Gchil2989.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2989.t1
Unique NameGchil2989.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length609
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:703713..705539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1136163.M565_ctg5P1409
PFAMsFAD_binding_6,Fer2,NAD_binding_1,Putative_PNPOx
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K07006
Evalue9.69e-122
EggNOG OGsCOG1018@1|root,COG3576@1|root,COG1018@2|Bacteria,COG3576@2|Bacteria,1MV41@1224|Proteobacteria,1RMPJ@1236|Gammaproteobacteria
DescriptionIs involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
COG categoryC
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2989Gchil2989Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 703713..705539 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2989.t1.stop1Gchil2989.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 703713..703715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2989.t1.CDS1Gchil2989.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 703713..705539 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2989.t1.exon1Gchil2989.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 703713..705539 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2989.t1.start1Gchil2989.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 705537..705539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2989.t1Gchil2989.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 703713..705539 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2989.t1 ID=Gchil2989.t1|Name=Gchil2989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=609bp
MTHFLQQPFHQGELLAQQLAGTQGVAAELGHGMSRSLPPTAVFNYMLQNL
NIIWLSTVTPCSNPLDASLWVSPVFGHAPDLAHASSTRLLQFHLQPLSDT
DVLRRNLSPLLTKNTALPAGVLIIDLDARRRYRTNGLLSLSSCPAESTEA
APHSLTLDMSVEEAFPNCPKYIQRRLLDPSTSEMPPVPHAIQYESDTKLS
PADTSLITAADTLFFGTYNPSTGLDANHRGGRPGFIRVTSDDSLYWPDYR
GNGMFQSFGNLQQNDKAGVTIFDFETGHLLQLSGSARVQWEKSAYPDVEA
AAERIVTFKVDHVRRSIGPVTNFRWNLSDYSPYNPIIPKQDASTELADDN
SIHVSLVKIVSEAPSVKTFRFLAPKYIPFLPGQYCTFEFDQLPGIDEKLL
PVVRTWTLSEAANSTKGDLTLEVSVKRKPGGLMSNWLHDNAKLGMRAKLL
GIGGEMTPFLDNNLPKKLLFISGGIGMTPNMAILRGIGARSKGNVGSQPD
IVFLHQEREYSEIPFQSELLRRARLSKGRTRLFFVISGENQISLAGEPED
ATLVSGRIGAALLREQVLDLADRTVFMCGPIGFMDKLRATLLDLGASPTR
IITEQFTF*
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spliced messenger RNA

>Gchil2989.t1 ID=Gchil2989.t1|Name=Gchil2989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000106_pilon:703713..705539- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCATTTCCTTCAACAGCCGTTTCATCAAGGCGAGCTGCTTGCGCA
GCAATTGGCAGGCACTCAGGGCGTAGCCGCTGAACTCGGACATGGCATGT
CGCGTTCATTGCCTCCCACAGCTGTCTTCAATTATATGTTGCAGAATCTC
AACATCATCTGGCTTTCCACCGTCACCCCATGCTCGAACCCGCTTGATGC
GTCACTTTGGGTCTCTCCCGTATTTGGCCATGCTCCCGATCTCGCTCATG
CTTCTTCCACGCGCTTATTGCAATTTCATCTTCAACCTTTGTCTGATACC
GATGTTCTTCGACGAAATCTCTCCCCATTGCTCACCAAAAATACCGCTTT
ACCGGCTGGCGTTTTAATCATCGATCTGGACGCGAGACGTCGCTATCGCA
CCAACGGGCTTCTGTCGCTTTCGAGCTGTCCCGCTGAGTCAACAGAAGCT
GCGCCTCATTCGCTCACACTCGATATGAGCGTAGAGGAGGCATTTCCGAA
CTGTCCCAAGTACATTCAGCGTCGCCTTCTTGATCCTTCAACATCCGAAA
TGCCTCCAGTGCCACATGCTATACAATATGAGTCCGACACCAAACTCTCG
CCTGCAGATACGAGCTTAATTACGGCTGCCGATACCTTGTTCTTCGGAAC
GTACAATCCGTCAACTGGATTAGATGCAAATCACCGCGGTGGGAGACCTG
GGTTTATCCGCGTTACTTCGGACGATAGTTTGTACTGGCCAGATTATCGC
GGAAACGGCATGTTCCAATCATTTGGTAATTTGCAGCAGAATGATAAGGC
TGGCGTCACCATCTTCGATTTTGAAACAGGGCATTTATTACAATTGTCTG
GTTCTGCTCGGGTGCAGTGGGAAAAGAGCGCTTACCCAGATGTTGAAGCT
GCAGCTGAAAGAATTGTTACCTTTAAAGTCGATCATGTTCGTCGTAGCAT
TGGTCCAGTCACCAACTTCCGCTGGAATTTGTCGGACTATTCTCCGTACA
ACCCTATTATTCCAAAGCAAGACGCATCGACAGAGTTGGCAGACGACAAC
TCCATACATGTCTCTCTTGTCAAGATTGTTTCAGAAGCACCTAGCGTAAA
GACTTTCCGATTCCTTGCTCCGAAGTACATCCCGTTTCTGCCTGGACAGT
ACTGCACTTTTGAATTTGACCAACTCCCTGGTATCGATGAGAAGCTGTTA
CCTGTCGTCCGAACATGGACTTTATCTGAAGCTGCAAACTCCACGAAAGG
TGACTTGACTCTTGAGGTAAGCGTAAAACGCAAACCGGGTGGGTTAATGT
CAAATTGGCTGCATGACAACGCCAAGTTGGGCATGCGCGCCAAGCTGCTG
GGCATTGGAGGTGAAATGACCCCATTTCTCGACAATAACTTGCCGAAGAA
GTTGTTGTTCATCAGCGGTGGAATCGGAATGACACCTAACATGGCTATCT
TACGCGGTATTGGGGCTAGATCGAAAGGGAATGTCGGCTCGCAACCCGAC
ATTGTTTTCCTTCACCAAGAGAGAGAATACTCCGAGATACCATTCCAAAG
CGAACTGTTGAGGCGAGCCCGGTTGTCTAAAGGCCGTACAAGACTATTCT
TTGTGATTTCTGGCGAAAACCAAATTAGTTTGGCTGGCGAGCCTGAGGAC
GCAACCCTTGTGTCTGGAAGAATCGGAGCAGCTCTACTGCGAGAGCAAGT
TTTAGATCTTGCTGACCGCACCGTTTTTATGTGCGGTCCCATCGGCTTCA
TGGATAAGTTAAGAGCCACCCTATTAGATCTTGGCGCCTCACCGACACGG
ATAATTACAGAGCAGTTTACCTTTTAG
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protein sequence of Gchil2989.t1

>Gchil2989.t1 ID=Gchil2989.t1|Name=Gchil2989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=609bp
MTHFLQQPFHQGELLAQQLAGTQGVAAELGHGMSRSLPPTAVFNYMLQNL
NIIWLSTVTPCSNPLDASLWVSPVFGHAPDLAHASSTRLLQFHLQPLSDT
DVLRRNLSPLLTKNTALPAGVLIIDLDARRRYRTNGLLSLSSCPAESTEA
APHSLTLDMSVEEAFPNCPKYIQRRLLDPSTSEMPPVPHAIQYESDTKLS
PADTSLITAADTLFFGTYNPSTGLDANHRGGRPGFIRVTSDDSLYWPDYR
GNGMFQSFGNLQQNDKAGVTIFDFETGHLLQLSGSARVQWEKSAYPDVEA
AAERIVTFKVDHVRRSIGPVTNFRWNLSDYSPYNPIIPKQDASTELADDN
SIHVSLVKIVSEAPSVKTFRFLAPKYIPFLPGQYCTFEFDQLPGIDEKLL
PVVRTWTLSEAANSTKGDLTLEVSVKRKPGGLMSNWLHDNAKLGMRAKLL
GIGGEMTPFLDNNLPKKLLFISGGIGMTPNMAILRGIGARSKGNVGSQPD
IVFLHQEREYSEIPFQSELLRRARLSKGRTRLFFVISGENQISLAGEPED
ATLVSGRIGAALLREQVLDLADRTVFMCGPIGFMDKLRATLLDLGASPTR
IITEQFTF*
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mRNA from alignment at tig00000106_pilon:703713..705539-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2989.t1 ID=Gchil2989.t1|Name=Gchil2989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000106_pilon:703713..705539- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCATTTCCTTCAACAGCCGTTTCATCAAGGCGAGCTGCTTGCGCA
GCAATTGGCAGGCACTCAGGGCGTAGCCGCTGAACTCGGACATGGCATGT
CGCGTTCATTGCCTCCCACAGCTGTCTTCAATTATATGTTGCAGAATCTC
AACATCATCTGGCTTTCCACCGTCACCCCATGCTCGAACCCGCTTGATGC
GTCACTTTGGGTCTCTCCCGTATTTGGCCATGCTCCCGATCTCGCTCATG
CTTCTTCCACGCGCTTATTGCAATTTCATCTTCAACCTTTGTCTGATACC
GATGTTCTTCGACGAAATCTCTCCCCATTGCTCACCAAAAATACCGCTTT
ACCGGCTGGCGTTTTAATCATCGATCTGGACGCGAGACGTCGCTATCGCA
CCAACGGGCTTCTGTCGCTTTCGAGCTGTCCCGCTGAGTCAACAGAAGCT
GCGCCTCATTCGCTCACACTCGATATGAGCGTAGAGGAGGCATTTCCGAA
CTGTCCCAAGTACATTCAGCGTCGCCTTCTTGATCCTTCAACATCCGAAA
TGCCTCCAGTGCCACATGCTATACAATATGAGTCCGACACCAAACTCTCG
CCTGCAGATACGAGCTTAATTACGGCTGCCGATACCTTGTTCTTCGGAAC
GTACAATCCGTCAACTGGATTAGATGCAAATCACCGCGGTGGGAGACCTG
GGTTTATCCGCGTTACTTCGGACGATAGTTTGTACTGGCCAGATTATCGC
GGAAACGGCATGTTCCAATCATTTGGTAATTTGCAGCAGAATGATAAGGC
TGGCGTCACCATCTTCGATTTTGAAACAGGGCATTTATTACAATTGTCTG
GTTCTGCTCGGGTGCAGTGGGAAAAGAGCGCTTACCCAGATGTTGAAGCT
GCAGCTGAAAGAATTGTTACCTTTAAAGTCGATCATGTTCGTCGTAGCAT
TGGTCCAGTCACCAACTTCCGCTGGAATTTGTCGGACTATTCTCCGTACA
ACCCTATTATTCCAAAGCAAGACGCATCGACAGAGTTGGCAGACGACAAC
TCCATACATGTCTCTCTTGTCAAGATTGTTTCAGAAGCACCTAGCGTAAA
GACTTTCCGATTCCTTGCTCCGAAGTACATCCCGTTTCTGCCTGGACAGT
ACTGCACTTTTGAATTTGACCAACTCCCTGGTATCGATGAGAAGCTGTTA
CCTGTCGTCCGAACATGGACTTTATCTGAAGCTGCAAACTCCACGAAAGG
TGACTTGACTCTTGAGGTAAGCGTAAAACGCAAACCGGGTGGGTTAATGT
CAAATTGGCTGCATGACAACGCCAAGTTGGGCATGCGCGCCAAGCTGCTG
GGCATTGGAGGTGAAATGACCCCATTTCTCGACAATAACTTGCCGAAGAA
GTTGTTGTTCATCAGCGGTGGAATCGGAATGACACCTAACATGGCTATCT
TACGCGGTATTGGGGCTAGATCGAAAGGGAATGTCGGCTCGCAACCCGAC
ATTGTTTTCCTTCACCAAGAGAGAGAATACTCCGAGATACCATTCCAAAG
CGAACTGTTGAGGCGAGCCCGGTTGTCTAAAGGCCGTACAAGACTATTCT
TTGTGATTTCTGGCGAAAACCAAATTAGTTTGGCTGGCGAGCCTGAGGAC
GCAACCCTTGTGTCTGGAAGAATCGGAGCAGCTCTACTGCGAGAGCAAGT
TTTAGATCTTGCTGACCGCACCGTTTTTATGTGCGGTCCCATCGGCTTCA
TGGATAAGTTAAGAGCCACCCTATTAGATCTTGGCGCCTCACCGACACGG
ATAATTACAGAGCAGTTTACCTTTTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:703713..705539-

>Gchil2989.t1 ID=Gchil2989.t1|Name=Gchil2989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1827bp|location=Sequence derived from alignment at tig00000106_pilon:703713..705539- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCATTTCCTTCAACAGCCGTTTCATCAAGGCGAGCTGCTTGCGCA
GCAATTGGCAGGCACTCAGGGCGTAGCCGCTGAACTCGGACATGGCATGT
CGCGTTCATTGCCTCCCACAGCTGTCTTCAATTATATGTTGCAGAATCTC
AACATCATCTGGCTTTCCACCGTCACCCCATGCTCGAACCCGCTTGATGC
GTCACTTTGGGTCTCTCCCGTATTTGGCCATGCTCCCGATCTCGCTCATG
CTTCTTCCACGCGCTTATTGCAATTTCATCTTCAACCTTTGTCTGATACC
GATGTTCTTCGACGAAATCTCTCCCCATTGCTCACCAAAAATACCGCTTT
ACCGGCTGGCGTTTTAATCATCGATCTGGACGCGAGACGTCGCTATCGCA
CCAACGGGCTTCTGTCGCTTTCGAGCTGTCCCGCTGAGTCAACAGAAGCT
GCGCCTCATTCGCTCACACTCGATATGAGCGTAGAGGAGGCATTTCCGAA
CTGTCCCAAGTACATTCAGCGTCGCCTTCTTGATCCTTCAACATCCGAAA
TGCCTCCAGTGCCACATGCTATACAATATGAGTCCGACACCAAACTCTCG
CCTGCAGATACGAGCTTAATTACGGCTGCCGATACCTTGTTCTTCGGAAC
GTACAATCCGTCAACTGGATTAGATGCAAATCACCGCGGTGGGAGACCTG
GGTTTATCCGCGTTACTTCGGACGATAGTTTGTACTGGCCAGATTATCGC
GGAAACGGCATGTTCCAATCATTTGGTAATTTGCAGCAGAATGATAAGGC
TGGCGTCACCATCTTCGATTTTGAAACAGGGCATTTATTACAATTGTCTG
GTTCTGCTCGGGTGCAGTGGGAAAAGAGCGCTTACCCAGATGTTGAAGCT
GCAGCTGAAAGAATTGTTACCTTTAAAGTCGATCATGTTCGTCGTAGCAT
TGGTCCAGTCACCAACTTCCGCTGGAATTTGTCGGACTATTCTCCGTACA
ACCCTATTATTCCAAAGCAAGACGCATCGACAGAGTTGGCAGACGACAAC
TCCATACATGTCTCTCTTGTCAAGATTGTTTCAGAAGCACCTAGCGTAAA
GACTTTCCGATTCCTTGCTCCGAAGTACATCCCGTTTCTGCCTGGACAGT
ACTGCACTTTTGAATTTGACCAACTCCCTGGTATCGATGAGAAGCTGTTA
CCTGTCGTCCGAACATGGACTTTATCTGAAGCTGCAAACTCCACGAAAGG
TGACTTGACTCTTGAGGTAAGCGTAAAACGCAAACCGGGTGGGTTAATGT
CAAATTGGCTGCATGACAACGCCAAGTTGGGCATGCGCGCCAAGCTGCTG
GGCATTGGAGGTGAAATGACCCCATTTCTCGACAATAACTTGCCGAAGAA
GTTGTTGTTCATCAGCGGTGGAATCGGAATGACACCTAACATGGCTATCT
TACGCGGTATTGGGGCTAGATCGAAAGGGAATGTCGGCTCGCAACCCGAC
ATTGTTTTCCTTCACCAAGAGAGAGAATACTCCGAGATACCATTCCAAAG
CGAACTGTTGAGGCGAGCCCGGTTGTCTAAAGGCCGTACAAGACTATTCT
TTGTGATTTCTGGCGAAAACCAAATTAGTTTGGCTGGCGAGCCTGAGGAC
GCAACCCTTGTGTCTGGAAGAATCGGAGCAGCTCTACTGCGAGAGCAAGT
TTTAGATCTTGCTGACCGCACCGTTTTTATGTGCGGTCCCATCGGCTTCA
TGGATAAGTTAAGAGCCACCCTATTAGATCTTGGCGCCTCACCGACACGG
ATAATTACAGAGCAGTTTACCTTTTAG
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