Gchil2999.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2999.t1
Unique NameGchil2999.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:890305..890829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705593.1
PFAMsADK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K13800
KEGG ReactionR00127,R00158,R00512,R01547,R01665,R11319,R11891,R11892
KEGG Pathwayko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,map00230,map00240,map00730,map00983,map01100,map01110,map01130
KEGG ModuleM00049,M00052
Evalue1.66e-38
EggNOG OGsCOG0563@1|root,KOG3079@2759|Eukaryota
EC2.7.4.14,2.7.4.3
Descriptioncytidylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2999Gchil2999Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 890305..890829 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2999.t1.stop1Gchil2999.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 890305..890307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2999.t1.CDS1Gchil2999.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 890305..890829 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2999.t1.exon1Gchil2999.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 890305..890829 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2999.t1.start1Gchil2999.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 890827..890829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2999.t1Gchil2999.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 890305..890829 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2999.t1 ID=Gchil2999.t1|Name=Gchil2999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MLRRDFDLAQVCVGDLLREEAKNDTPLGHSIAGIMQRGDIVPGHVTMGLL
RDELQKLAGTCDGILIDGFPRAMDQAKEFERVIAACEFVLFIKCSTTTMV
ERLLKRGTTSGRSDDVEEVVCRRLDTFQKKTMPVVEHYRNKGMLHVVESD
VGDIEQVYQKTKQIFEPALPRKEQ*
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spliced messenger RNA

>Gchil2999.t1 ID=Gchil2999.t1|Name=Gchil2999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000106_pilon:890305..890829- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAGGCGTGATTTTGATCTGGCTCAGGTCTGTGTAGGTGATCTACT
CAGAGAGGAGGCCAAGAACGACACACCGCTCGGCCATAGCATTGCGGGAA
TAATGCAAAGAGGAGATATTGTTCCAGGACATGTGACAATGGGCCTGCTC
CGGGACGAGCTACAGAAGCTTGCCGGTACTTGTGACGGTATTTTAATTGA
TGGCTTTCCACGAGCAATGGACCAAGCCAAGGAATTCGAGCGTGTGATCG
CGGCGTGTGAGTTTGTACTGTTTATAAAGTGCTCAACAACGACCATGGTC
GAACGCCTCCTGAAGCGTGGCACCACGAGCGGTCGTTCAGATGATGTAGA
AGAAGTGGTGTGCAGACGTTTGGACACATTTCAGAAAAAGACCATGCCGG
TCGTGGAGCACTATCGGAATAAGGGAATGCTGCATGTTGTAGAGTCTGAT
GTTGGCGATATCGAACAAGTCTACCAAAAGACGAAACAAATTTTTGAGCC
AGCACTTCCGCGAAAAGAGCAGTAG
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protein sequence of Gchil2999.t1

>Gchil2999.t1 ID=Gchil2999.t1|Name=Gchil2999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MLRRDFDLAQVCVGDLLREEAKNDTPLGHSIAGIMQRGDIVPGHVTMGLL
RDELQKLAGTCDGILIDGFPRAMDQAKEFERVIAACEFVLFIKCSTTTMV
ERLLKRGTTSGRSDDVEEVVCRRLDTFQKKTMPVVEHYRNKGMLHVVESD
VGDIEQVYQKTKQIFEPALPRKEQ*
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mRNA from alignment at tig00000106_pilon:890305..890829-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2999.t1 ID=Gchil2999.t1|Name=Gchil2999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000106_pilon:890305..890829- (Gracilaria chilensis NLEC103_M9 male)
ATGCTAAGGCGTGATTTTGATCTGGCTCAGGTCTGTGTAGGTGATCTACT
CAGAGAGGAGGCCAAGAACGACACACCGCTCGGCCATAGCATTGCGGGAA
TAATGCAAAGAGGAGATATTGTTCCAGGACATGTGACAATGGGCCTGCTC
CGGGACGAGCTACAGAAGCTTGCCGGTACTTGTGACGGTATTTTAATTGA
TGGCTTTCCACGAGCAATGGACCAAGCCAAGGAATTCGAGCGTGTGATCG
CGGCGTGTGAGTTTGTACTGTTTATAAAGTGCTCAACAACGACCATGGTC
GAACGCCTCCTGAAGCGTGGCACCACGAGCGGTCGTTCAGATGATGTAGA
AGAAGTGGTGTGCAGACGTTTGGACACATTTCAGAAAAAGACCATGCCGG
TCGTGGAGCACTATCGGAATAAGGGAATGCTGCATGTTGTAGAGTCTGAT
GTTGGCGATATCGAACAAGTCTACCAAAAGACGAAACAAATTTTTGAGCC
AGCACTTCCGCGAAAAGAGCAGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:890305..890829-

>Gchil2999.t1 ID=Gchil2999.t1|Name=Gchil2999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000106_pilon:890305..890829- (Gracilaria chilensis NLEC103_M9 male)
ATGCTAAGGCGTGATTTTGATCTGGCTCAGGTCTGTGTAGGTGATCTACT
CAGAGAGGAGGCCAAGAACGACACACCGCTCGGCCATAGCATTGCGGGAA
TAATGCAAAGAGGAGATATTGTTCCAGGACATGTGACAATGGGCCTGCTC
CGGGACGAGCTACAGAAGCTTGCCGGTACTTGTGACGGTATTTTAATTGA
TGGCTTTCCACGAGCAATGGACCAAGCCAAGGAATTCGAGCGTGTGATCG
CGGCGTGTGAGTTTGTACTGTTTATAAAGTGCTCAACAACGACCATGGTC
GAACGCCTCCTGAAGCGTGGCACCACGAGCGGTCGTTCAGATGATGTAGA
AGAAGTGGTGTGCAGACGTTTGGACACATTTCAGAAAAAGACCATGCCGG
TCGTGGAGCACTATCGGAATAAGGGAATGCTGCATGTTGTAGAGTCTGAT
GTTGGCGATATCGAACAAGTCTACCAAAAGACGAAACAAATTTTTGAGCC
AGCACTTCCGCGAAAAGAGCAGTAG
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