Gchil2991.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2991.t1
Unique NameGchil2991.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:708220..709863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705121.1
PFAMsHGTP_anticodon,ProRS-C_1,WHEP-TRS,tRNA-synt_2b,tRNA_edit
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01881
KEGG ReactionR03661
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue2.78e-224
EggNOG OGsCOG0442@1|root,KOG4163@2759|Eukaryota
EC6.1.1.15
Descriptionsynthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2991Gchil2991Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 708220..709863 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2991.t1.stop1Gchil2991.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 708220..708222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2991.t1.CDS1Gchil2991.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 708220..709863 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2991.t1.exon1Gchil2991.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 708220..709863 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2991.t1.start1Gchil2991.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 709861..709863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2991.t1Gchil2991.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 708220..709863 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2991.t1 ID=Gchil2991.t1|Name=Gchil2991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=548bp
MMAFQIHIPISRTQALNRNVCMRYRAPIRNVVQNAAKADSGANQKDATTR
TTTITPRDEDYSQWYLDVISAADLAESSPVKGCLVIKPHGYAIWELLRDK
LDTAIKKSGAKNAYFPLLIPQSFLSKEAEHVDGFAKECAVVTHHRLRANP
DAPPGTLEPDPEAELEDKLVVRPTSETIIWYMFGRWIQSYRDLPLMINQW
ANVVRWEMRTRPFLRTTEFLWQEGHTAHADEGEAHAKALEMIRVYRDIAE
NWLALPVIVGRKSPSERFAGAEETYTIESMMQNGWALQAGTSHFLGQNFA
KAFDVQYKAPEGSEQYVWATSWGMTTRMIGALIMTHSDDVGLVLPPTIAP
VQVVLVLIFKNNNDQQVVGSFAELVAERLKRAGIRYEVDDRPNMRPGAKY
YEWERKGVPLRMEIGPKDAKKEAVFSAKRTGGKKWSTPIDDNFENATLAV
LKDIQLEMFESARRRLSDRTSAPATYEEFKQSLERGDAHGFLSVPWKCDA
SNERKVKEETKATLRCYPIDGQDDLEGKKCIYSGEQATHMAIFARAY*
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spliced messenger RNA

>Gchil2991.t1 ID=Gchil2991.t1|Name=Gchil2991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000106_pilon:708220..709863- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCATTTCAGATTCACATTCCGATTTCTCGCACCCAAGCATTGAA
CCGCAATGTTTGTATGCGTTACCGTGCCCCCATACGAAACGTCGTGCAAA
ATGCAGCGAAGGCCGATAGTGGTGCCAACCAGAAAGACGCGACCACCCGC
ACCACGACTATTACCCCTCGTGATGAAGACTATTCTCAATGGTATCTTGA
TGTCATTTCGGCAGCCGATCTTGCCGAATCCTCCCCGGTAAAGGGCTGCC
TAGTGATTAAACCACATGGATACGCTATTTGGGAATTGCTTCGCGATAAG
TTGGACACCGCAATCAAAAAATCTGGAGCAAAGAACGCATACTTCCCACT
TCTAATACCACAGTCTTTTCTTTCAAAAGAGGCAGAACACGTTGACGGTT
TTGCGAAAGAGTGTGCTGTGGTCACTCATCATCGACTACGCGCCAACCCT
GATGCGCCTCCCGGAACATTGGAACCAGACCCAGAGGCTGAACTGGAGGA
TAAACTTGTAGTAAGGCCAACATCAGAAACAATCATCTGGTACATGTTCG
GTCGTTGGATACAAAGCTACCGAGACCTACCACTTATGATAAACCAGTGG
GCGAATGTTGTGCGGTGGGAGATGCGAACCAGACCATTCTTGCGAACGAC
AGAGTTCCTCTGGCAAGAGGGCCACACCGCCCATGCAGATGAAGGCGAGG
CTCATGCCAAAGCGCTTGAAATGATTCGAGTTTATCGAGATATCGCAGAA
AATTGGTTAGCTTTGCCCGTCATCGTGGGGAGAAAGTCTCCATCTGAACG
TTTTGCTGGTGCAGAGGAAACGTACACGATTGAATCCATGATGCAAAATG
GATGGGCTTTGCAAGCGGGTACTTCACATTTCCTAGGGCAGAACTTTGCG
AAGGCGTTTGATGTACAATACAAGGCGCCAGAGGGTTCTGAACAATATGT
TTGGGCAACCAGTTGGGGAATGACGACCCGTATGATCGGTGCGCTCATCA
TGACACATTCTGACGACGTTGGACTTGTGCTACCACCTACCATTGCGCCT
GTTCAAGTTGTTCTTGTTCTTATTTTTAAGAATAATAATGACCAGCAAGT
CGTTGGTTCATTTGCAGAATTAGTTGCGGAGCGCCTAAAACGAGCCGGAA
TAAGATATGAAGTGGACGATCGTCCAAACATGAGGCCAGGTGCAAAGTAC
TATGAATGGGAGAGAAAAGGAGTGCCGCTTAGAATGGAAATCGGTCCCAA
AGATGCCAAAAAGGAGGCTGTGTTTTCAGCAAAACGAACCGGTGGTAAGA
AATGGTCAACCCCGATTGATGACAACTTTGAAAACGCGACGCTCGCAGTT
CTAAAGGACATTCAACTAGAGATGTTTGAAAGTGCACGACGACGGCTTTC
AGACAGGACAAGCGCTCCCGCCACGTATGAAGAGTTTAAGCAGTCTCTGG
AACGAGGTGATGCACATGGGTTCTTGTCAGTTCCCTGGAAATGCGATGCC
TCAAATGAAAGGAAGGTCAAAGAAGAGACGAAAGCTACCTTAAGATGTTA
TCCGATAGACGGCCAGGATGATCTCGAGGGAAAGAAATGCATCTACTCTG
GAGAGCAGGCAACACACATGGCCATTTTTGCAAGGGCTTACTAA
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protein sequence of Gchil2991.t1

>Gchil2991.t1 ID=Gchil2991.t1|Name=Gchil2991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=548bp
MMAFQIHIPISRTQALNRNVCMRYRAPIRNVVQNAAKADSGANQKDATTR
TTTITPRDEDYSQWYLDVISAADLAESSPVKGCLVIKPHGYAIWELLRDK
LDTAIKKSGAKNAYFPLLIPQSFLSKEAEHVDGFAKECAVVTHHRLRANP
DAPPGTLEPDPEAELEDKLVVRPTSETIIWYMFGRWIQSYRDLPLMINQW
ANVVRWEMRTRPFLRTTEFLWQEGHTAHADEGEAHAKALEMIRVYRDIAE
NWLALPVIVGRKSPSERFAGAEETYTIESMMQNGWALQAGTSHFLGQNFA
KAFDVQYKAPEGSEQYVWATSWGMTTRMIGALIMTHSDDVGLVLPPTIAP
VQVVLVLIFKNNNDQQVVGSFAELVAERLKRAGIRYEVDDRPNMRPGAKY
YEWERKGVPLRMEIGPKDAKKEAVFSAKRTGGKKWSTPIDDNFENATLAV
LKDIQLEMFESARRRLSDRTSAPATYEEFKQSLERGDAHGFLSVPWKCDA
SNERKVKEETKATLRCYPIDGQDDLEGKKCIYSGEQATHMAIFARAY*
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mRNA from alignment at tig00000106_pilon:708220..709863-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2991.t1 ID=Gchil2991.t1|Name=Gchil2991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000106_pilon:708220..709863- (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCATTTCAGATTCACATTCCGATTTCTCGCACCCAAGCATTGAA
CCGCAATGTTTGTATGCGTTACCGTGCCCCCATACGAAACGTCGTGCAAA
ATGCAGCGAAGGCCGATAGTGGTGCCAACCAGAAAGACGCGACCACCCGC
ACCACGACTATTACCCCTCGTGATGAAGACTATTCTCAATGGTATCTTGA
TGTCATTTCGGCAGCCGATCTTGCCGAATCCTCCCCGGTAAAGGGCTGCC
TAGTGATTAAACCACATGGATACGCTATTTGGGAATTGCTTCGCGATAAG
TTGGACACCGCAATCAAAAAATCTGGAGCAAAGAACGCATACTTCCCACT
TCTAATACCACAGTCTTTTCTTTCAAAAGAGGCAGAACACGTTGACGGTT
TTGCGAAAGAGTGTGCTGTGGTCACTCATCATCGACTACGCGCCAACCCT
GATGCGCCTCCCGGAACATTGGAACCAGACCCAGAGGCTGAACTGGAGGA
TAAACTTGTAGTAAGGCCAACATCAGAAACAATCATCTGGTACATGTTCG
GTCGTTGGATACAAAGCTACCGAGACCTACCACTTATGATAAACCAGTGG
GCGAATGTTGTGCGGTGGGAGATGCGAACCAGACCATTCTTGCGAACGAC
AGAGTTCCTCTGGCAAGAGGGCCACACCGCCCATGCAGATGAAGGCGAGG
CTCATGCCAAAGCGCTTGAAATGATTCGAGTTTATCGAGATATCGCAGAA
AATTGGTTAGCTTTGCCCGTCATCGTGGGGAGAAAGTCTCCATCTGAACG
TTTTGCTGGTGCAGAGGAAACGTACACGATTGAATCCATGATGCAAAATG
GATGGGCTTTGCAAGCGGGTACTTCACATTTCCTAGGGCAGAACTTTGCG
AAGGCGTTTGATGTACAATACAAGGCGCCAGAGGGTTCTGAACAATATGT
TTGGGCAACCAGTTGGGGAATGACGACCCGTATGATCGGTGCGCTCATCA
TGACACATTCTGACGACGTTGGACTTGTGCTACCACCTACCATTGCGCCT
GTTCAAGTTGTTCTTGTTCTTATTTTTAAGAATAATAATGACCAGCAAGT
CGTTGGTTCATTTGCAGAATTAGTTGCGGAGCGCCTAAAACGAGCCGGAA
TAAGATATGAAGTGGACGATCGTCCAAACATGAGGCCAGGTGCAAAGTAC
TATGAATGGGAGAGAAAAGGAGTGCCGCTTAGAATGGAAATCGGTCCCAA
AGATGCCAAAAAGGAGGCTGTGTTTTCAGCAAAACGAACCGGTGGTAAGA
AATGGTCAACCCCGATTGATGACAACTTTGAAAACGCGACGCTCGCAGTT
CTAAAGGACATTCAACTAGAGATGTTTGAAAGTGCACGACGACGGCTTTC
AGACAGGACAAGCGCTCCCGCCACGTATGAAGAGTTTAAGCAGTCTCTGG
AACGAGGTGATGCACATGGGTTCTTGTCAGTTCCCTGGAAATGCGATGCC
TCAAATGAAAGGAAGGTCAAAGAAGAGACGAAAGCTACCTTAAGATGTTA
TCCGATAGACGGCCAGGATGATCTCGAGGGAAAGAAATGCATCTACTCTG
GAGAGCAGGCAACACACATGGCCATTTTTGCAAGGGCTTACTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:708220..709863-

>Gchil2991.t1 ID=Gchil2991.t1|Name=Gchil2991.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000106_pilon:708220..709863- (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCATTTCAGATTCACATTCCGATTTCTCGCACCCAAGCATTGAA
CCGCAATGTTTGTATGCGTTACCGTGCCCCCATACGAAACGTCGTGCAAA
ATGCAGCGAAGGCCGATAGTGGTGCCAACCAGAAAGACGCGACCACCCGC
ACCACGACTATTACCCCTCGTGATGAAGACTATTCTCAATGGTATCTTGA
TGTCATTTCGGCAGCCGATCTTGCCGAATCCTCCCCGGTAAAGGGCTGCC
TAGTGATTAAACCACATGGATACGCTATTTGGGAATTGCTTCGCGATAAG
TTGGACACCGCAATCAAAAAATCTGGAGCAAAGAACGCATACTTCCCACT
TCTAATACCACAGTCTTTTCTTTCAAAAGAGGCAGAACACGTTGACGGTT
TTGCGAAAGAGTGTGCTGTGGTCACTCATCATCGACTACGCGCCAACCCT
GATGCGCCTCCCGGAACATTGGAACCAGACCCAGAGGCTGAACTGGAGGA
TAAACTTGTAGTAAGGCCAACATCAGAAACAATCATCTGGTACATGTTCG
GTCGTTGGATACAAAGCTACCGAGACCTACCACTTATGATAAACCAGTGG
GCGAATGTTGTGCGGTGGGAGATGCGAACCAGACCATTCTTGCGAACGAC
AGAGTTCCTCTGGCAAGAGGGCCACACCGCCCATGCAGATGAAGGCGAGG
CTCATGCCAAAGCGCTTGAAATGATTCGAGTTTATCGAGATATCGCAGAA
AATTGGTTAGCTTTGCCCGTCATCGTGGGGAGAAAGTCTCCATCTGAACG
TTTTGCTGGTGCAGAGGAAACGTACACGATTGAATCCATGATGCAAAATG
GATGGGCTTTGCAAGCGGGTACTTCACATTTCCTAGGGCAGAACTTTGCG
AAGGCGTTTGATGTACAATACAAGGCGCCAGAGGGTTCTGAACAATATGT
TTGGGCAACCAGTTGGGGAATGACGACCCGTATGATCGGTGCGCTCATCA
TGACACATTCTGACGACGTTGGACTTGTGCTACCACCTACCATTGCGCCT
GTTCAAGTTGTTCTTGTTCTTATTTTTAAGAATAATAATGACCAGCAAGT
CGTTGGTTCATTTGCAGAATTAGTTGCGGAGCGCCTAAAACGAGCCGGAA
TAAGATATGAAGTGGACGATCGTCCAAACATGAGGCCAGGTGCAAAGTAC
TATGAATGGGAGAGAAAAGGAGTGCCGCTTAGAATGGAAATCGGTCCCAA
AGATGCCAAAAAGGAGGCTGTGTTTTCAGCAAAACGAACCGGTGGTAAGA
AATGGTCAACCCCGATTGATGACAACTTTGAAAACGCGACGCTCGCAGTT
CTAAAGGACATTCAACTAGAGATGTTTGAAAGTGCACGACGACGGCTTTC
AGACAGGACAAGCGCTCCCGCCACGTATGAAGAGTTTAAGCAGTCTCTGG
AACGAGGTGATGCACATGGGTTCTTGTCAGTTCCCTGGAAATGCGATGCC
TCAAATGAAAGGAAGGTCAAAGAAGAGACGAAAGCTACCTTAAGATGTTA
TCCGATAGACGGCCAGGATGATCTCGAGGGAAAGAAATGCATCTACTCTG
GAGAGCAGGCAACACACATGGCCATTTTTGCAAGGGCTTACTAA
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