Gchil2987.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2987.t1
Unique NameGchil2987.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:697854..698849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S149_20V6.1
Max annot lvl33090|Viridiplantae
Evalue7.99e-83
EggNOG OGs2ANNQ@1|root,2RZET@2759|Eukaryota,37UVI@33090|Viridiplantae
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2987Gchil2987Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 697854..698849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2987.t1Gchil2987.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 697854..698849 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2987.t1.stop1Gchil2987.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 697854..697856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2987.t1.CDS1Gchil2987.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 697854..698041 -
Gchil2987.t1.CDS2Gchil2987.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 698126..698849 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2987.t1.exon1Gchil2987.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 697854..698041 -
Gchil2987.t1.exon2Gchil2987.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 698126..698849 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2987.t1.intron1Gchil2987.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000106_pilon 698042..698125 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2987.t1.start1Gchil2987.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 698847..698849 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2987.t1 ID=Gchil2987.t1|Name=Gchil2987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MTAELNKLANDPNFVIQIALGDPAPVLKPQPRDSGLRFCGIYFDSPKRYI
LKKAHMSRDDNRIFDADSGQLVYVSHHPGKNPYGMFDPLGTTNQDMRYSV
AGGEWDSVCDVSGRGLFRTFKIRPKSLSRHGRQYIKQGNETLFNVGKMGK
LKTMSVRDHFMVADKDGSDLVYKCVADLMGRSIQIFNADEELVAQMAKTK
KALLQTVALGSGSESTIDIAPGVDCSVILAIVFGMGQVGAHFMGDVFDNF
VKDPLTDAAMDSAVDAVGMGEAVDGYNQLSNEAFHQIGSITRVGRFIHQN
FFN*
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spliced messenger RNA

>Gchil2987.t1 ID=Gchil2987.t1|Name=Gchil2987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000106_pilon:697854..698849- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCTGAACTTAACAAGCTGGCCAATGACCCGAACTTTGTCATCCA
AATTGCTCTTGGCGACCCCGCTCCCGTGCTAAAGCCTCAACCTCGTGATT
CCGGCCTGAGGTTCTGCGGAATCTACTTCGACTCCCCAAAGCGTTACATC
CTGAAGAAGGCTCATATGTCACGTGATGACAACCGCATCTTTGACGCAGA
CTCAGGTCAACTGGTATATGTGAGTCATCATCCTGGAAAGAATCCGTATG
GAATGTTCGACCCCCTTGGCACTACAAACCAAGATATGAGGTACAGTGTG
GCTGGCGGTGAATGGGACTCAGTTTGCGATGTTTCTGGGCGGGGACTTTT
CCGAACCTTTAAAATCAGACCAAAGTCCCTTTCCCGCCATGGACGCCAGT
ACATTAAGCAAGGCAACGAAACCTTGTTCAACGTCGGAAAGATGGGAAAA
CTCAAGACTATGTCCGTCAGGGACCACTTCATGGTGGCAGACAAAGATGG
CTCTGACTTAGTGTATAAGTGCGTAGCCGATCTCATGGGTCGCTCGATTC
AAATCTTTAATGCCGATGAAGAGCTCGTTGCGCAGATGGCGAAGACAAAA
AAAGCTTTGCTACAGACGGTCGCCCTTGGAAGTGGTTCTGAAAGTACAAT
TGATATCGCCCCTGGCGTCGATTGCAGTGTTATCCTAGCGATTGTTTTCG
GAATGGGGCAAGTTGGAGCTCATTTCATGGGTGATGTATTTGATAATTTC
GTGAAGGATCCCTTGACTGATGCAGCAATGGACAGTGCAGTTGACGCTGT
TGGTATGGGTGAAGCCGTAGATGGCTACAACCAACTGTCTAACGAAGCAT
TTCACCAGATTGGCTCTATCACACGGGTTGGGCGTTTCATTCACCAGAAC
TTCTTCAATTAA
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protein sequence of Gchil2987.t1

>Gchil2987.t1 ID=Gchil2987.t1|Name=Gchil2987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MTAELNKLANDPNFVIQIALGDPAPVLKPQPRDSGLRFCGIYFDSPKRYI
LKKAHMSRDDNRIFDADSGQLVYVSHHPGKNPYGMFDPLGTTNQDMRYSV
AGGEWDSVCDVSGRGLFRTFKIRPKSLSRHGRQYIKQGNETLFNVGKMGK
LKTMSVRDHFMVADKDGSDLVYKCVADLMGRSIQIFNADEELVAQMAKTK
KALLQTVALGSGSESTIDIAPGVDCSVILAIVFGMGQVGAHFMGDVFDNF
VKDPLTDAAMDSAVDAVGMGEAVDGYNQLSNEAFHQIGSITRVGRFIHQN
FFN*
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mRNA from alignment at tig00000106_pilon:697854..698849-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2987.t1 ID=Gchil2987.t1|Name=Gchil2987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000106_pilon:697854..698849- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCTGAACTTAACAAGCTGGCCAATGACCCGAACTTTGTCATCCA
AATTGCTCTTGGCGACCCCGCTCCCGTGCTAAAGCCTCAACCTCGTGATT
CCGGCCTGAGGTTCTGCGGAATCTACTTCGACTCCCCAAAGCGTTACATC
CTGAAGAAGGCTCATATGTCACGTGATGACAACCGCATCTTTGACGCAGA
CTCAGGTCAACTGGTATATGTGAGTCATCATCCTGGAAAGAATCCGTATG
GAATGTTCGACCCCCTTGGCACTACAAACCAAGATATGAGGTACAGTGTG
GCTGGCGGTGAATGGGACTCAGTTTGCGATGTTTCTGGGCGGGGACTTTT
CCGAACCTTTAAAATCAGACCAAAGTCCCTTTCCCGCCATGGACGCCAGT
ACATTAAGCAAGGCAACGAAACCTTGTTCAACGTCGGAAAGATGGGAAAA
CTCAAGACTATGTCCGTCAGGGACCACTTCATGGTGGCAGACAAAGATGG
CTCTGACTTAGTGTATAAGTGCGTAGCCGATCTCATGGGTCGCTCGATTC
AAATCTTTAATGCCGATGAAGAGCTCGTTGCGCAGATGGCGAAGACAAAA
AAAGCTTTGCTACAGACGGTCGCCCTTGGAAGTGGTTCTGAAAGTACAAT
TGATATCGCCCCTGGCGTCGATTGCAGTGTTATCCTAGCGATTGTTTTCG
GAATGGGGCAAGTTGGAGCTCATTGTAAGTTTCGCTTTCAAGTGATCGGA
AATCATTTTGATGAAGATTTATACTAACTATTTGAGTTCTATTTCTTTCT
CATCACAGTCATGGGTGATGTATTTGATAATTTCGTGAAGGATCCCTTGA
CTGATGCAGCAATGGACAGTGCAGTTGACGCTGTTGGTATGGGTGAAGCC
GTAGATGGCTACAACCAACTGTCTAACGAAGCATTTCACCAGATTGGCTC
TATCACACGGGTTGGGCGTTTCATTCACCAGAACTTCTTCAATTAA
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Coding sequence (CDS) from alignment at tig00000106_pilon:697854..698849-

>Gchil2987.t1 ID=Gchil2987.t1|Name=Gchil2987.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000106_pilon:697854..698849- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCTGAACTTAACAAGCTGGCCAATGACCCGAACTTTGTCATCCA
AATTGCTCTTGGCGACCCCGCTCCCGTGCTAAAGCCTCAACCTCGTGATT
CCGGCCTGAGGTTCTGCGGAATCTACTTCGACTCCCCAAAGCGTTACATC
CTGAAGAAGGCTCATATGTCACGTGATGACAACCGCATCTTTGACGCAGA
CTCAGGTCAACTGGTATATGTGAGTCATCATCCTGGAAAGAATCCGTATG
GAATGTTCGACCCCCTTGGCACTACAAACCAAGATATGAGGTACAGTGTG
GCTGGCGGTGAATGGGACTCAGTTTGCGATGTTTCTGGGCGGGGACTTTT
CCGAACCTTTAAAATCAGACCAAAGTCCCTTTCCCGCCATGGACGCCAGT
ACATTAAGCAAGGCAACGAAACCTTGTTCAACGTCGGAAAGATGGGAAAA
CTCAAGACTATGTCCGTCAGGGACCACTTCATGGTGGCAGACAAAGATGG
CTCTGACTTAGTGTATAAGTGCGTAGCCGATCTCATGGGTCGCTCGATTC
AAATCTTTAATGCCGATGAAGAGCTCGTTGCGCAGATGGCGAAGACAAAA
AAAGCTTTGCTACAGACGGTCGCCCTTGGAAGTGGTTCTGAAAGTACAAT
TGATATCGCCCCTGGCGTCGATTGCAGTGTTATCCTAGCGATTGTTTTCG
GAATGGGGCAAGTTGGAGCTCATTTCATGGGTGATGTATTTGATAATTTC
GTGAAGGATCCCTTGACTGATGCAGCAATGGACAGTGCAGTTGACGCTGT
TGGTATGGGTGAAGCCGTAGATGGCTACAACCAACTGTCTAACGAAGCAT
TTCACCAGATTGGCTCTATCACACGGGTTGGGCGTTTCATTCACCAGAAC
TTCTTCAATTAA
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