Gchil2995.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2995.t1
Unique NameGchil2995.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:805191..806579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122179.KB890434_gene841
Max annot lvl976|Bacteroidetes
Evalue6.95e-15
EggNOG OGsCOG3291@1|root,COG3291@2|Bacteria,4NGJJ@976|Bacteroidetes
Descriptioncellulose binding
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2995Gchil2995Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 805191..806579 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2995.t1.stop1Gchil2995.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 805191..805193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2995.t1.CDS1Gchil2995.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 805191..806579 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2995.t1.exon1Gchil2995.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 805191..806579 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2995.t1.start1Gchil2995.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 806577..806579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2995.t1Gchil2995.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 805191..806579 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2995.t1 ID=Gchil2995.t1|Name=Gchil2995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=463bp
MRSVPIAALLLTLKLMHVVCAQIDKPASDTHYARTLHAFGNASTYRVDIY
GIHNDSNVFPALQYAFNILSNAWTSKVVVNTRVTFTDLGPPNALATGGGV
LFVRFDASPDRELLPIAAAEAMTSVDLNARETGFDKYDVLVKVNHATPWH
VNLQEHTPDDVYDIVTVMLHEVYHNLIFSGAITIDSSSLEAQHAFLLDGY
PARFDLFLANQDNCAVLDYLEDSELALSSNATNGQLLAESVTNHRLFFHD
PESGVRIPLYAPESYSIKSSIYHTVSSHGYDDDVMSYSIPAGFQDHTISR
EVLQIQKAILDPNHRGAKHCEFPLANPMAHQATMSNKISSPGAVGKAPKD
VRNDTKREAPSTFHIPKWAIIVACGAGALACISLVLGLVAAVGRHMKMRK
SLFSSGTSHGKRSSIASSGEILIDDEFSVDHHEFDIRDLAIEEHEFTVLE
YQVPNRDTNISQ*
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spliced messenger RNA

>Gchil2995.t1 ID=Gchil2995.t1|Name=Gchil2995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000106_pilon:805191..806579- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCTGTGCCCATCGCAGCACTGCTGCTGACGTTGAAGTTGATGCA
TGTAGTATGCGCGCAAATCGATAAGCCTGCATCGGATACACACTATGCCA
GAACCTTGCACGCCTTCGGAAACGCATCCACTTACCGCGTTGATATTTAT
GGAATCCACAACGATTCTAATGTCTTTCCCGCTTTGCAATACGCTTTCAA
TATATTATCTAATGCATGGACTTCGAAGGTTGTCGTAAACACTCGCGTCA
CGTTTACAGACTTGGGACCGCCTAATGCACTGGCAACTGGTGGAGGTGTG
CTCTTCGTCCGTTTTGATGCCTCTCCTGACCGGGAACTGTTACCCATTGC
TGCTGCAGAAGCTATGACCTCCGTCGATTTGAACGCCCGTGAGACAGGTT
TCGACAAGTACGATGTGTTGGTAAAGGTAAATCATGCCACTCCTTGGCAT
GTCAACCTACAAGAACACACCCCGGATGACGTGTACGACATTGTTACCGT
AATGCTGCACGAAGTCTATCATAATTTAATCTTCTCCGGAGCCATTACGA
TTGACTCTTCAAGCCTGGAAGCGCAGCATGCATTTCTCTTAGATGGCTAC
CCCGCTCGATTCGACCTCTTTCTTGCTAATCAAGACAATTGCGCTGTGTT
GGATTACCTTGAGGATTCGGAGCTAGCTTTATCTTCGAATGCAACGAATG
GTCAACTTCTTGCCGAGTCTGTCACCAACCACCGCTTATTCTTTCACGAT
CCTGAATCAGGTGTGCGCATTCCACTTTACGCCCCTGAAAGTTACAGCAT
CAAGAGTTCCATATATCATACCGTAAGTTCACATGGTTATGATGACGACG
TAATGAGTTACTCGATTCCAGCTGGTTTCCAAGACCATACGATCAGCAGA
GAAGTGCTCCAGATCCAAAAAGCGATACTCGATCCAAATCATCGCGGCGC
CAAACATTGTGAATTTCCTTTGGCAAACCCCATGGCACATCAAGCAACGA
TGTCGAACAAGATTTCTTCGCCGGGGGCGGTTGGGAAGGCTCCCAAAGAT
GTGCGAAATGATACAAAACGCGAGGCTCCATCAACCTTTCACATTCCGAA
ATGGGCGATAATCGTTGCTTGTGGGGCTGGTGCTTTGGCTTGCATCTCTC
TCGTACTTGGGCTTGTTGCTGCCGTCGGAAGACACATGAAGATGAGGAAA
AGTCTTTTTAGTAGTGGTACCTCTCACGGGAAACGGTCCAGCATTGCGTC
AAGTGGAGAAATTCTCATTGATGATGAATTCTCTGTAGACCACCATGAGT
TTGATATTCGAGACCTTGCAATTGAGGAACATGAATTCACTGTTTTGGAA
TATCAAGTCCCTAATCGAGATACCAATATTTCTCAGTAG
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protein sequence of Gchil2995.t1

>Gchil2995.t1 ID=Gchil2995.t1|Name=Gchil2995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=463bp
MRSVPIAALLLTLKLMHVVCAQIDKPASDTHYARTLHAFGNASTYRVDIY
GIHNDSNVFPALQYAFNILSNAWTSKVVVNTRVTFTDLGPPNALATGGGV
LFVRFDASPDRELLPIAAAEAMTSVDLNARETGFDKYDVLVKVNHATPWH
VNLQEHTPDDVYDIVTVMLHEVYHNLIFSGAITIDSSSLEAQHAFLLDGY
PARFDLFLANQDNCAVLDYLEDSELALSSNATNGQLLAESVTNHRLFFHD
PESGVRIPLYAPESYSIKSSIYHTVSSHGYDDDVMSYSIPAGFQDHTISR
EVLQIQKAILDPNHRGAKHCEFPLANPMAHQATMSNKISSPGAVGKAPKD
VRNDTKREAPSTFHIPKWAIIVACGAGALACISLVLGLVAAVGRHMKMRK
SLFSSGTSHGKRSSIASSGEILIDDEFSVDHHEFDIRDLAIEEHEFTVLE
YQVPNRDTNISQ*
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mRNA from alignment at tig00000106_pilon:805191..806579-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2995.t1 ID=Gchil2995.t1|Name=Gchil2995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000106_pilon:805191..806579- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTCTGTGCCCATCGCAGCACTGCTGCTGACGTTGAAGTTGATGCA
TGTAGTATGCGCGCAAATCGATAAGCCTGCATCGGATACACACTATGCCA
GAACCTTGCACGCCTTCGGAAACGCATCCACTTACCGCGTTGATATTTAT
GGAATCCACAACGATTCTAATGTCTTTCCCGCTTTGCAATACGCTTTCAA
TATATTATCTAATGCATGGACTTCGAAGGTTGTCGTAAACACTCGCGTCA
CGTTTACAGACTTGGGACCGCCTAATGCACTGGCAACTGGTGGAGGTGTG
CTCTTCGTCCGTTTTGATGCCTCTCCTGACCGGGAACTGTTACCCATTGC
TGCTGCAGAAGCTATGACCTCCGTCGATTTGAACGCCCGTGAGACAGGTT
TCGACAAGTACGATGTGTTGGTAAAGGTAAATCATGCCACTCCTTGGCAT
GTCAACCTACAAGAACACACCCCGGATGACGTGTACGACATTGTTACCGT
AATGCTGCACGAAGTCTATCATAATTTAATCTTCTCCGGAGCCATTACGA
TTGACTCTTCAAGCCTGGAAGCGCAGCATGCATTTCTCTTAGATGGCTAC
CCCGCTCGATTCGACCTCTTTCTTGCTAATCAAGACAATTGCGCTGTGTT
GGATTACCTTGAGGATTCGGAGCTAGCTTTATCTTCGAATGCAACGAATG
GTCAACTTCTTGCCGAGTCTGTCACCAACCACCGCTTATTCTTTCACGAT
CCTGAATCAGGTGTGCGCATTCCACTTTACGCCCCTGAAAGTTACAGCAT
CAAGAGTTCCATATATCATACCGTAAGTTCACATGGTTATGATGACGACG
TAATGAGTTACTCGATTCCAGCTGGTTTCCAAGACCATACGATCAGCAGA
GAAGTGCTCCAGATCCAAAAAGCGATACTCGATCCAAATCATCGCGGCGC
CAAACATTGTGAATTTCCTTTGGCAAACCCCATGGCACATCAAGCAACGA
TGTCGAACAAGATTTCTTCGCCGGGGGCGGTTGGGAAGGCTCCCAAAGAT
GTGCGAAATGATACAAAACGCGAGGCTCCATCAACCTTTCACATTCCGAA
ATGGGCGATAATCGTTGCTTGTGGGGCTGGTGCTTTGGCTTGCATCTCTC
TCGTACTTGGGCTTGTTGCTGCCGTCGGAAGACACATGAAGATGAGGAAA
AGTCTTTTTAGTAGTGGTACCTCTCACGGGAAACGGTCCAGCATTGCGTC
AAGTGGAGAAATTCTCATTGATGATGAATTCTCTGTAGACCACCATGAGT
TTGATATTCGAGACCTTGCAATTGAGGAACATGAATTCACTGTTTTGGAA
TATCAAGTCCCTAATCGAGATACCAATATTTCTCAGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:805191..806579-

>Gchil2995.t1 ID=Gchil2995.t1|Name=Gchil2995.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000106_pilon:805191..806579- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTCTGTGCCCATCGCAGCACTGCTGCTGACGTTGAAGTTGATGCA
TGTAGTATGCGCGCAAATCGATAAGCCTGCATCGGATACACACTATGCCA
GAACCTTGCACGCCTTCGGAAACGCATCCACTTACCGCGTTGATATTTAT
GGAATCCACAACGATTCTAATGTCTTTCCCGCTTTGCAATACGCTTTCAA
TATATTATCTAATGCATGGACTTCGAAGGTTGTCGTAAACACTCGCGTCA
CGTTTACAGACTTGGGACCGCCTAATGCACTGGCAACTGGTGGAGGTGTG
CTCTTCGTCCGTTTTGATGCCTCTCCTGACCGGGAACTGTTACCCATTGC
TGCTGCAGAAGCTATGACCTCCGTCGATTTGAACGCCCGTGAGACAGGTT
TCGACAAGTACGATGTGTTGGTAAAGGTAAATCATGCCACTCCTTGGCAT
GTCAACCTACAAGAACACACCCCGGATGACGTGTACGACATTGTTACCGT
AATGCTGCACGAAGTCTATCATAATTTAATCTTCTCCGGAGCCATTACGA
TTGACTCTTCAAGCCTGGAAGCGCAGCATGCATTTCTCTTAGATGGCTAC
CCCGCTCGATTCGACCTCTTTCTTGCTAATCAAGACAATTGCGCTGTGTT
GGATTACCTTGAGGATTCGGAGCTAGCTTTATCTTCGAATGCAACGAATG
GTCAACTTCTTGCCGAGTCTGTCACCAACCACCGCTTATTCTTTCACGAT
CCTGAATCAGGTGTGCGCATTCCACTTTACGCCCCTGAAAGTTACAGCAT
CAAGAGTTCCATATATCATACCGTAAGTTCACATGGTTATGATGACGACG
TAATGAGTTACTCGATTCCAGCTGGTTTCCAAGACCATACGATCAGCAGA
GAAGTGCTCCAGATCCAAAAAGCGATACTCGATCCAAATCATCGCGGCGC
CAAACATTGTGAATTTCCTTTGGCAAACCCCATGGCACATCAAGCAACGA
TGTCGAACAAGATTTCTTCGCCGGGGGCGGTTGGGAAGGCTCCCAAAGAT
GTGCGAAATGATACAAAACGCGAGGCTCCATCAACCTTTCACATTCCGAA
ATGGGCGATAATCGTTGCTTGTGGGGCTGGTGCTTTGGCTTGCATCTCTC
TCGTACTTGGGCTTGTTGCTGCCGTCGGAAGACACATGAAGATGAGGAAA
AGTCTTTTTAGTAGTGGTACCTCTCACGGGAAACGGTCCAGCATTGCGTC
AAGTGGAGAAATTCTCATTGATGATGAATTCTCTGTAGACCACCATGAGT
TTGATATTCGAGACCTTGCAATTGAGGAACATGAATTCACTGTTTTGGAA
TATCAAGTCCCTAATCGAGATACCAATATTTCTCAGTAG
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