Gchil2982.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2982.t1
Unique Name	Gchil2982.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	271

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:677005..677817 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN023CT
PFAMs	Sod_Fe_C,Sod_Fe_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04564
KEGG Pathway	ko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Evalue	1.6e-97
EggNOG OGs	COG0605@1\|root,KOG0876@2759\|Eukaryota
EC	1.15.1.1
Description	oxidoreductase activity, acting on superoxide radicals as acceptor
COG category	P
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2982	Gchil2982	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 677005..677817 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2982.t1.start1	Gchil2982.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 677005..677007 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2982.t1.CDS1	Gchil2982.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 677005..677817 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2982.t1.exon1	Gchil2982.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 677005..677817 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2982.t1.stop1	Gchil2982.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 677815..677817 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2982.t1	Gchil2982.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 677005..677817 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:677005..677817+
coding sequence from alignment at tig00000106_pilon:677005..677817+

mRNA sequence

>Gchil2982.t1 ID=Gchil2982.t1|Name=Gchil2982.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=271bp
MISSIAAAATVSTRSVFSHGAASALRRLSDPRVACRFAAVVPARSAMNFS
LPPLAYAYDALEPYVDATTMSIHHTKHHQTYVSNLNKVLDGPNGDALKGL
SLAAIQSNIPSLPDAIRTPVINSGGGHYNHAMFWTTMAKPGSCNVTPVGS
LKTKIDQSFGSFDDMKSKFNAAAAARFGSGWAWLSLAPDGKLFISSTANQ
ENPLMKGVVAEPGTPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDQV
AVNYDSACAGNTAVFDTPVA*

spliced messenger RNA

>Gchil2982.t1 ID=Gchil2982.t1|Name=Gchil2982.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000106_pilon:677005..677817+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCTTCTATCGCTGCCGCCGCTACCGTCTCTACGCGCTCCGTCTT
CTCCCACGGCGCCGCCTCCGCCCTCCGTCGTCTGTCCGATCCTCGTGTCG
CGTGTCGCTTCGCTGCCGTCGTGCCCGCCCGATCCGCTATGAATTTCTCG
CTGCCGCCGCTGGCCTACGCTTATGACGCGCTTGAGCCTTATGTCGATGC
CACTACCATGAGCATTCATCATACCAAGCATCATCAGACCTATGTCAGTA
ACCTCAACAAGGTGCTTGATGGTCCCAACGGCGATGCGCTAAAGGGGCTG
TCCTTGGCCGCCATTCAGTCGAACATCCCCTCGCTGCCTGATGCAATCCG
CACCCCCGTCATCAACTCGGGCGGCGGCCATTACAACCACGCCATGTTCT
GGACCACCATGGCCAAGCCCGGCTCCTGCAACGTCACCCCCGTTGGCTCC
CTCAAGACGAAGATCGACCAATCCTTTGGCAGTTTCGACGACATGAAGTC
CAAGTTCAACGCTGCCGCCGCCGCACGCTTCGGATCGGGATGGGCCTGGC
TCAGCCTCGCCCCCGACGGTAAGCTCTTCATCTCCTCCACCGCAAACCAG
GAAAACCCCCTCATGAAGGGCGTTGTTGCCGAGCCCGGCACCCCCATCCT
GGGCCTGGACGTGTGGGAGCACGCCTACTACCTCAAGTACCAAAACCGCC
GCCCCGAGTACATTGCCGCCTTTTGGAATGTCGTAAACTGGGATCAGGTT
GCCGTCAACTACGACAGTGCCTGTGCCGGCAACACCGCCGTCTTTGACAC
CCCTGTCGCCTAA

protein sequence of Gchil2982.t1

>Gchil2982.t1 ID=Gchil2982.t1|Name=Gchil2982.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MISSIAAAATVSTRSVFSHGAASALRRLSDPRVACRFAAVVPARSAMNFS
LPPLAYAYDALEPYVDATTMSIHHTKHHQTYVSNLNKVLDGPNGDALKGL
SLAAIQSNIPSLPDAIRTPVINSGGGHYNHAMFWTTMAKPGSCNVTPVGS
LKTKIDQSFGSFDDMKSKFNAAAAARFGSGWAWLSLAPDGKLFISSTANQ
ENPLMKGVVAEPGTPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDQV
AVNYDSACAGNTAVFDTPVA*

mRNA from alignment at tig00000106_pilon:677005..677817+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2982.t1 ID=Gchil2982.t1|Name=Gchil2982.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000106_pilon:677005..677817+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTTCTTCTATCGCTGCCGCCGCTACCGTCTCTACGCGCTCCGTCTT
CTCCCACGGCGCCGCCTCCGCCCTCCGTCGTCTGTCCGATCCTCGTGTCG
CGTGTCGCTTCGCTGCCGTCGTGCCCGCCCGATCCGCTATGAATTTCTCG
CTGCCGCCGCTGGCCTACGCTTATGACGCGCTTGAGCCTTATGTCGATGC
CACTACCATGAGCATTCATCATACCAAGCATCATCAGACCTATGTCAGTA
ACCTCAACAAGGTGCTTGATGGTCCCAACGGCGATGCGCTAAAGGGGCTG
TCCTTGGCCGCCATTCAGTCGAACATCCCCTCGCTGCCTGATGCAATCCG
CACCCCCGTCATCAACTCGGGCGGCGGCCATTACAACCACGCCATGTTCT
GGACCACCATGGCCAAGCCCGGCTCCTGCAACGTCACCCCCGTTGGCTCC
CTCAAGACGAAGATCGACCAATCCTTTGGCAGTTTCGACGACATGAAGTC
CAAGTTCAACGCTGCCGCCGCCGCACGCTTCGGATCGGGATGGGCCTGGC
TCAGCCTCGCCCCCGACGGTAAGCTCTTCATCTCCTCCACCGCAAACCAG
GAAAACCCCCTCATGAAGGGCGTTGTTGCCGAGCCCGGCACCCCCATCCT
GGGCCTGGACGTGTGGGAGCACGCCTACTACCTCAAGTACCAAAACCGCC
GCCCCGAGTACATTGCCGCCTTTTGGAATGTCGTAAACTGGGATCAGGTT
GCCGTCAACTACGACAGTGCCTGTGCCGGCAACACCGCCGTCTTTGACAC
CCCTGTCGCCTAA

Coding sequence (CDS) from alignment at tig00000106_pilon:677005..677817+

>Gchil2982.t1 ID=Gchil2982.t1|Name=Gchil2982.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000106_pilon:677005..677817+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTTCTTCTATCGCTGCCGCCGCTACCGTCTCTACGCGCTCCGTCTT
CTCCCACGGCGCCGCCTCCGCCCTCCGTCGTCTGTCCGATCCTCGTGTCG
CGTGTCGCTTCGCTGCCGTCGTGCCCGCCCGATCCGCTATGAATTTCTCG
CTGCCGCCGCTGGCCTACGCTTATGACGCGCTTGAGCCTTATGTCGATGC
CACTACCATGAGCATTCATCATACCAAGCATCATCAGACCTATGTCAGTA
ACCTCAACAAGGTGCTTGATGGTCCCAACGGCGATGCGCTAAAGGGGCTG
TCCTTGGCCGCCATTCAGTCGAACATCCCCTCGCTGCCTGATGCAATCCG
CACCCCCGTCATCAACTCGGGCGGCGGCCATTACAACCACGCCATGTTCT
GGACCACCATGGCCAAGCCCGGCTCCTGCAACGTCACCCCCGTTGGCTCC
CTCAAGACGAAGATCGACCAATCCTTTGGCAGTTTCGACGACATGAAGTC
CAAGTTCAACGCTGCCGCCGCCGCACGCTTCGGATCGGGATGGGCCTGGC
TCAGCCTCGCCCCCGACGGTAAGCTCTTCATCTCCTCCACCGCAAACCAG
GAAAACCCCCTCATGAAGGGCGTTGTTGCCGAGCCCGGCACCCCCATCCT
GGGCCTGGACGTGTGGGAGCACGCCTACTACCTCAAGTACCAAAACCGCC
GCCCCGAGTACATTGCCGCCTTTTGGAATGTCGTAAACTGGGATCAGGTT
GCCGTCAACTACGACAGTGCCTGTGCCGGCAACACCGCCGTCTTTGACAC
CCCTGTCGCCTAA