Gchil3013.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3013.t1
Unique NameGchil3013.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1021151..1022236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702778.1
Preferred nameRAE1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
GOsGO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728
Evalue9.73e-140
EggNOG OGsKOG0647@1|root,KOG0647@2759|Eukaryota
Descriptiontranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
COG categoryS
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3013Gchil3013Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1021151..1022236 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3013.t1.stop1Gchil3013.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1021151..1021153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3013.t1.CDS1Gchil3013.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1021151..1022236 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3013.t1.exon1Gchil3013.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1021151..1022236 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3013.t1.start1Gchil3013.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1022234..1022236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3013.t1Gchil3013.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1021151..1022236 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3013.t1 ID=Gchil3013.t1|Name=Gchil3013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=362bp
MSFAAGNANAPHNPNNDVLLNQPPNDTVQSLAFSPQTLAPKSFLLSGSWD
NEVRCWEVQSNGQSNPVGMKQHQGPVLDVAWSADGQAVFSAGADKVARMW
QLSSNNQTTIAAHDDVIRHVFYCKDMGNGSPCLVTGSWDKTIKYWDVRAP
TGTPMGSVPLSERVYCMDVRAPLLVVGTADRKLRVYDIRKPAVVYHEKMA
QLKYQFRCLATFPDQSGYAVGSIEGRVSIDHVHEKDRKNLDFAFKCHRDP
DNSVIYPVNSISFHEQHGTFATAGGDGGFNFWDKDNKHRLKQFQRVNQPI
TATAFSTDGNIFAYAVGYDWSKGAAHHNPTTDRKYILLHAVQSAEVKGKR
SSNKLVGGTRR*
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spliced messenger RNA

>Gchil3013.t1 ID=Gchil3013.t1|Name=Gchil3013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000106_pilon:1021151..1022236- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTTGCCGCGGGAAACGCTAACGCTCCACACAATCCGAATAATGA
TGTTCTTCTCAATCAGCCGCCGAATGATACGGTACAGTCCCTTGCTTTCT
CGCCCCAAACGTTGGCTCCGAAGTCGTTCCTCCTTTCCGGATCGTGGGAT
AATGAAGTACGATGTTGGGAGGTGCAGTCCAACGGACAATCCAACCCTGT
TGGTATGAAACAACATCAGGGACCGGTGCTTGACGTCGCGTGGAGCGCAG
ATGGTCAAGCTGTGTTTTCCGCAGGAGCCGACAAAGTAGCCCGAATGTGG
CAATTGAGCTCTAACAACCAAACTACAATTGCTGCTCACGATGATGTCAT
TCGACATGTATTTTACTGCAAGGATATGGGAAACGGCTCTCCGTGTCTTG
TGACTGGGTCATGGGATAAGACTATTAAGTACTGGGATGTGCGGGCTCCC
ACAGGGACTCCGATGGGATCCGTTCCTCTGTCCGAAAGAGTCTACTGTAT
GGATGTTCGAGCCCCATTGCTCGTTGTCGGAACGGCAGATAGAAAACTTC
GTGTATATGATATTCGTAAGCCCGCTGTGGTCTACCATGAAAAGATGGCA
CAACTCAAATACCAGTTCCGATGTCTGGCTACTTTCCCAGATCAGAGCGG
ATATGCTGTAGGCTCAATCGAAGGGCGTGTGAGTATTGATCATGTGCATG
AGAAAGACCGAAAGAATTTGGACTTTGCATTCAAATGCCATCGTGATCCG
GACAATAGCGTCATTTATCCAGTCAACTCGATTTCGTTCCACGAACAACA
CGGAACGTTTGCTACGGCGGGTGGGGACGGTGGTTTCAACTTTTGGGATA
AAGATAACAAGCATCGTCTCAAGCAGTTCCAAAGGGTCAACCAACCAATT
ACTGCGACAGCCTTCAGCACTGATGGAAACATTTTTGCGTACGCCGTTGG
TTACGATTGGAGCAAGGGAGCCGCCCATCACAACCCGACTACAGATCGAA
AGTATATATTGTTGCACGCAGTGCAATCGGCTGAGGTGAAGGGCAAGAGA
AGTTCCAACAAGCTAGTTGGTGGAACCCGACGCTAG
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protein sequence of Gchil3013.t1

>Gchil3013.t1 ID=Gchil3013.t1|Name=Gchil3013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=362bp
MSFAAGNANAPHNPNNDVLLNQPPNDTVQSLAFSPQTLAPKSFLLSGSWD
NEVRCWEVQSNGQSNPVGMKQHQGPVLDVAWSADGQAVFSAGADKVARMW
QLSSNNQTTIAAHDDVIRHVFYCKDMGNGSPCLVTGSWDKTIKYWDVRAP
TGTPMGSVPLSERVYCMDVRAPLLVVGTADRKLRVYDIRKPAVVYHEKMA
QLKYQFRCLATFPDQSGYAVGSIEGRVSIDHVHEKDRKNLDFAFKCHRDP
DNSVIYPVNSISFHEQHGTFATAGGDGGFNFWDKDNKHRLKQFQRVNQPI
TATAFSTDGNIFAYAVGYDWSKGAAHHNPTTDRKYILLHAVQSAEVKGKR
SSNKLVGGTRR*
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mRNA from alignment at tig00000106_pilon:1021151..1022236-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3013.t1 ID=Gchil3013.t1|Name=Gchil3013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000106_pilon:1021151..1022236- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATTTGCCGCGGGAAACGCTAACGCTCCACACAATCCGAATAATGA
TGTTCTTCTCAATCAGCCGCCGAATGATACGGTACAGTCCCTTGCTTTCT
CGCCCCAAACGTTGGCTCCGAAGTCGTTCCTCCTTTCCGGATCGTGGGAT
AATGAAGTACGATGTTGGGAGGTGCAGTCCAACGGACAATCCAACCCTGT
TGGTATGAAACAACATCAGGGACCGGTGCTTGACGTCGCGTGGAGCGCAG
ATGGTCAAGCTGTGTTTTCCGCAGGAGCCGACAAAGTAGCCCGAATGTGG
CAATTGAGCTCTAACAACCAAACTACAATTGCTGCTCACGATGATGTCAT
TCGACATGTATTTTACTGCAAGGATATGGGAAACGGCTCTCCGTGTCTTG
TGACTGGGTCATGGGATAAGACTATTAAGTACTGGGATGTGCGGGCTCCC
ACAGGGACTCCGATGGGATCCGTTCCTCTGTCCGAAAGAGTCTACTGTAT
GGATGTTCGAGCCCCATTGCTCGTTGTCGGAACGGCAGATAGAAAACTTC
GTGTATATGATATTCGTAAGCCCGCTGTGGTCTACCATGAAAAGATGGCA
CAACTCAAATACCAGTTCCGATGTCTGGCTACTTTCCCAGATCAGAGCGG
ATATGCTGTAGGCTCAATCGAAGGGCGTGTGAGTATTGATCATGTGCATG
AGAAAGACCGAAAGAATTTGGACTTTGCATTCAAATGCCATCGTGATCCG
GACAATAGCGTCATTTATCCAGTCAACTCGATTTCGTTCCACGAACAACA
CGGAACGTTTGCTACGGCGGGTGGGGACGGTGGTTTCAACTTTTGGGATA
AAGATAACAAGCATCGTCTCAAGCAGTTCCAAAGGGTCAACCAACCAATT
ACTGCGACAGCCTTCAGCACTGATGGAAACATTTTTGCGTACGCCGTTGG
TTACGATTGGAGCAAGGGAGCCGCCCATCACAACCCGACTACAGATCGAA
AGTATATATTGTTGCACGCAGTGCAATCGGCTGAGGTGAAGGGCAAGAGA
AGTTCCAACAAGCTAGTTGGTGGAACCCGACGCTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:1021151..1022236-

>Gchil3013.t1 ID=Gchil3013.t1|Name=Gchil3013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000106_pilon:1021151..1022236- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATTTGCCGCGGGAAACGCTAACGCTCCACACAATCCGAATAATGA
TGTTCTTCTCAATCAGCCGCCGAATGATACGGTACAGTCCCTTGCTTTCT
CGCCCCAAACGTTGGCTCCGAAGTCGTTCCTCCTTTCCGGATCGTGGGAT
AATGAAGTACGATGTTGGGAGGTGCAGTCCAACGGACAATCCAACCCTGT
TGGTATGAAACAACATCAGGGACCGGTGCTTGACGTCGCGTGGAGCGCAG
ATGGTCAAGCTGTGTTTTCCGCAGGAGCCGACAAAGTAGCCCGAATGTGG
CAATTGAGCTCTAACAACCAAACTACAATTGCTGCTCACGATGATGTCAT
TCGACATGTATTTTACTGCAAGGATATGGGAAACGGCTCTCCGTGTCTTG
TGACTGGGTCATGGGATAAGACTATTAAGTACTGGGATGTGCGGGCTCCC
ACAGGGACTCCGATGGGATCCGTTCCTCTGTCCGAAAGAGTCTACTGTAT
GGATGTTCGAGCCCCATTGCTCGTTGTCGGAACGGCAGATAGAAAACTTC
GTGTATATGATATTCGTAAGCCCGCTGTGGTCTACCATGAAAAGATGGCA
CAACTCAAATACCAGTTCCGATGTCTGGCTACTTTCCCAGATCAGAGCGG
ATATGCTGTAGGCTCAATCGAAGGGCGTGTGAGTATTGATCATGTGCATG
AGAAAGACCGAAAGAATTTGGACTTTGCATTCAAATGCCATCGTGATCCG
GACAATAGCGTCATTTATCCAGTCAACTCGATTTCGTTCCACGAACAACA
CGGAACGTTTGCTACGGCGGGTGGGGACGGTGGTTTCAACTTTTGGGATA
AAGATAACAAGCATCGTCTCAAGCAGTTCCAAAGGGTCAACCAACCAATT
ACTGCGACAGCCTTCAGCACTGATGGAAACATTTTTGCGTACGCCGTTGG
TTACGATTGGAGCAAGGGAGCCGCCCATCACAACCCGACTACAGATCGAA
AGTATATATTGTTGCACGCAGTGCAATCGGCTGAGGTGAAGGGCAAGAGA
AGTTCCAACAAGCTAGTTGGTGGAACCCGACGCTAG
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