGAAGCTGCAAACATGAACGCCCGATTCGATGAGTTTAT
GAACGCCAACTCGCTAGCGCTACGGCAACGTTGTAATGTAATCTTCTTTG
ACTGCTTTTCAAGAAAGCTGGGCACAATGGTCAACTCACTCAACTCTTTA
TCACAAAGCTCGTATCCTTGGCATTCATGA

Coding sequence (CDS) from alignment at tig00000106_pilon:1076022..1076951+

>Gchil3018.t1 ID=Gchil3018.t1|Name=Gchil3018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000106_pilon:1076022..1076951+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACCGATTCCTCGGCCTCCATTGACTCAGATTCACTCACTTTGTA
CGACTTATTGTTACCAGGCACACACGATTCCGCTGCCTACGTCATTCGCC
CAGACCTAGCATCGCGTTCTACAGCATTGCCTCTTCGCGTGCGTGCCATA
CGCACCTATCTTTCTACGGTACAAGCTGATTTCGCCCTCACGCAGAAGCT
CACAGTTTACCATCAACTTCAAGCTGGGGCAAGATTCCTTGACATACGAG
TCTCGAAGCGCCCCCCCGCTTCGGATGATGGCCAGTTTTGGACCGTACAT
GGTATGGTATTGTGTGTTCCTCTCGTGGACATTTTACGACAGATTAACTG
CTTTCATCAACACACCGACTCGGCGCACACCGTTATCATAGTTTTTCGCG
CTCAGTTTCTGCATCCTTCCGAGGAGATCCAATTAGCACACTTTGTACGC
CACACTCTGAAACACACCATTTTTGACGGTTGTGAAGCGCAACTCCGAAA
AGTTCCGTTCTCTGAATTACCCCCTAATGTTATCGCTGGTCTATGTGGGA
TGCCATTATCCGTAGAATGGGGCCGCGATGCCTGGATCGACACCTACTCC
TGTGATCGAAAGATATCCTTTCTTCAATCCGTTTTGCAAGCCTACAAATC
ACGTTTCTGTCGAAACGACCTGTTTGTATTAGGTTGGACCGTAACCCCTT
CTGTATGGGATGTCACTATACGAGTCTTATCTCTGGGCTATTTCAGACCA
TCTGTCAAGTCAGAAGCTGCAAACATGAACGCCCGATTCGATGAGTTTAT
GAACGCCAACTCGCTAGCGCTACGGCAACGTTGTAATGTAATCTTCTTTG
ACTGCTTTTCAAGAAAGCTGGGCACAATGGTCAACTCACTCAACTCTTTA
TCACAAAGCTCGTATCCTTGGCATTCATGA