Gchil3009.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3009.t1
Unique Name	Gchil3009.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1015410..1017050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707431.1
PFAMs	PMT,PMT_4TMC,RRM_1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00059,RC00397
KEGG ko	ko:K00728
KEGG Reaction	R04072,R07620,R11399
KEGG Pathway	ko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue	1.2e-89
EggNOG OGs	COG1928@1\|root,KOG3359@2759\|Eukaryota
EC	2.4.1.109
Description	dolichyl-phosphate-mannose-protein mannosyltransferase activity
COG category	O
CAZy	GT39
BRITE	ko00000,ko00001,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3009	Gchil3009	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1015410..1017050 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3009.t1.start1	Gchil3009.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1015410..1015412 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3009.t1.CDS1	Gchil3009.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1015410..1017050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3009.t1.exon1	Gchil3009.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1015410..1017050 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3009.t1.stop1	Gchil3009.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1017048..1017050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3009.t1	Gchil3009.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1015410..1017050 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1015410..1017050+
coding sequence from alignment at tig00000106_pilon:1015410..1017050+

mRNA sequence

>Gchil3009.t1 ID=Gchil3009.t1|Name=Gchil3009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=547bp
MTTSKQSELRRRRPKPGGGNQTYLTAFDAAEKPLKFGAVKGKSPDSGAKL
NKPRYANVTRPRVFTVYQTVLDWIIMVVLFVAAGIVRFYRLAYPDVVIFD
EVHYLSFNNHVLNGTYFFDVNPVWGKVVMAFIAKLVGYDPSYDLPALGEK
LSTPFQAFAARAPCAFFGTLTVPVFYKVCRWLHLSTYASVVGSAFILFDS
MHVIQSRVAMVDALLVFWTCFSVICAFTLWDQKNFIIFKGKDVKFSSVAK
MIMLLVVTGINCGLSISVRWTAFATPVLIFIISFFGVGPFLVEPLNLIEL
LVLYTSAFAGYCGSFLVFLLQVNKSGSGDGFMSPDFQACLQGNKHAQPGT
CEMSYAARIWEINKQIFNYSKHIRGKDKWGSSWFQWIINWRGALYYKWYD
TPKKLLAVIYILMNPFMTLLINLLMIAFVAGLFYVVRYRKQLSINEALKA
HLRRGSVMFFGWVLSMLPTMVVYRSGPVYQYLPGLFFAQALAAVGFDFIP
RKLRPIACIIVVAILVAGFVYWSPWVYGTVLSEEEHIRRRWLPRWD*

spliced messenger RNA

>Gchil3009.t1 ID=Gchil3009.t1|Name=Gchil3009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000106_pilon:1015410..1017050+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACTTCTAAGCAGTCCGAGCTGCGACGTCGGCGCCCAAAACCGGG
CGGGGGCAACCAGACATATCTTACAGCGTTTGACGCCGCCGAGAAGCCGC
TAAAGTTTGGTGCGGTGAAGGGGAAAAGTCCTGATTCTGGCGCGAAGTTG
AACAAACCACGTTACGCAAATGTGACGCGTCCTCGCGTTTTCACCGTGTA
TCAGACAGTTTTAGACTGGATTATCATGGTGGTTCTGTTCGTGGCAGCGG
GAATTGTGCGTTTTTATCGTCTTGCCTATCCAGATGTTGTAATCTTTGAT
GAAGTACATTATTTATCCTTCAATAATCATGTGTTGAACGGAACATATTT
TTTCGATGTGAATCCGGTTTGGGGAAAAGTCGTCATGGCATTCATCGCAA
AATTGGTTGGGTATGACCCATCCTATGATCTACCTGCTCTTGGTGAAAAA
CTTTCTACACCCTTTCAGGCGTTTGCGGCTCGTGCCCCTTGTGCTTTCTT
CGGTACGCTTACGGTGCCCGTATTTTACAAGGTTTGCAGATGGTTGCATC
TTAGCACTTATGCATCAGTTGTCGGGTCTGCATTCATTTTGTTTGATTCT
ATGCATGTCATTCAAAGTCGGGTCGCCATGGTCGATGCTTTGCTTGTGTT
CTGGACTTGCTTTTCTGTCATCTGTGCTTTTACTTTGTGGGATCAGAAGA
ATTTTATCATTTTTAAGGGTAAGGATGTCAAATTTTCCTCTGTGGCTAAG
ATGATCATGCTGCTCGTTGTCACTGGCATCAATTGCGGTCTATCAATATC
TGTGAGGTGGACTGCGTTTGCTACTCCAGTGCTAATCTTCATCATCAGCT
TTTTTGGCGTGGGTCCTTTTCTTGTCGAACCTCTTAATCTTATCGAATTG
TTGGTGTTGTACACAAGTGCATTTGCTGGGTATTGCGGCTCGTTCTTGGT
ATTCTTATTGCAAGTAAACAAATCGGGCTCGGGCGACGGTTTTATGAGCC
CCGATTTCCAGGCTTGTCTGCAAGGGAACAAACACGCACAACCCGGTACT
TGTGAAATGTCGTATGCAGCGCGTATATGGGAGATTAACAAGCAGATTTT
TAACTACTCCAAGCACATCCGTGGTAAGGACAAATGGGGATCCTCATGGT
TTCAATGGATCATCAATTGGAGAGGGGCATTGTATTACAAATGGTATGAT
ACGCCAAAGAAGTTATTGGCTGTCATATACATTCTGATGAACCCTTTCAT
GACACTGTTGATTAACTTATTGATGATCGCGTTTGTCGCGGGATTGTTCT
ACGTTGTACGGTATCGTAAGCAGCTGTCTATCAACGAGGCGTTGAAGGCC
CATCTGCGACGAGGAAGTGTGATGTTCTTTGGTTGGGTATTAAGTATGCT
GCCAACGATGGTGGTGTATAGATCAGGCCCGGTTTATCAGTATCTACCTG
GCTTATTCTTTGCGCAGGCATTAGCTGCAGTCGGCTTCGATTTTATTCCC
AGAAAGCTTCGCCCAATTGCATGCATCATAGTTGTGGCGATACTTGTGGC
AGGGTTTGTGTACTGGAGTCCCTGGGTGTATGGCACTGTTCTTTCGGAAG
AGGAACACATAAGACGAAGGTGGCTACCCCGGTGGGATTAG

protein sequence of Gchil3009.t1

>Gchil3009.t1 ID=Gchil3009.t1|Name=Gchil3009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=547bp
MTTSKQSELRRRRPKPGGGNQTYLTAFDAAEKPLKFGAVKGKSPDSGAKL
NKPRYANVTRPRVFTVYQTVLDWIIMVVLFVAAGIVRFYRLAYPDVVIFD
EVHYLSFNNHVLNGTYFFDVNPVWGKVVMAFIAKLVGYDPSYDLPALGEK
LSTPFQAFAARAPCAFFGTLTVPVFYKVCRWLHLSTYASVVGSAFILFDS
MHVIQSRVAMVDALLVFWTCFSVICAFTLWDQKNFIIFKGKDVKFSSVAK
MIMLLVVTGINCGLSISVRWTAFATPVLIFIISFFGVGPFLVEPLNLIEL
LVLYTSAFAGYCGSFLVFLLQVNKSGSGDGFMSPDFQACLQGNKHAQPGT
CEMSYAARIWEINKQIFNYSKHIRGKDKWGSSWFQWIINWRGALYYKWYD
TPKKLLAVIYILMNPFMTLLINLLMIAFVAGLFYVVRYRKQLSINEALKA
HLRRGSVMFFGWVLSMLPTMVVYRSGPVYQYLPGLFFAQALAAVGFDFIP
RKLRPIACIIVVAILVAGFVYWSPWVYGTVLSEEEHIRRRWLPRWD*

mRNA from alignment at tig00000106_pilon:1015410..1017050+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3009.t1 ID=Gchil3009.t1|Name=Gchil3009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00000106_pilon:1015410..1017050+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACTTCTAAGCAGTCCGAGCTGCGACGTCGGCGCCCAAAACCGGG
CGGGGGCAACCAGACATATCTTACAGCGTTTGACGCCGCCGAGAAGCCGC
TAAAGTTTGGTGCGGTGAAGGGGAAAAGTCCTGATTCTGGCGCGAAGTTG
AACAAACCACGTTACGCAAATGTGACGCGTCCTCGCGTTTTCACCGTGTA
TCAGACAGTTTTAGACTGGATTATCATGGTGGTTCTGTTCGTGGCAGCGG
GAATTGTGCGTTTTTATCGTCTTGCCTATCCAGATGTTGTAATCTTTGAT
GAAGTACATTATTTATCCTTCAATAATCATGTGTTGAACGGAACATATTT
TTTCGATGTGAATCCGGTTTGGGGAAAAGTCGTCATGGCATTCATCGCAA
AATTGGTTGGGTATGACCCATCCTATGATCTACCTGCTCTTGGTGAAAAA
CTTTCTACACCCTTTCAGGCGTTTGCGGCTCGTGCCCCTTGTGCTTTCTT
CGGTACGCTTACGGTGCCCGTATTTTACAAGGTTTGCAGATGGTTGCATC
TTAGCACTTATGCATCAGTTGTCGGGTCTGCATTCATTTTGTTTGATTCT
ATGCATGTCATTCAAAGTCGGGTCGCCATGGTCGATGCTTTGCTTGTGTT
CTGGACTTGCTTTTCTGTCATCTGTGCTTTTACTTTGTGGGATCAGAAGA
ATTTTATCATTTTTAAGGGTAAGGATGTCAAATTTTCCTCTGTGGCTAAG
ATGATCATGCTGCTCGTTGTCACTGGCATCAATTGCGGTCTATCAATATC
TGTGAGGTGGACTGCGTTTGCTACTCCAGTGCTAATCTTCATCATCAGCT
TTTTTGGCGTGGGTCCTTTTCTTGTCGAACCTCTTAATCTTATCGAATTG
TTGGTGTTGTACACAAGTGCATTTGCTGGGTATTGCGGCTCGTTCTTGGT
ATTCTTATTGCAAGTAAACAAATCGGGCTCGGGCGACGGTTTTATGAGCC
CCGATTTCCAGGCTTGTCTGCAAGGGAACAAACACGCACAACCCGGTACT
TGTGAAATGTCGTATGCAGCGCGTATATGGGAGATTAACAAGCAGATTTT
TAACTACTCCAAGCACATCCGTGGTAAGGACAAATGGGGATCCTCATGGT
TTCAATGGATCATCAATTGGAGAGGGGCATTGTATTACAAATGGTATGAT
ACGCCAAAGAAGTTATTGGCTGTCATATACATTCTGATGAACCCTTTCAT
GACACTGTTGATTAACTTATTGATGATCGCGTTTGTCGCGGGATTGTTCT
ACGTTGTACGGTATCGTAAGCAGCTGTCTATCAACGAGGCGTTGAAGGCC
CATCTGCGACGAGGAAGTGTGATGTTCTTTGGTTGGGTATTAAGTATGCT
GCCAACGATGGTGGTGTATAGATCAGGCCCGGTTTATCAGTATCTACCTG
GCTTATTCTTTGCGCAGGCATTAGCTGCAGTCGGCTTCGATTTTATTCCC
AGAAAGCTTCGCCCAATTGCATGCATCATAGTTGTGGCGATACTTGTGGC
AGGGTTTGTGTACTGGAGTCCCTGGGTGTATGGCACTGTTCTTTCGGAAG
AGGAACACATAAGACGAAGGTGGCTACCCCGGTGGGATTAG

Coding sequence (CDS) from alignment at tig00000106_pilon:1015410..1017050+

>Gchil3009.t1 ID=Gchil3009.t1|Name=Gchil3009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00000106_pilon:1015410..1017050+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACTTCTAAGCAGTCCGAGCTGCGACGTCGGCGCCCAAAACCGGG
CGGGGGCAACCAGACATATCTTACAGCGTTTGACGCCGCCGAGAAGCCGC
TAAAGTTTGGTGCGGTGAAGGGGAAAAGTCCTGATTCTGGCGCGAAGTTG
AACAAACCACGTTACGCAAATGTGACGCGTCCTCGCGTTTTCACCGTGTA
TCAGACAGTTTTAGACTGGATTATCATGGTGGTTCTGTTCGTGGCAGCGG
GAATTGTGCGTTTTTATCGTCTTGCCTATCCAGATGTTGTAATCTTTGAT
GAAGTACATTATTTATCCTTCAATAATCATGTGTTGAACGGAACATATTT
TTTCGATGTGAATCCGGTTTGGGGAAAAGTCGTCATGGCATTCATCGCAA
AATTGGTTGGGTATGACCCATCCTATGATCTACCTGCTCTTGGTGAAAAA
CTTTCTACACCCTTTCAGGCGTTTGCGGCTCGTGCCCCTTGTGCTTTCTT
CGGTACGCTTACGGTGCCCGTATTTTACAAGGTTTGCAGATGGTTGCATC
TTAGCACTTATGCATCAGTTGTCGGGTCTGCATTCATTTTGTTTGATTCT
ATGCATGTCATTCAAAGTCGGGTCGCCATGGTCGATGCTTTGCTTGTGTT
CTGGACTTGCTTTTCTGTCATCTGTGCTTTTACTTTGTGGGATCAGAAGA
ATTTTATCATTTTTAAGGGTAAGGATGTCAAATTTTCCTCTGTGGCTAAG
ATGATCATGCTGCTCGTTGTCACTGGCATCAATTGCGGTCTATCAATATC
TGTGAGGTGGACTGCGTTTGCTACTCCAGTGCTAATCTTCATCATCAGCT
TTTTTGGCGTGGGTCCTTTTCTTGTCGAACCTCTTAATCTTATCGAATTG
TTGGTGTTGTACACAAGTGCATTTGCTGGGTATTGCGGCTCGTTCTTGGT
ATTCTTATTGCAAGTAAACAAATCGGGCTCGGGCGACGGTTTTATGAGCC
CCGATTTCCAGGCTTGTCTGCAAGGGAACAAACACGCACAACCCGGTACT
TGTGAAATGTCGTATGCAGCGCGTATATGGGAGATTAACAAGCAGATTTT
TAACTACTCCAAGCACATCCGTGGTAAGGACAAATGGGGATCCTCATGGT
TTCAATGGATCATCAATTGGAGAGGGGCATTGTATTACAAATGGTATGAT
ACGCCAAAGAAGTTATTGGCTGTCATATACATTCTGATGAACCCTTTCAT
GACACTGTTGATTAACTTATTGATGATCGCGTTTGTCGCGGGATTGTTCT
ACGTTGTACGGTATCGTAAGCAGCTGTCTATCAACGAGGCGTTGAAGGCC
CATCTGCGACGAGGAAGTGTGATGTTCTTTGGTTGGGTATTAAGTATGCT
GCCAACGATGGTGGTGTATAGATCAGGCCCGGTTTATCAGTATCTACCTG
GCTTATTCTTTGCGCAGGCATTAGCTGCAGTCGGCTTCGATTTTATTCCC
AGAAAGCTTCGCCCAATTGCATGCATCATAGTTGTGGCGATACTTGTGGC
AGGGTTTGTGTACTGGAGTCCCTGGGTGTATGGCACTGTTCTTTCGGAAG
AGGAACACATAAGACGAAGGTGGCTACCCCGGTGGGATTAG