Gchil2998.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2998.t1
Unique Name	Gchil2998.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	405

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:888879..890093 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	32049.SYNPCC7002_A0123
Preferred name	der
PFAMs	KH_dom-like,MMR_HSR1
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00031
KEGG ko	ko:K00058,ko:K03977
KEGG Reaction	R01513
KEGG Pathway	ko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG Module	M00020
Evalue	3.48e-164
EggNOG OGs	COG1160@1\|root,COG1160@2\|Bacteria,1G00M@1117\|Cyanobacteria,1GZ51@1129\|Synechococcus
EC	1.1.1.399,1.1.1.95
Description	GTPase that plays an essential role in the late steps of ribosome biogenesis
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2998	Gchil2998	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 888879..890093 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2998.t1.start1	Gchil2998.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 888879..888881 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2998.t1.CDS1	Gchil2998.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 888879..890093 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2998.t1.exon1	Gchil2998.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 888879..890093 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2998.t1.stop1	Gchil2998.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 890091..890093 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2998.t1	Gchil2998.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 888879..890093 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:888879..890093+
coding sequence from alignment at tig00000106_pilon:888879..890093+

mRNA sequence

>Gchil2998.t1 ID=Gchil2998.t1|Name=Gchil2998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp
MYRPTEWGGYHFRVVDTGGLVFDDQSTFLPEIRSQAMIAIEEAAAVVLCV
DGQAGLNPLDIDLADFLRKSASNVPVFVAVNKCESHHGSVMAIDFWELGL
GEPIPVSAIHGSGTGDLLDSVVAAIPKVDVVAEDEVINVAIVGRPNVGKS
SLLNLLTGSERAIVSEVPGTTRDAVDEVITVHSKKYRLIDTAGIRRKTNV
SFGTEFFMINRAFKAIRRADVVLLMLDVTESSEQDRKIADRIVDEGKACV
VLANKWDLVPDKDNSIYKKATEAVQERTVSISWAPIELISVLEKKRVSKV
ISLVDEALEQHRRRVSTAVLNEVLRDAVEWHKPPSTRAAKQGRIYYCTQV
ASRPPTIAMFVNDPRLFHDNYRRYMMGQFRKALGFFGTPVRLVWRGKARA
PTLG*

spliced messenger RNA

>Gchil2998.t1 ID=Gchil2998.t1|Name=Gchil2998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000106_pilon:888879..890093+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGCCCGACCGAGTGGGGCGGCTATCATTTTCGCGTTGTCGATAC
TGGTGGGCTTGTTTTTGATGACCAGTCGACTTTTCTTCCTGAGATTAGAT
CTCAGGCTATGATTGCCATAGAAGAGGCTGCTGCAGTTGTTTTGTGTGTT
GATGGACAAGCGGGGTTGAATCCTCTCGACATTGACCTAGCCGACTTCTT
GAGGAAGTCGGCCTCTAACGTTCCCGTTTTTGTAGCTGTCAATAAGTGTG
AGAGCCACCACGGCTCAGTCATGGCTATCGATTTCTGGGAGTTGGGCCTC
GGAGAGCCGATTCCGGTTAGCGCTATACATGGCAGTGGGACTGGGGATCT
TCTCGATAGCGTCGTCGCAGCTATCCCGAAGGTTGATGTTGTCGCGGAAG
ATGAAGTCATCAACGTGGCCATTGTGGGACGACCGAACGTTGGAAAGAGC
AGTCTGCTAAACCTATTAACTGGTAGTGAACGTGCCATCGTCAGTGAGGT
TCCCGGTACTACACGCGATGCAGTTGACGAGGTTATTACTGTTCACAGCA
AGAAATATCGCCTCATCGATACTGCTGGTATACGGCGGAAGACGAACGTG
TCTTTTGGAACCGAATTCTTCATGATAAATCGCGCATTTAAAGCCATTCG
ACGTGCAGACGTAGTACTGCTGATGCTAGACGTCACAGAGTCTTCAGAGC
AAGACAGGAAGATTGCAGACCGAATTGTTGATGAAGGTAAGGCGTGCGTC
GTGTTGGCGAATAAGTGGGACCTTGTGCCCGACAAAGACAATAGTATCTA
CAAAAAAGCGACAGAAGCTGTGCAAGAGCGAACAGTATCTATCTCATGGG
CACCCATTGAACTTATTTCTGTTTTGGAGAAGAAAAGAGTCAGCAAAGTA
ATATCTTTGGTTGATGAGGCTTTGGAGCAACATCGCAGACGTGTGTCGAC
AGCTGTTCTAAATGAGGTATTACGGGATGCAGTTGAATGGCACAAGCCCC
CGAGCACCAGAGCAGCAAAGCAAGGACGAATTTATTATTGCACGCAAGTA
GCCAGCAGACCTCCGACCATTGCAATGTTTGTCAATGATCCACGACTCTT
CCATGACAATTACCGAAGATACATGATGGGTCAGTTTCGGAAAGCTCTCG
GATTCTTTGGCACGCCGGTGCGGCTCGTGTGGAGGGGCAAAGCAAGGGCT
CCGACCCTTGGGTAA

protein sequence of Gchil2998.t1

>Gchil2998.t1 ID=Gchil2998.t1|Name=Gchil2998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=405bp
MYRPTEWGGYHFRVVDTGGLVFDDQSTFLPEIRSQAMIAIEEAAAVVLCV
DGQAGLNPLDIDLADFLRKSASNVPVFVAVNKCESHHGSVMAIDFWELGL
GEPIPVSAIHGSGTGDLLDSVVAAIPKVDVVAEDEVINVAIVGRPNVGKS
SLLNLLTGSERAIVSEVPGTTRDAVDEVITVHSKKYRLIDTAGIRRKTNV
SFGTEFFMINRAFKAIRRADVVLLMLDVTESSEQDRKIADRIVDEGKACV
VLANKWDLVPDKDNSIYKKATEAVQERTVSISWAPIELISVLEKKRVSKV
ISLVDEALEQHRRRVSTAVLNEVLRDAVEWHKPPSTRAAKQGRIYYCTQV
ASRPPTIAMFVNDPRLFHDNYRRYMMGQFRKALGFFGTPVRLVWRGKARA
PTLG*

mRNA from alignment at tig00000106_pilon:888879..890093+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2998.t1 ID=Gchil2998.t1|Name=Gchil2998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000106_pilon:888879..890093+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATCGCCCGACCGAGTGGGGCGGCTATCATTTTCGCGTTGTCGATAC
TGGTGGGCTTGTTTTTGATGACCAGTCGACTTTTCTTCCTGAGATTAGAT
CTCAGGCTATGATTGCCATAGAAGAGGCTGCTGCAGTTGTTTTGTGTGTT
GATGGACAAGCGGGGTTGAATCCTCTCGACATTGACCTAGCCGACTTCTT
GAGGAAGTCGGCCTCTAACGTTCCCGTTTTTGTAGCTGTCAATAAGTGTG
AGAGCCACCACGGCTCAGTCATGGCTATCGATTTCTGGGAGTTGGGCCTC
GGAGAGCCGATTCCGGTTAGCGCTATACATGGCAGTGGGACTGGGGATCT
TCTCGATAGCGTCGTCGCAGCTATCCCGAAGGTTGATGTTGTCGCGGAAG
ATGAAGTCATCAACGTGGCCATTGTGGGACGACCGAACGTTGGAAAGAGC
AGTCTGCTAAACCTATTAACTGGTAGTGAACGTGCCATCGTCAGTGAGGT
TCCCGGTACTACACGCGATGCAGTTGACGAGGTTATTACTGTTCACAGCA
AGAAATATCGCCTCATCGATACTGCTGGTATACGGCGGAAGACGAACGTG
TCTTTTGGAACCGAATTCTTCATGATAAATCGCGCATTTAAAGCCATTCG
ACGTGCAGACGTAGTACTGCTGATGCTAGACGTCACAGAGTCTTCAGAGC
AAGACAGGAAGATTGCAGACCGAATTGTTGATGAAGGTAAGGCGTGCGTC
GTGTTGGCGAATAAGTGGGACCTTGTGCCCGACAAAGACAATAGTATCTA
CAAAAAAGCGACAGAAGCTGTGCAAGAGCGAACAGTATCTATCTCATGGG
CACCCATTGAACTTATTTCTGTTTTGGAGAAGAAAAGAGTCAGCAAAGTA
ATATCTTTGGTTGATGAGGCTTTGGAGCAACATCGCAGACGTGTGTCGAC
AGCTGTTCTAAATGAGGTATTACGGGATGCAGTTGAATGGCACAAGCCCC
CGAGCACCAGAGCAGCAAAGCAAGGACGAATTTATTATTGCACGCAAGTA
GCCAGCAGACCTCCGACCATTGCAATGTTTGTCAATGATCCACGACTCTT
CCATGACAATTACCGAAGATACATGATGGGTCAGTTTCGGAAAGCTCTCG
GATTCTTTGGCACGCCGGTGCGGCTCGTGTGGAGGGGCAAAGCAAGGGCT
CCGACCCTTGGGTAA

Coding sequence (CDS) from alignment at tig00000106_pilon:888879..890093+

>Gchil2998.t1 ID=Gchil2998.t1|Name=Gchil2998.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00000106_pilon:888879..890093+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATCGCCCGACCGAGTGGGGCGGCTATCATTTTCGCGTTGTCGATAC
TGGTGGGCTTGTTTTTGATGACCAGTCGACTTTTCTTCCTGAGATTAGAT
CTCAGGCTATGATTGCCATAGAAGAGGCTGCTGCAGTTGTTTTGTGTGTT
GATGGACAAGCGGGGTTGAATCCTCTCGACATTGACCTAGCCGACTTCTT
GAGGAAGTCGGCCTCTAACGTTCCCGTTTTTGTAGCTGTCAATAAGTGTG
AGAGCCACCACGGCTCAGTCATGGCTATCGATTTCTGGGAGTTGGGCCTC
GGAGAGCCGATTCCGGTTAGCGCTATACATGGCAGTGGGACTGGGGATCT
TCTCGATAGCGTCGTCGCAGCTATCCCGAAGGTTGATGTTGTCGCGGAAG
ATGAAGTCATCAACGTGGCCATTGTGGGACGACCGAACGTTGGAAAGAGC
AGTCTGCTAAACCTATTAACTGGTAGTGAACGTGCCATCGTCAGTGAGGT
TCCCGGTACTACACGCGATGCAGTTGACGAGGTTATTACTGTTCACAGCA
AGAAATATCGCCTCATCGATACTGCTGGTATACGGCGGAAGACGAACGTG
TCTTTTGGAACCGAATTCTTCATGATAAATCGCGCATTTAAAGCCATTCG
ACGTGCAGACGTAGTACTGCTGATGCTAGACGTCACAGAGTCTTCAGAGC
AAGACAGGAAGATTGCAGACCGAATTGTTGATGAAGGTAAGGCGTGCGTC
GTGTTGGCGAATAAGTGGGACCTTGTGCCCGACAAAGACAATAGTATCTA
CAAAAAAGCGACAGAAGCTGTGCAAGAGCGAACAGTATCTATCTCATGGG
CACCCATTGAACTTATTTCTGTTTTGGAGAAGAAAAGAGTCAGCAAAGTA
ATATCTTTGGTTGATGAGGCTTTGGAGCAACATCGCAGACGTGTGTCGAC
AGCTGTTCTAAATGAGGTATTACGGGATGCAGTTGAATGGCACAAGCCCC
CGAGCACCAGAGCAGCAAAGCAAGGACGAATTTATTATTGCACGCAAGTA
GCCAGCAGACCTCCGACCATTGCAATGTTTGTCAATGATCCACGACTCTT
CCATGACAATTACCGAAGATACATGATGGGTCAGTTTCGGAAAGCTCTCG
GATTCTTTGGCACGCCGGTGCGGCTCGTGTGGAGGGGCAAAGCAAGGGCT
CCGACCCTTGGGTAA